RNA–Protein interactions for RNA: ENST00000226574.8

NFKB1-201, Transcript of nuclear factor kappa B subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NFKB1, Length 4,085 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-201ENST00000226574 NISCHQ9Y2I1 1504 aa23.96■■□□□ 1.43
NFKB1-201ENST00000226574 DCAF8L2P0C7V8 631 aa23.84■■□□□ 1.41
NFKB1-201ENST00000226574 SUPT5HO00267 1087 aaKnown RBP23.53■■□□□ 1.36
NFKB1-201ENST00000226574 SHROOM4Q9ULL8 1493 aa23.3■■□□□ 1.32
NFKB1-201ENST00000226574 EHMT2Q96KQ7 1210 aa22.69■■□□□ 1.22
NFKB1-201ENST00000226574 PCGF6Q9BYE7 350 aa22.48■■□□□ 1.19
NFKB1-201ENST00000226574 FAM9AQ8IZU1 332 aaPredicted RBP22.14■■□□□ 1.13
NFKB1-201ENST00000226574 TTBK1Q5TCY1 1321 aaPredicted RBP21.92■■□□□ 1.1
NFKB1-201ENST00000226574 PPARGC1BQ86YN6 1023 aaKnown RBP21.72■■□□□ 1.07
NFKB1-201ENST00000226574 LOC105371045A0A1W2PR82 267 aa21.66■■□□□ 1.06
NFKB1-201ENST00000226574 HRCP23327 699 aa21.65■■□□□ 1.06
NFKB1-201ENST00000226574 CHIC1Q5VXU3 224 aa21.55■■□□□ 1.04
NFKB1-201ENST00000226574 TRIM41Q8WV44 630 aa21.5■■□□□ 1.03
NFKB1-201ENST00000226574 CCER1Q8TC90 406 aaPredicted RBP21.36■■□□□ 1.01
NFKB1-201ENST00000226574 RANGAP1P46060 587 aaPredicted RBP21.33■■□□□ 1
NFKB1-201ENST00000226574 TRIM26Q12899 539 aaPredicted RBP21.24■□□□□ 0.99
NFKB1-201ENST00000226574 ZEB1P37275 1124 aaPredicted RBP21.19■□□□□ 0.98
NFKB1-201ENST00000226574 YTHDC1Q96MU7 727 aaKnown RBP21.17■□□□□ 0.98
NFKB1-201ENST00000226574 APLP2Q06481 763 aa21.1■□□□□ 0.97
NFKB1-201ENST00000226574 CENPBP07199 599 aaPredicted RBP21.04■□□□□ 0.96
NFKB1-201ENST00000226574 UBTFP17480 764 aaKnown RBP20.99■□□□□ 0.95
NFKB1-201ENST00000226574 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.91■□□□□ 0.94
NFKB1-201ENST00000226574 PELP1Q8IZL8 1130 aaKnown RBP20.84■□□□□ 0.93
NFKB1-201ENST00000226574 HNRNPUL2Q1KMD3 747 aaKnown RBP20.68■□□□□ 0.9
NFKB1-201ENST00000226574 ATP1B4Q9UN42 357 aaPredicted RBP20.62■□□□□ 0.89
NFKB1-201ENST00000226574 DIEXFQ68CQ4 756 aaKnown RBP20.56■□□□□ 0.88
NFKB1-201ENST00000226574 ITGAEP38570 1179 aa20.52■□□□□ 0.88
NFKB1-201ENST00000226574 GTF3C3Q9Y5Q9 886 aa20.47■□□□□ 0.87
NFKB1-201ENST00000226574 MYO15BQ96JP2 1530 aa20.44■□□□□ 0.86
NFKB1-201ENST00000226574 ERICH6Q7L0X2 663 aa20.19■□□□□ 0.82
NFKB1-201ENST00000226574 ACIN1Q9UKV3 1341 aaKnown RBP20.19■□□□□ 0.82
NFKB1-201ENST00000226574 SCAF1Q9H7N4 1312 aaKnown RBP20.18■□□□□ 0.82
NFKB1-201ENST00000226574 NEFLP07196 543 aa20.17■□□□□ 0.82
NFKB1-201ENST00000226574 CNGB1Q14028 1251 aaPredicted RBP20.13■□□□□ 0.81
NFKB1-201ENST00000226574 NEUROD1Q13562 356 aa20.12■□□□□ 0.81
NFKB1-201ENST00000226574 BCANQ96GW7 911 aa20.08■□□□□ 0.8
NFKB1-201ENST00000226574 MYT1Q01538 1121 aa20.04■□□□□ 0.8
NFKB1-201ENST00000226574 PABPN1Q86U42 306 aaKnown RBP eCLIP20.03■□□□□ 0.8
NFKB1-201ENST00000226574 ZNF316A6NFI3 1004 aaPredicted RBP20.02■□□□□ 0.79
NFKB1-201ENST00000226574 DCAF1Q9Y4B6 1507 aa20.01■□□□□ 0.79
NFKB1-201ENST00000226574 ABCC9O60706 1549 aa19.98■□□□□ 0.79
NFKB1-201ENST00000226574 ZCCHC6Q5VYS8 1495 aaKnown RBP19.97■□□□□ 0.79
NFKB1-201ENST00000226574 POLR3GLQ9BT43 218 aa19.91■□□□□ 0.78
NFKB1-201ENST00000226574 CSRNP3Q8WYN3 585 aa19.83■□□□□ 0.76
NFKB1-201ENST00000226574 FAM50AQ14320 339 aaKnown RBP19.81■□□□□ 0.76
NFKB1-201ENST00000226574 MIER1Q8N108 512 aa19.74■□□□□ 0.75
NFKB1-201ENST00000226574 P3H3Q8IVL6 736 aa19.63■□□□□ 0.73
NFKB1-201ENST00000226574 SCRIBQ14160 1630 aa19.63■□□□□ 0.73
NFKB1-201ENST00000226574 HIRIP3Q9BW71 556 aaPredicted RBP19.52■□□□□ 0.72
NFKB1-201ENST00000226574 RSF1Q96T23 1441 aaPredicted RBP19.52■□□□□ 0.71
NFKB1-201ENST00000226574 DDX10Q13206 875 aaKnown RBP19.51■□□□□ 0.71
NFKB1-201ENST00000226574 FKBP8Q14318 412 aa19.49■□□□□ 0.71
NFKB1-201ENST00000226574 TRIM52Q96A61 297 aa19.48■□□□□ 0.71
NFKB1-201ENST00000226574 ANP32CO43423 234 aa19.46■□□□□ 0.71
NFKB1-201ENST00000226574 ARID3CA6NKF2 412 aa19.43■□□□□ 0.7
NFKB1-201ENST00000226574 ZNF326Q5BKZ1 582 aaKnown RBP19.39■□□□□ 0.69
NFKB1-201ENST00000226574 CCDC180Q9P1Z9 1646 aa19.33■□□□□ 0.68
NFKB1-201ENST00000226574 IRX6P78412 446 aaPredicted RBP19.3■□□□□ 0.68
NFKB1-201ENST00000226574 CEP162Q5TB80 1403 aa19.28■□□□□ 0.68
NFKB1-201ENST00000226574 CDK11AQ9UQ88 783 aaPredicted RBP19.28■□□□□ 0.68
NFKB1-201ENST00000226574 HNRNPUQ00839 825 aaKnown RBP eCLIP19.24■□□□□ 0.67
NFKB1-201ENST00000226574 DAXXQ9UER7 740 aaPredicted RBP19.21■□□□□ 0.67
NFKB1-201ENST00000226574 SENP3-EIF4A1A0A087X0R7 540 aa19.2■□□□□ 0.66
NFKB1-201ENST00000226574 CECR2Q9BXF3 1484 aa19.19■□□□□ 0.66
NFKB1-201ENST00000226574 RTL5Q5HYW3 569 aaPredicted RBP19.17■□□□□ 0.66
NFKB1-201ENST00000226574 CLIP1P30622 1438 aa19.17■□□□□ 0.66
NFKB1-201ENST00000226574 FAM9BQ8IZU0 186 aa19.16■□□□□ 0.66
NFKB1-201ENST00000226574 MYT1LQ9UL68 1186 aa19.14■□□□□ 0.65
NFKB1-201ENST00000226574 CHIC2Q9UKJ5 165 aa19.12■□□□□ 0.65
NFKB1-201ENST00000226574 SOGA1O94964 1423 aa19.1■□□□□ 0.65
NFKB1-201ENST00000226574 SALL2Q9Y467 1007 aaPredicted RBP19.09■□□□□ 0.65
NFKB1-201ENST00000226574 SIN3AQ96ST3 1273 aa19.06■□□□□ 0.64
NFKB1-201ENST00000226574 NPM2Q86SE8 214 aaKnown RBP19.06■□□□□ 0.64
NFKB1-201ENST00000226574 SUPT16HQ9Y5B9 1047 aaKnown RBP19.05■□□□□ 0.64
NFKB1-201ENST00000226574 RB1CC1Q8TDY2 1594 aa19.05■□□□□ 0.64
NFKB1-201ENST00000226574 TONSLQ96HA7 1378 aa19.04■□□□□ 0.64
NFKB1-201ENST00000226574 CLSPNQ9HAW4 1339 aa19.04■□□□□ 0.64
NFKB1-201ENST00000226574 SLC4A1APQ9BWU0 796 aaKnown RBP19.04■□□□□ 0.64
NFKB1-201ENST00000226574 TNIKQ9UKE5 1360 aa19■□□□□ 0.63
NFKB1-201ENST00000226574 NBR1Q14596 966 aa18.99■□□□□ 0.63
NFKB1-201ENST00000226574 ZNF777Q9ULD5 760 aaPredicted RBP18.98■□□□□ 0.63
NFKB1-201ENST00000226574 FBLN2P98095 1184 aa18.97■□□□□ 0.63
NFKB1-201ENST00000226574 GOLGA3Q08378 1498 aa18.92■□□□□ 0.62
NFKB1-201ENST00000226574 WRNQ14191 1432 aaPredicted RBP eCLIP18.9■□□□□ 0.62
NFKB1-201ENST00000226574 CCDC88BA6NC98 1476 aa18.9■□□□□ 0.62
NFKB1-201ENST00000226574 MRS2Q9HD23 443 aa18.9■□□□□ 0.62
NFKB1-201ENST00000226574 KANK4Q5T7N3 995 aaPredicted RBP18.89■□□□□ 0.61
NFKB1-201ENST00000226574 RRP7BPQ9NSQ0 103 aa18.89■□□□□ 0.61
NFKB1-201ENST00000226574 KCNH8Q96L42 1107 aa18.89■□□□□ 0.61
NFKB1-201ENST00000226574 ABCC8Q09428 1581 aa18.88■□□□□ 0.61
NFKB1-201ENST00000226574 ANP32EQ9BTT0 268 aa18.87■□□□□ 0.61
NFKB1-201ENST00000226574 MROH2BQ7Z745 1585 aa18.85■□□□□ 0.61
NFKB1-201ENST00000226574 BCL11AQ9H165 835 aa18.85■□□□□ 0.61
NFKB1-201ENST00000226574 ANP32AP39687 249 aaKnown RBP18.84■□□□□ 0.61
NFKB1-201ENST00000226574 CCDC136Q96JN2 1154 aa18.8■□□□□ 0.6
NFKB1-201ENST00000226574 KDM2AQ9Y2K7 1162 aa18.76■□□□□ 0.59
NFKB1-201ENST00000226574 EEA1Q15075 1411 aa18.76■□□□□ 0.59
NFKB1-201ENST00000226574 TMC1Q8TDI8 760 aa18.73■□□□□ 0.59
NFKB1-201ENST00000226574 TSHZ2Q9NRE2 1034 aa18.73■□□□□ 0.59
NFKB1-201ENST00000226574 MTUS2Q5JR59 1369 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms