RNA–Protein interactions for RNA: ENST00000253048.9

ZC3H4-201, Transcript of zinc finger CCCH-type containing 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene ZC3H4, Length 6,119 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4-201ENST00000253048 DCAF8L2P0C7V8 631 aa25.7■■□□□ 1.71
ZC3H4-201ENST00000253048 FAM9AQ8IZU1 332 aaPredicted RBP23.4■■□□□ 1.34
ZC3H4-201ENST00000253048 SUPT5HO00267 1087 aaKnown RBP23.36■■□□□ 1.33
ZC3H4-201ENST00000253048 EHMT2Q96KQ7 1210 aa23.04■■□□□ 1.28
ZC3H4-201ENST00000253048 SHROOM4Q9ULL8 1493 aa22.97■■□□□ 1.27
ZC3H4-201ENST00000253048 APLP2Q06481 763 aa22.92■■□□□ 1.26
ZC3H4-201ENST00000253048 NISCHQ9Y2I1 1504 aa22.91■■□□□ 1.26
ZC3H4-201ENST00000253048 PELP1Q8IZL8 1130 aaKnown RBP22.48■■□□□ 1.19
ZC3H4-201ENST00000253048 ATP1B4Q9UN42 357 aaPredicted RBP22.4■■□□□ 1.18
ZC3H4-201ENST00000253048 RANGAP1P46060 587 aaPredicted RBP22.32■■□□□ 1.16
ZC3H4-201ENST00000253048 TTBK1Q5TCY1 1321 aaPredicted RBP22.14■■□□□ 1.13
ZC3H4-201ENST00000253048 MYT1LQ9UL68 1186 aa22.11■■□□□ 1.13
ZC3H4-201ENST00000253048 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.78■■□□□ 1.08
ZC3H4-201ENST00000253048 HNRNPUL2Q1KMD3 747 aaKnown RBP21.78■■□□□ 1.08
ZC3H4-201ENST00000253048 UBTFP17480 764 aaKnown RBP21.75■■□□□ 1.07
ZC3H4-201ENST00000253048 TRIM41Q8WV44 630 aa21.69■■□□□ 1.06
ZC3H4-201ENST00000253048 ERICH6Q7L0X2 663 aa21.66■■□□□ 1.06
ZC3H4-201ENST00000253048 CHIC1Q5VXU3 224 aa21.59■■□□□ 1.05
ZC3H4-201ENST00000253048 CCER1Q8TC90 406 aaPredicted RBP21.5■■□□□ 1.03
ZC3H4-201ENST00000253048 PCGF6Q9BYE7 350 aa21.46■■□□□ 1.03
ZC3H4-201ENST00000253048 SLC4A1APQ9BWU0 796 aaKnown RBP21.23■□□□□ 0.99
ZC3H4-201ENST00000253048 POLR3GLQ9BT43 218 aa21.19■□□□□ 0.98
ZC3H4-201ENST00000253048 ITGAEP38570 1179 aa21.08■□□□□ 0.96
ZC3H4-201ENST00000253048 FBLN2P98095 1184 aa21.03■□□□□ 0.96
ZC3H4-201ENST00000253048 NEFLP07196 543 aa21.02■□□□□ 0.95
ZC3H4-201ENST00000253048 PABPN1Q86U42 306 aaKnown RBP eCLIP21■□□□□ 0.95
ZC3H4-201ENST00000253048 ABCC9O60706 1549 aa20.93■□□□□ 0.94
ZC3H4-201ENST00000253048 CENPBP07199 599 aaPredicted RBP20.91■□□□□ 0.94
ZC3H4-201ENST00000253048 ZEB1P37275 1124 aaPredicted RBP20.91■□□□□ 0.94
ZC3H4-201ENST00000253048 BCANQ96GW7 911 aa20.89■□□□□ 0.93
ZC3H4-201ENST00000253048 PPARGC1BQ86YN6 1023 aaKnown RBP20.83■□□□□ 0.92
ZC3H4-201ENST00000253048 CNGB1Q14028 1251 aaPredicted RBP20.81■□□□□ 0.92
ZC3H4-201ENST00000253048 ESF1Q9H501 851 aaKnown RBP20.74■□□□□ 0.91
ZC3H4-201ENST00000253048 DAXXQ9UER7 740 aaPredicted RBP20.7■□□□□ 0.9
ZC3H4-201ENST00000253048 MYT1Q01538 1121 aa20.67■□□□□ 0.9
ZC3H4-201ENST00000253048 PLPPR3Q6T4P5 718 aa20.65■□□□□ 0.9
ZC3H4-201ENST00000253048 YTHDC1Q96MU7 727 aaKnown RBP20.64■□□□□ 0.89
ZC3H4-201ENST00000253048 SLC24A1O60721 1099 aa20.63■□□□□ 0.89
ZC3H4-201ENST00000253048 TRIM52Q96A61 297 aa20.62■□□□□ 0.89
ZC3H4-201ENST00000253048 FAM50AQ14320 339 aaKnown RBP20.58■□□□□ 0.88
ZC3H4-201ENST00000253048 NPM1P06748 294 aaKnown RBP eCLIP20.55■□□□□ 0.88
ZC3H4-201ENST00000253048 STAG3Q9UJ98 1225 aa20.41■□□□□ 0.86
ZC3H4-201ENST00000253048 CLSPNQ9HAW4 1339 aa20.38■□□□□ 0.85
ZC3H4-201ENST00000253048 ZNF326Q5BKZ1 582 aaKnown RBP20.36■□□□□ 0.85
ZC3H4-201ENST00000253048 ZBTB47Q9UFB7 747 aaPredicted RBP20.36■□□□□ 0.85
ZC3H4-201ENST00000253048 ARID3CA6NKF2 412 aa20.35■□□□□ 0.85
ZC3H4-201ENST00000253048 NEFMP07197 916 aa20.35■□□□□ 0.85
ZC3H4-201ENST00000253048 ZNF777Q9ULD5 760 aaPredicted RBP20.26■□□□□ 0.83
ZC3H4-201ENST00000253048 CDK11AQ9UQ88 783 aaPredicted RBP20.18■□□□□ 0.82
ZC3H4-201ENST00000253048 CHGAP10645 457 aaKnown RBP20.18■□□□□ 0.82
ZC3H4-201ENST00000253048 TRIM26Q12899 539 aaPredicted RBP20.16■□□□□ 0.82
ZC3H4-201ENST00000253048 NEUROD1Q13562 356 aa20.15■□□□□ 0.82
ZC3H4-201ENST00000253048 SCAF1Q9H7N4 1312 aaKnown RBP20.15■□□□□ 0.82
ZC3H4-201ENST00000253048 P3H3Q8IVL6 736 aa20.14■□□□□ 0.81
ZC3H4-201ENST00000253048 ZNF316A6NFI3 1004 aaPredicted RBP20.13■□□□□ 0.81
ZC3H4-201ENST00000253048 BCL11AQ9H165 835 aa20.1■□□□□ 0.81
ZC3H4-201ENST00000253048 A0A0G2JS52 829 aa20.06■□□□□ 0.8
ZC3H4-201ENST00000253048 CANXP27824 592 aaKnown RBP20.04■□□□□ 0.8
ZC3H4-201ENST00000253048 HRCP23327 699 aa20.03■□□□□ 0.8
ZC3H4-201ENST00000253048 LOC105371045A0A1W2PR82 267 aa20.03■□□□□ 0.8
ZC3H4-201ENST00000253048 C14orf37Q86TY3 774 aa19.91■□□□□ 0.78
ZC3H4-201ENST00000253048 CHMP7Q8WUX9 453 aaPredicted RBP19.9■□□□□ 0.78
ZC3H4-201ENST00000253048 ARID4BQ4LE39 1312 aaPredicted RBP19.89■□□□□ 0.78
ZC3H4-201ENST00000253048 HAP1P54257 671 aaPredicted RBP19.85■□□□□ 0.77
ZC3H4-201ENST00000253048 RTL5Q5HYW3 569 aaPredicted RBP19.85■□□□□ 0.77
ZC3H4-201ENST00000253048 NPM2Q86SE8 214 aaKnown RBP19.83■□□□□ 0.77
ZC3H4-201ENST00000253048 TRHP20396 242 aaPredicted RBP19.83■□□□□ 0.77
ZC3H4-201ENST00000253048 ZBTB7CA1YPR0 619 aa19.81■□□□□ 0.76
ZC3H4-201ENST00000253048 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.79■□□□□ 0.761e-7■■■□□ 16.3
ZC3H4-201ENST00000253048 PLEKHG5O94827 1062 aa19.78■□□□□ 0.76
ZC3H4-201ENST00000253048 PPP1R15AO75807 674 aaPredicted RBP19.77■□□□□ 0.76
ZC3H4-201ENST00000253048 ANP32CO43423 234 aa19.74■□□□□ 0.75
ZC3H4-201ENST00000253048 SCRIBQ14160 1630 aa19.69■□□□□ 0.74
ZC3H4-201ENST00000253048 KCNH8Q96L42 1107 aa19.64■□□□□ 0.73
ZC3H4-201ENST00000253048 TSPY4P0CV99 314 aa19.62■□□□□ 0.73
ZC3H4-201ENST00000253048 TSPY10P0CW01 314 aa19.62■□□□□ 0.73
ZC3H4-201ENST00000253048 ERCC6Q03468 1493 aa19.59■□□□□ 0.73
ZC3H4-201ENST00000253048 SENP3Q9H4L4 574 aaPredicted RBP19.59■□□□□ 0.73
ZC3H4-201ENST00000253048 CSRNP3Q8WYN3 585 aa19.56■□□□□ 0.72
ZC3H4-201ENST00000253048 ARXQ96QS3 562 aa19.46■□□□□ 0.71
ZC3H4-201ENST00000253048 NPHP1O15259 732 aa19.45■□□□□ 0.7
ZC3H4-201ENST00000253048 CHIC2Q9UKJ5 165 aa19.45■□□□□ 0.7
ZC3H4-201ENST00000253048 LMOD2Q6P5Q4 547 aa19.42■□□□□ 0.7
ZC3H4-201ENST00000253048 DIEXFQ68CQ4 756 aaKnown RBP19.42■□□□□ 0.7
ZC3H4-201ENST00000253048 PLEKHD1A6NEE1 506 aa19.4■□□□□ 0.7
ZC3H4-201ENST00000253048 TONSLQ96HA7 1378 aa19.36■□□□□ 0.69
ZC3H4-201ENST00000253048 KDM2AQ9Y2K7 1162 aa19.36■□□□□ 0.69
ZC3H4-201ENST00000253048 AEBP2Q6ZN18 517 aaPredicted RBP19.33■□□□□ 0.68
ZC3H4-201ENST00000253048 CDK11BP21127 795 aaKnown RBP19.31■□□□□ 0.68
ZC3H4-201ENST00000253048 HSP90AA1P07900 732 aaKnown RBP19.31■□□□□ 0.68
ZC3H4-201ENST00000253048 MTUS2Q5JR59 1369 aa19.3■□□□□ 0.68
ZC3H4-201ENST00000253048 WDR43Q15061 677 aaKnown RBP eCLIP19.29■□□□□ 0.68
ZC3H4-201ENST00000253048 RB1CC1Q8TDY2 1594 aa19.28■□□□□ 0.68
ZC3H4-201ENST00000253048 TMC1Q8TDI8 760 aa19.24■□□□□ 0.67
ZC3H4-201ENST00000253048 MLECQ14165 292 aa19.24■□□□□ 0.67
ZC3H4-201ENST00000253048 MYH16Q9H6N6 1097 aa19.22■□□□□ 0.67
ZC3H4-201ENST00000253048 UPF2Q9HAU5 1272 aaKnown RBP19.18■□□□□ 0.66
ZC3H4-201ENST00000253048 HDGFP51858 240 aaKnown RBP19.17■□□□□ 0.66
ZC3H4-201ENST00000253048 SALL2Q9Y467 1007 aaPredicted RBP19.16■□□□□ 0.66
ZC3H4-201ENST00000253048 POGKQ9P215 609 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms