RNA–Protein interactions for RNA: ENST00000228918.8

LTBR-201, Transcript of lymphotoxin beta receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LTBR, Length 2,260 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-201ENST00000228918 NISCHQ9Y2I1 1504 aa33.89■■■■□ 3.02
LTBR-201ENST00000228918 CCDC180Q9P1Z9 1646 aa28.92■■■□□ 2.22
LTBR-201ENST00000228918 ZCCHC6Q5VYS8 1495 aaKnown RBP28.72■■■□□ 2.19
LTBR-201ENST00000228918 SHROOM4Q9ULL8 1493 aa28.72■■■□□ 2.19
LTBR-201ENST00000228918 SUPT5HO00267 1087 aaKnown RBP28.16■■■□□ 2.1
LTBR-201ENST00000228918 DCAF1Q9Y4B6 1507 aa27.9■■■□□ 2.06
LTBR-201ENST00000228918 DCAF8L2P0C7V8 631 aa27.79■■■□□ 2.04
LTBR-201ENST00000228918 CHIC1Q5VXU3 224 aa27.49■■□□□ 1.99
LTBR-201ENST00000228918 MYO15BQ96JP2 1530 aa27.45■■□□□ 1.98
LTBR-201ENST00000228918 ABCC9O60706 1549 aa27.14■■□□□ 1.94
LTBR-201ENST00000228918 SCRIBQ14160 1630 aa26.96■■□□□ 1.91
LTBR-201ENST00000228918 RSF1Q96T23 1441 aaPredicted RBP26.79■■□□□ 1.88
LTBR-201ENST00000228918 HRCP23327 699 aa26.72■■□□□ 1.87
LTBR-201ENST00000228918 NACADO15069 1562 aa26.66■■□□□ 1.86
LTBR-201ENST00000228918 PCGF6Q9BYE7 350 aa26.6■■□□□ 1.85
LTBR-201ENST00000228918 LOC105371045A0A1W2PR82 267 aa26.59■■□□□ 1.85
LTBR-201ENST00000228918 RB1CC1Q8TDY2 1594 aa26.57■■□□□ 1.84
LTBR-201ENST00000228918 CECR2Q9BXF3 1484 aa26.36■■□□□ 1.81
LTBR-201ENST00000228918 MROH2BQ7Z745 1585 aa26.32■■□□□ 1.8
LTBR-201ENST00000228918 TRIM41Q8WV44 630 aa26.28■■□□□ 1.8
LTBR-201ENST00000228918 WIZO95785 1651 aa26.2■■□□□ 1.78
LTBR-201ENST00000228918 TRIM26Q12899 539 aaPredicted RBP26.17■■□□□ 1.78
LTBR-201ENST00000228918 BAZ1AQ9NRL2 1556 aaPredicted RBP26.11■■□□□ 1.77
LTBR-201ENST00000228918 PPARGC1BQ86YN6 1023 aaKnown RBP26.05■■□□□ 1.76
LTBR-201ENST00000228918 FAM9AQ8IZU1 332 aaPredicted RBP25.98■■□□□ 1.75
LTBR-201ENST00000228918 EIF4G1Q04637 1599 aaKnown RBP25.97■■□□□ 1.75
LTBR-201ENST00000228918 UNC13AQ9UPW8 1703 aa25.87■■□□□ 1.73
LTBR-201ENST00000228918 TOP2AP11388 1531 aaKnown RBP25.84■■□□□ 1.73
LTBR-201ENST00000228918 SMARCA4P51532 1647 aa25.83■■□□□ 1.73
LTBR-201ENST00000228918 EHMT2Q96KQ7 1210 aa25.68■■□□□ 1.7
LTBR-201ENST00000228918 SMARCA2P51531 1590 aa25.68■■□□□ 1.7
LTBR-201ENST00000228918 CCDC88BA6NC98 1476 aa25.65■■□□□ 1.7
LTBR-201ENST00000228918 ZEB1P37275 1124 aaPredicted RBP25.65■■□□□ 1.7
LTBR-201ENST00000228918 ABCC8Q09428 1581 aa25.59■■□□□ 1.69
LTBR-201ENST00000228918 BICRAQ9NZM4 1560 aa25.49■■□□□ 1.67
LTBR-201ENST00000228918 PEG3Q9GZU2 1588 aa25.39■■□□□ 1.65
LTBR-201ENST00000228918 SOGA1O94964 1423 aa25.32■■□□□ 1.64
LTBR-201ENST00000228918 WRNQ14191 1432 aaPredicted RBP eCLIP25.31■■□□□ 1.64
LTBR-201ENST00000228918 EEA1Q15075 1411 aa25.31■■□□□ 1.64
LTBR-201ENST00000228918 PABPN1Q86U42 306 aaKnown RBP eCLIP25.29■■□□□ 1.64
LTBR-201ENST00000228918 CEP162Q5TB80 1403 aa25.26■■□□□ 1.63
LTBR-201ENST00000228918 TNIKQ9UKE5 1360 aa25.24■■□□□ 1.63
LTBR-201ENST00000228918 RUSC2Q8N2Y8 1516 aa25.19■■□□□ 1.62
LTBR-201ENST00000228918 CSRNP3Q8WYN3 585 aa25.16■■□□□ 1.62
LTBR-201ENST00000228918 GOLGA3Q08378 1498 aa25.11■■□□□ 1.61
LTBR-201ENST00000228918 ATAD2BQ9ULI0 1458 aa25.11■■□□□ 1.61
LTBR-201ENST00000228918 PELP1Q8IZL8 1130 aaKnown RBP25.1■■□□□ 1.61
LTBR-201ENST00000228918 SYNJ1O43426 1573 aa25.08■■□□□ 1.61
LTBR-201ENST00000228918 BAZ1BQ9UIG0 1483 aaKnown RBP25.04■■□□□ 1.6
LTBR-201ENST00000228918 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.04■■□□□ 1.6
LTBR-201ENST00000228918 KIF21BO75037 1637 aa25■■□□□ 1.59
LTBR-201ENST00000228918 UBTFP17480 764 aaKnown RBP25■■□□□ 1.59
LTBR-201ENST00000228918 CCER1Q8TC90 406 aaPredicted RBP24.99■■□□□ 1.59
LTBR-201ENST00000228918 CEP164Q9UPV0 1460 aa24.97■■□□□ 1.59
LTBR-201ENST00000228918 TTBK1Q5TCY1 1321 aaPredicted RBP24.9■■□□□ 1.58
LTBR-201ENST00000228918 TOP2BQ02880 1626 aa24.81■■□□□ 1.56
LTBR-201ENST00000228918 CLIP1P30622 1438 aa24.78■■□□□ 1.56
LTBR-201ENST00000228918 BIVM-ERCC5R4GMW8 1640 aa24.75■■□□□ 1.55
LTBR-201ENST00000228918 RAPGEF2Q9Y4G8 1499 aa24.74■■□□□ 1.55
LTBR-201ENST00000228918 VPS8Q8N3P4 1428 aa24.72■■□□□ 1.55
LTBR-201ENST00000228918 HMGXB3Q12766 1538 aa24.69■■□□□ 1.54
LTBR-201ENST00000228918 NCAPD3P42695 1498 aa24.63■■□□□ 1.53
LTBR-201ENST00000228918 SCAF1Q9H7N4 1312 aaKnown RBP24.59■■□□□ 1.53
LTBR-201ENST00000228918 ERICH3Q5RHP9 1530 aa24.59■■□□□ 1.53
LTBR-201ENST00000228918 PRXQ9BXM0 1461 aa24.54■■□□□ 1.52
LTBR-201ENST00000228918 DIEXFQ68CQ4 756 aaKnown RBP24.54■■□□□ 1.52
LTBR-201ENST00000228918 CUX1P39880 1505 aa24.52■■□□□ 1.52
LTBR-201ENST00000228918 APLP2Q06481 763 aa24.46■■□□□ 1.51
LTBR-201ENST00000228918 HNRNPUL2Q1KMD3 747 aaKnown RBP24.45■■□□□ 1.5
LTBR-201ENST00000228918 CFTRP13569 1480 aa24.45■■□□□ 1.5
LTBR-201ENST00000228918 ARAP1Q96P48 1450 aa24.42■■□□□ 1.5
LTBR-201ENST00000228918 RANGAP1P46060 587 aaPredicted RBP24.39■■□□□ 1.5
LTBR-201ENST00000228918 PRDM2Q13029 1718 aa24.39■■□□□ 1.5
LTBR-201ENST00000228918 ACIN1Q9UKV3 1341 aaKnown RBP24.39■■□□□ 1.49
LTBR-201ENST00000228918 KIF27Q86VH2 1401 aa24.39■■□□□ 1.49
LTBR-201ENST00000228918 ZNF316A6NFI3 1004 aaPredicted RBP24.38■■□□□ 1.49
LTBR-201ENST00000228918 NEUROD1Q13562 356 aa24.32■■□□□ 1.48
LTBR-201ENST00000228918 CENPBP07199 599 aaPredicted RBP24.24■■□□□ 1.47
LTBR-201ENST00000228918 ARHGAP35Q9NRY4 1499 aa24.19■■□□□ 1.46
LTBR-201ENST00000228918 KANK4Q5T7N3 995 aaPredicted RBP24.17■■□□□ 1.46
LTBR-201ENST00000228918 RRBP1Q9P2E9 1410 aaKnown RBP24.16■■□□□ 1.46
LTBR-201ENST00000228918 CLSPNQ9HAW4 1339 aa24.13■■□□□ 1.45
LTBR-201ENST00000228918 CUX2O14529 1486 aa24.13■■□□□ 1.45
LTBR-201ENST00000228918 CADPSQ9ULU8 1353 aa24.12■■□□□ 1.45
LTBR-201ENST00000228918 MYT1Q01538 1121 aa24.12■■□□□ 1.45
LTBR-201ENST00000228918 DHX57Q6P158 1386 aaKnown RBP24.11■■□□□ 1.45
LTBR-201ENST00000228918 IGF1RP08069 1367 aa24.08■■□□□ 1.45
LTBR-201ENST00000228918 FGD5Q6ZNL6 1462 aa24.06■■□□□ 1.44
LTBR-201ENST00000228918 GTF3C3Q9Y5Q9 886 aa24.05■■□□□ 1.44
LTBR-201ENST00000228918 CCNB3Q8WWL7 1395 aa24■■□□□ 1.43
LTBR-201ENST00000228918 MIER1Q8N108 512 aa24■■□□□ 1.43
LTBR-201ENST00000228918 MAP3K1Q13233 1512 aa23.99■■□□□ 1.43
LTBR-201ENST00000228918 CARMIL1Q5VZK9 1371 aa23.98■■□□□ 1.43
LTBR-201ENST00000228918 TIAM1Q13009 1591 aa23.98■■□□□ 1.43
LTBR-201ENST00000228918 CC2D2AQ9P2K1 1620 aa23.97■■□□□ 1.43
LTBR-201ENST00000228918 FANCD2Q9BXW9 1451 aa23.9■■□□□ 1.42
LTBR-201ENST00000228918 YTHDC1Q96MU7 727 aaKnown RBP23.89■■□□□ 1.41
LTBR-201ENST00000228918 DNMBPQ6XZF7 1577 aa23.86■■□□□ 1.41
LTBR-201ENST00000228918 CFAP43Q8NDM7 1665 aa23.86■■□□□ 1.41
LTBR-201ENST00000228918 LRRC9Q6ZRR7 1453 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms