RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 DCAF8L2P0C7V8 631 aa33.25■■■□□ 2.91
CLIP2-201ENST00000223398 NISCHQ9Y2I1 1504 aa31.19■■■□□ 2.58
CLIP2-201ENST00000223398 SUPT5HO00267 1087 aaKnown RBP31.03■■■□□ 2.56
CLIP2-201ENST00000223398 SHROOM4Q9ULL8 1493 aa30.69■■■□□ 2.5
CLIP2-201ENST00000223398 EHMT2Q96KQ7 1210 aa30.32■■■□□ 2.44
CLIP2-201ENST00000223398 FAM9AQ8IZU1 332 aaPredicted RBP29.37■■■□□ 2.29
CLIP2-201ENST00000223398 APLP2Q06481 763 aa29.32■■■□□ 2.28
CLIP2-201ENST00000223398 TTBK1Q5TCY1 1321 aaPredicted RBP29.16■■■□□ 2.26
CLIP2-201ENST00000223398 RANGAP1P46060 587 aaPredicted RBP29.09■■■□□ 2.25
CLIP2-201ENST00000223398 ATP1B4Q9UN42 357 aaPredicted RBP28.77■■■□□ 2.2
CLIP2-201ENST00000223398 TRIM41Q8WV44 630 aa28.62■■■□□ 2.17
CLIP2-201ENST00000223398 PCGF6Q9BYE7 350 aa28.42■■■□□ 2.14
CLIP2-201ENST00000223398 UBTFP17480 764 aaKnown RBP28.41■■■□□ 2.14
CLIP2-201ENST00000223398 PELP1Q8IZL8 1130 aaKnown RBP28.18■■■□□ 2.1
CLIP2-201ENST00000223398 CCER1Q8TC90 406 aaPredicted RBP28.01■■■□□ 2.07
CLIP2-201ENST00000223398 PPARGC1BQ86YN6 1023 aaKnown RBP27.95■■■□□ 2.06
CLIP2-201ENST00000223398 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.83■■■□□ 2.05
CLIP2-201ENST00000223398 HNRNPUL2Q1KMD3 747 aaKnown RBP27.83■■■□□ 2.05
CLIP2-201ENST00000223398 MYT1LQ9UL68 1186 aa27.82■■■□□ 2.04
CLIP2-201ENST00000223398 PABPN1Q86U42 306 aaKnown RBP eCLIP27.64■■■□□ 2.01
CLIP2-201ENST00000223398 ABCC9O60706 1549 aa27.63■■■□□ 2.01
CLIP2-201ENST00000223398 ITGAEP38570 1179 aa27.6■■■□□ 2.01
CLIP2-201ENST00000223398 ZEB1P37275 1124 aaPredicted RBP27.52■■■□□ 2
CLIP2-201ENST00000223398 CHIC1Q5VXU3 224 aa27.42■■□□□ 1.98
CLIP2-201ENST00000223398 CENPBP07199 599 aaPredicted RBP27.37■■□□□ 1.97
CLIP2-201ENST00000223398 YTHDC1Q96MU7 727 aaKnown RBP27.33■■□□□ 1.97
CLIP2-201ENST00000223398 POLR3GLQ9BT43 218 aa27.31■■□□□ 1.96
CLIP2-201ENST00000223398 LOC105371045A0A1W2PR82 267 aa27.3■■□□□ 1.96
CLIP2-201ENST00000223398 ERICH6Q7L0X2 663 aa27.18■■□□□ 1.94
CLIP2-201ENST00000223398 CNGB1Q14028 1251 aaPredicted RBP27.12■■□□□ 1.93
CLIP2-201ENST00000223398 NEFLP07196 543 aa27.07■■□□□ 1.92
CLIP2-201ENST00000223398 TRIM26Q12899 539 aaPredicted RBP27.06■■□□□ 1.92
CLIP2-201ENST00000223398 FBLN2P98095 1184 aa27■■□□□ 1.91
CLIP2-201ENST00000223398 SLC4A1APQ9BWU0 796 aaKnown RBP26.93■■□□□ 1.9
CLIP2-201ENST00000223398 FAM50AQ14320 339 aaKnown RBP26.84■■□□□ 1.89
CLIP2-201ENST00000223398 TRIM52Q96A61 297 aa26.69■■□□□ 1.86
CLIP2-201ENST00000223398 ARID3CA6NKF2 412 aa26.62■■□□□ 1.85
CLIP2-201ENST00000223398 HRCP23327 699 aa26.55■■□□□ 1.84
CLIP2-201ENST00000223398 P3H3Q8IVL6 736 aa26.52■■□□□ 1.84
CLIP2-201ENST00000223398 NEUROD1Q13562 356 aa26.48■■□□□ 1.83
CLIP2-201ENST00000223398 ZNF326Q5BKZ1 582 aaKnown RBP26.44■■□□□ 1.82
CLIP2-201ENST00000223398 DAXXQ9UER7 740 aaPredicted RBP26.3■■□□□ 1.8
CLIP2-201ENST00000223398 BCANQ96GW7 911 aa26.28■■□□□ 1.8
CLIP2-201ENST00000223398 ZNF777Q9ULD5 760 aaPredicted RBP26.25■■□□□ 1.79
CLIP2-201ENST00000223398 SCRIBQ14160 1630 aa26.23■■□□□ 1.79
CLIP2-201ENST00000223398 PLPPR3Q6T4P5 718 aa26.14■■□□□ 1.77
CLIP2-201ENST00000223398 CSRNP3Q8WYN3 585 aa26.1■■□□□ 1.77
CLIP2-201ENST00000223398 CLSPNQ9HAW4 1339 aa26.05■■□□□ 1.76
CLIP2-201ENST00000223398 DIEXFQ68CQ4 756 aaKnown RBP26.05■■□□□ 1.76
CLIP2-201ENST00000223398 SLC24A1O60721 1099 aa26.03■■□□□ 1.76
CLIP2-201ENST00000223398 ESF1Q9H501 851 aaKnown RBP25.98■■□□□ 1.75
CLIP2-201ENST00000223398 CDK11AQ9UQ88 783 aaPredicted RBP25.93■■□□□ 1.74
CLIP2-201ENST00000223398 NPM1P06748 294 aaKnown RBP eCLIP25.93■■□□□ 1.74
CLIP2-201ENST00000223398 CHGAP10645 457 aaKnown RBP25.86■■□□□ 1.73
CLIP2-201ENST00000223398 BCL11AQ9H165 835 aa25.85■■□□□ 1.73
CLIP2-201ENST00000223398 STAG3Q9UJ98 1225 aa25.81■■□□□ 1.72
CLIP2-201ENST00000223398 ANP32CO43423 234 aa25.8■■□□□ 1.72
CLIP2-201ENST00000223398 ZNF316A6NFI3 1004 aaPredicted RBP25.7■■□□□ 1.71
CLIP2-201ENST00000223398 CHMP7Q8WUX9 453 aaPredicted RBP25.68■■□□□ 1.7
CLIP2-201ENST00000223398 ZCCHC6Q5VYS8 1495 aaKnown RBP25.68■■□□□ 1.7
CLIP2-201ENST00000223398 NEFMP07197 916 aa25.67■■□□□ 1.7
CLIP2-201ENST00000223398 ZBTB47Q9UFB7 747 aaPredicted RBP25.65■■□□□ 1.7
CLIP2-201ENST00000223398 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.65■■□□□ 1.72e-6■■■□□ 16.4
CLIP2-201ENST00000223398 CHIC2Q9UKJ5 165 aa25.63■■□□□ 1.69
CLIP2-201ENST00000223398 CANXP27824 592 aaKnown RBP25.62■■□□□ 1.69
CLIP2-201ENST00000223398 MYT1Q01538 1121 aa25.62■■□□□ 1.69
CLIP2-201ENST00000223398 SENP3Q9H4L4 574 aaPredicted RBP25.48■■□□□ 1.67
CLIP2-201ENST00000223398 KCNH8Q96L42 1107 aa25.45■■□□□ 1.66
CLIP2-201ENST00000223398 RB1CC1Q8TDY2 1594 aa25.43■■□□□ 1.66
CLIP2-201ENST00000223398 TONSLQ96HA7 1378 aa25.4■■□□□ 1.66
CLIP2-201ENST00000223398 TSPY4P0CV99 314 aa25.39■■□□□ 1.65
CLIP2-201ENST00000223398 TSPY10P0CW01 314 aa25.39■■□□□ 1.65
CLIP2-201ENST00000223398 RTL5Q5HYW3 569 aaPredicted RBP25.38■■□□□ 1.65
CLIP2-201ENST00000223398 CCDC180Q9P1Z9 1646 aa25.37■■□□□ 1.65
CLIP2-201ENST00000223398 KDM2AQ9Y2K7 1162 aa25.33■■□□□ 1.65
CLIP2-201ENST00000223398 SCAF1Q9H7N4 1312 aaKnown RBP25.33■■□□□ 1.65
CLIP2-201ENST00000223398 MTUS2Q5JR59 1369 aa25.33■■□□□ 1.64
CLIP2-201ENST00000223398 PLEKHG5O94827 1062 aa25.29■■□□□ 1.64
CLIP2-201ENST00000223398 GTF3C3Q9Y5Q9 886 aa25.23■■□□□ 1.63
CLIP2-201ENST00000223398 SALL2Q9Y467 1007 aaPredicted RBP25.23■■□□□ 1.63
CLIP2-201ENST00000223398 RRP7BPQ9NSQ0 103 aa25.17■■□□□ 1.62
CLIP2-201ENST00000223398 A0A0G2JS52 829 aa25.16■■□□□ 1.62
CLIP2-201ENST00000223398 ARID4BQ4LE39 1312 aaPredicted RBP25.16■■□□□ 1.62
CLIP2-201ENST00000223398 DDX10Q13206 875 aaKnown RBP25.16■■□□□ 1.62
CLIP2-201ENST00000223398 PLEKHD1A6NEE1 506 aa25.15■■□□□ 1.62
CLIP2-201ENST00000223398 ERCC6Q03468 1493 aa25.15■■□□□ 1.62
CLIP2-201ENST00000223398 FAM9BQ8IZU0 186 aa25.14■■□□□ 1.62
CLIP2-201ENST00000223398 BAZ1BQ9UIG0 1483 aaKnown RBP25.13■■□□□ 1.61
CLIP2-201ENST00000223398 ZBTB7CA1YPR0 619 aa25.13■■□□□ 1.61
CLIP2-201ENST00000223398 PPP1R15AO75807 674 aaPredicted RBP25.12■■□□□ 1.61
CLIP2-201ENST00000223398 CLIP1P30622 1438 aa25.1■■□□□ 1.61
CLIP2-201ENST00000223398 C14orf37Q86TY3 774 aa25.07■■□□□ 1.6
CLIP2-201ENST00000223398 RSF1Q96T23 1441 aaPredicted RBP25.03■■□□□ 1.6
CLIP2-201ENST00000223398 HIRIP3Q9BW71 556 aaPredicted RBP25.03■■□□□ 1.6
CLIP2-201ENST00000223398 HNRNPUQ00839 825 aaKnown RBP eCLIP25.02■■□□□ 1.6
CLIP2-201ENST00000223398 RGL3Q3MIN7 710 aa24.99■■□□□ 1.59
CLIP2-201ENST00000223398 NACADO15069 1562 aa24.99■■□□□ 1.59
CLIP2-201ENST00000223398 TMC1Q8TDI8 760 aa24.98■■□□□ 1.59
CLIP2-201ENST00000223398 NPM2Q86SE8 214 aaKnown RBP24.97■■□□□ 1.59
CLIP2-201ENST00000223398 WRNQ14191 1432 aaPredicted RBP eCLIP24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms