RNA–Protein interactions for RNA: ENST00000234256.3

SLC1A4-201, Transcript of solute carrier family 1 member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SLC1A4, Length 4,561 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC1A4-201ENST00000234256 DCAF8L2P0C7V8 631 aa30.07■■■□□ 2.4
SLC1A4-201ENST00000234256 NISCHQ9Y2I1 1504 aa29.72■■■□□ 2.35
SLC1A4-201ENST00000234256 SUPT5HO00267 1087 aaKnown RBP29.05■■■□□ 2.24
SLC1A4-201ENST00000234256 SHROOM4Q9ULL8 1493 aa28.64■■■□□ 2.18
SLC1A4-201ENST00000234256 EHMT2Q96KQ7 1210 aa28.06■■■□□ 2.08
SLC1A4-201ENST00000234256 FAM9AQ8IZU1 332 aaPredicted RBP27.38■■□□□ 1.97
SLC1A4-201ENST00000234256 PCGF6Q9BYE7 350 aa27.34■■□□□ 1.97
SLC1A4-201ENST00000234256 TTBK1Q5TCY1 1321 aaPredicted RBP27.08■■□□□ 1.93
SLC1A4-201ENST00000234256 APLP2Q06481 763 aa26.73■■□□□ 1.87
SLC1A4-201ENST00000234256 TRIM41Q8WV44 630 aa26.69■■□□□ 1.86
SLC1A4-201ENST00000234256 RANGAP1P46060 587 aaPredicted RBP26.61■■□□□ 1.85
SLC1A4-201ENST00000234256 PPARGC1BQ86YN6 1023 aaKnown RBP26.41■■□□□ 1.82
SLC1A4-201ENST00000234256 CCER1Q8TC90 406 aaPredicted RBP26.4■■□□□ 1.82
SLC1A4-201ENST00000234256 LOC105371045A0A1W2PR82 267 aa26.24■■□□□ 1.79
SLC1A4-201ENST00000234256 UBTFP17480 764 aaKnown RBP26.23■■□□□ 1.79
SLC1A4-201ENST00000234256 PELP1Q8IZL8 1130 aaKnown RBP26.23■■□□□ 1.79
SLC1A4-201ENST00000234256 ZEB1P37275 1124 aaPredicted RBP26.2■■□□□ 1.78
SLC1A4-201ENST00000234256 CHIC1Q5VXU3 224 aa26.15■■□□□ 1.78
SLC1A4-201ENST00000234256 CENPBP07199 599 aaPredicted RBP26.04■■□□□ 1.76
SLC1A4-201ENST00000234256 ATP1B4Q9UN42 357 aaPredicted RBP26.04■■□□□ 1.76
SLC1A4-201ENST00000234256 HRCP23327 699 aa26.02■■□□□ 1.76
SLC1A4-201ENST00000234256 TRIM26Q12899 539 aaPredicted RBP25.96■■□□□ 1.75
SLC1A4-201ENST00000234256 YTHDC1Q96MU7 727 aaKnown RBP25.93■■□□□ 1.74
SLC1A4-201ENST00000234256 ITGAEP38570 1179 aa25.53■■□□□ 1.68
SLC1A4-201ENST00000234256 HNRNPUL2Q1KMD3 747 aaKnown RBP25.52■■□□□ 1.68
SLC1A4-201ENST00000234256 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.46■■□□□ 1.67
SLC1A4-201ENST00000234256 ERICH6Q7L0X2 663 aa25.31■■□□□ 1.64
SLC1A4-201ENST00000234256 NEFLP07196 543 aa25.27■■□□□ 1.64
SLC1A4-201ENST00000234256 DIEXFQ68CQ4 756 aaKnown RBP25.08■■□□□ 1.61
SLC1A4-201ENST00000234256 PABPN1Q86U42 306 aaKnown RBP eCLIP25.05■■□□□ 1.6
SLC1A4-201ENST00000234256 CNGB1Q14028 1251 aaPredicted RBP25.05■■□□□ 1.6
SLC1A4-201ENST00000234256 POLR3GLQ9BT43 218 aa25■■□□□ 1.59
SLC1A4-201ENST00000234256 ABCC9O60706 1549 aa24.98■■□□□ 1.59
SLC1A4-201ENST00000234256 CCDC180Q9P1Z9 1646 aa24.85■■□□□ 1.57
SLC1A4-201ENST00000234256 ZCCHC6Q5VYS8 1495 aaKnown RBP24.83■■□□□ 1.56
SLC1A4-201ENST00000234256 FAM50AQ14320 339 aaKnown RBP24.73■■□□□ 1.55
SLC1A4-201ENST00000234256 GTF3C3Q9Y5Q9 886 aa24.7■■□□□ 1.54
SLC1A4-201ENST00000234256 NEUROD1Q13562 356 aa24.66■■□□□ 1.54
SLC1A4-201ENST00000234256 MYT1LQ9UL68 1186 aa24.6■■□□□ 1.53
SLC1A4-201ENST00000234256 MYT1Q01538 1121 aa24.58■■□□□ 1.53
SLC1A4-201ENST00000234256 CSRNP3Q8WYN3 585 aa24.53■■□□□ 1.52
SLC1A4-201ENST00000234256 BCANQ96GW7 911 aa24.52■■□□□ 1.52
SLC1A4-201ENST00000234256 ZNF316A6NFI3 1004 aaPredicted RBP24.47■■□□□ 1.51
SLC1A4-201ENST00000234256 TRIM52Q96A61 297 aa24.45■■□□□ 1.51
SLC1A4-201ENST00000234256 P3H3Q8IVL6 736 aa24.42■■□□□ 1.5
SLC1A4-201ENST00000234256 ACIN1Q9UKV3 1341 aaKnown RBP24.34■■□□□ 1.49
SLC1A4-201ENST00000234256 ZNF326Q5BKZ1 582 aaKnown RBP24.27■■□□□ 1.48
SLC1A4-201ENST00000234256 ARID3CA6NKF2 412 aa24.27■■□□□ 1.48
SLC1A4-201ENST00000234256 DAXXQ9UER7 740 aaPredicted RBP24.25■■□□□ 1.47
SLC1A4-201ENST00000234256 SLC4A1APQ9BWU0 796 aaKnown RBP24.2■■□□□ 1.47
SLC1A4-201ENST00000234256 MYO15BQ96JP2 1530 aa24.19■■□□□ 1.46
SLC1A4-201ENST00000234256 ANP32CO43423 234 aa24.19■■□□□ 1.46
SLC1A4-201ENST00000234256 DCAF1Q9Y4B6 1507 aa24.15■■□□□ 1.46
SLC1A4-201ENST00000234256 SCRIBQ14160 1630 aa24.12■■□□□ 1.45
SLC1A4-201ENST00000234256 FBLN2P98095 1184 aa24.11■■□□□ 1.45
SLC1A4-201ENST00000234256 CLSPNQ9HAW4 1339 aa24■■□□□ 1.43
SLC1A4-201ENST00000234256 DDX10Q13206 875 aaKnown RBP23.93■■□□□ 1.42
SLC1A4-201ENST00000234256 RTL5Q5HYW3 569 aaPredicted RBP23.91■■□□□ 1.42
SLC1A4-201ENST00000234256 SCAF1Q9H7N4 1312 aaKnown RBP23.89■■□□□ 1.41
SLC1A4-201ENST00000234256 ZNF777Q9ULD5 760 aaPredicted RBP23.87■■□□□ 1.41
SLC1A4-201ENST00000234256 CDK11AQ9UQ88 783 aaPredicted RBP23.87■■□□□ 1.41
SLC1A4-201ENST00000234256 MIER1Q8N108 512 aa23.84■■□□□ 1.41
SLC1A4-201ENST00000234256 FKBP8Q14318 412 aa23.82■■□□□ 1.4
SLC1A4-201ENST00000234256 HIRIP3Q9BW71 556 aaPredicted RBP23.8■■□□□ 1.4
SLC1A4-201ENST00000234256 RSF1Q96T23 1441 aaPredicted RBP23.77■■□□□ 1.4
SLC1A4-201ENST00000234256 CHIC2Q9UKJ5 165 aa23.74■■□□□ 1.39
SLC1A4-201ENST00000234256 HNRNPUQ00839 825 aaKnown RBP eCLIP23.71■■□□□ 1.39
SLC1A4-201ENST00000234256 NACADO15069 1562 aa23.71■■□□□ 1.39
SLC1A4-201ENST00000234256 TONSLQ96HA7 1378 aa23.7■■□□□ 1.38
SLC1A4-201ENST00000234256 RB1CC1Q8TDY2 1594 aa23.66■■□□□ 1.38
SLC1A4-201ENST00000234256 FAM9BQ8IZU0 186 aa23.65■■□□□ 1.38
SLC1A4-201ENST00000234256 BCL11AQ9H165 835 aa23.64■■□□□ 1.37
SLC1A4-201ENST00000234256 CLIP1P30622 1438 aa23.61■■□□□ 1.37
SLC1A4-201ENST00000234256 SALL2Q9Y467 1007 aaPredicted RBP23.6■■□□□ 1.37
SLC1A4-201ENST00000234256 CEP162Q5TB80 1403 aa23.54■■□□□ 1.36
SLC1A4-201ENST00000234256 NPM2Q86SE8 214 aaKnown RBP23.53■■□□□ 1.36
SLC1A4-201ENST00000234256 IRX6P78412 446 aaPredicted RBP23.5■■□□□ 1.35
SLC1A4-201ENST00000234256 CANXP27824 592 aaKnown RBP23.45■■□□□ 1.34
SLC1A4-201ENST00000234256 RRP7BPQ9NSQ0 103 aa23.41■■□□□ 1.34
SLC1A4-201ENST00000234256 SENP3-EIF4A1A0A087X0R7 540 aa23.4■■□□□ 1.34
SLC1A4-201ENST00000234256 MTUS2Q5JR59 1369 aa23.39■■□□□ 1.33
SLC1A4-201ENST00000234256 ANP32AP39687 249 aaKnown RBP23.39■■□□□ 1.33
SLC1A4-201ENST00000234256 KDM2AQ9Y2K7 1162 aa23.39■■□□□ 1.33
SLC1A4-201ENST00000234256 MRS2Q9HD23 443 aa23.38■■□□□ 1.33
SLC1A4-201ENST00000234256 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.36■■□□□ 1.33
SLC1A4-201ENST00000234256 CECR2Q9BXF3 1484 aa23.34■■□□□ 1.33
SLC1A4-201ENST00000234256 TMC1Q8TDI8 760 aa23.33■■□□□ 1.33
SLC1A4-201ENST00000234256 CHGAP10645 457 aaKnown RBP23.33■■□□□ 1.33
SLC1A4-201ENST00000234256 WRNQ14191 1432 aaPredicted RBP eCLIP23.32■■□□□ 1.32
SLC1A4-201ENST00000234256 GOLGA3Q08378 1498 aa23.3■■□□□ 1.32
SLC1A4-201ENST00000234256 SLC24A1O60721 1099 aa23.28■■□□□ 1.32
SLC1A4-201ENST00000234256 TNIKQ9UKE5 1360 aa23.28■■□□□ 1.32
SLC1A4-201ENST00000234256 SIN3AQ96ST3 1273 aa23.28■■□□□ 1.32
SLC1A4-201ENST00000234256 CCDC136Q96JN2 1154 aa23.26■■□□□ 1.31
SLC1A4-201ENST00000234256 ZBTB47Q9UFB7 747 aaPredicted RBP23.24■■□□□ 1.31
SLC1A4-201ENST00000234256 EEA1Q15075 1411 aa23.23■■□□□ 1.31
SLC1A4-201ENST00000234256 EIF4G2P78344 907 aaKnown RBP eCLIP23.21■■□□□ 1.31
SLC1A4-201ENST00000234256 BAZ1AQ9NRL2 1556 aaPredicted RBP23.21■■□□□ 1.31
SLC1A4-201ENST00000234256 TSPY4P0CV99 314 aa23.2■■□□□ 1.3
SLC1A4-201ENST00000234256 TSPY10P0CW01 314 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms