RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 DCAF8L2P0C7V8 631 aa33.43■■■□□ 2.94
SMPD3-201ENST00000219334 SUPT5HO00267 1087 aaKnown RBP31.21■■■□□ 2.59
SMPD3-201ENST00000219334 NISCHQ9Y2I1 1504 aa30.96■■■□□ 2.55
SMPD3-201ENST00000219334 SHROOM4Q9ULL8 1493 aa30.58■■■□□ 2.49
SMPD3-201ENST00000219334 EHMT2Q96KQ7 1210 aa30.33■■■□□ 2.45
SMPD3-201ENST00000219334 APLP2Q06481 763 aa30.08■■■□□ 2.41
SMPD3-201ENST00000219334 FAM9AQ8IZU1 332 aaPredicted RBP30.01■■■□□ 2.39
SMPD3-201ENST00000219334 PELP1Q8IZL8 1130 aaKnown RBP29.58■■■□□ 2.33
SMPD3-201ENST00000219334 TTBK1Q5TCY1 1321 aaPredicted RBP29.26■■■□□ 2.27
SMPD3-201ENST00000219334 RANGAP1P46060 587 aaPredicted RBP29.19■■■□□ 2.26
SMPD3-201ENST00000219334 ATP1B4Q9UN42 357 aaPredicted RBP29.11■■■□□ 2.25
SMPD3-201ENST00000219334 TRIM41Q8WV44 630 aa28.97■■■□□ 2.23
SMPD3-201ENST00000219334 PCGF6Q9BYE7 350 aa28.86■■■□□ 2.21
SMPD3-201ENST00000219334 UBTFP17480 764 aaKnown RBP28.79■■■□□ 2.2
SMPD3-201ENST00000219334 CCER1Q8TC90 406 aaPredicted RBP28.56■■■□□ 2.16
SMPD3-201ENST00000219334 ZEB1P37275 1124 aaPredicted RBP28.43■■■□□ 2.14
SMPD3-201ENST00000219334 CENPBP07199 599 aaPredicted RBP28.34■■■□□ 2.13
SMPD3-201ENST00000219334 MYT1LQ9UL68 1186 aa28.29■■■□□ 2.12
SMPD3-201ENST00000219334 ERICH6Q7L0X2 663 aa28.28■■■□□ 2.12
SMPD3-201ENST00000219334 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.2■■■□□ 2.11
SMPD3-201ENST00000219334 HNRNPUL2Q1KMD3 747 aaKnown RBP28.2■■■□□ 2.11
SMPD3-201ENST00000219334 NEFLP07196 543 aa28.04■■■□□ 2.08
SMPD3-201ENST00000219334 PPARGC1BQ86YN6 1023 aaKnown RBP27.93■■■□□ 2.06
SMPD3-201ENST00000219334 ITGAEP38570 1179 aa27.85■■■□□ 2.05
SMPD3-201ENST00000219334 YTHDC1Q96MU7 727 aaKnown RBP27.76■■■□□ 2.03
SMPD3-201ENST00000219334 POLR3GLQ9BT43 218 aa27.75■■■□□ 2.03
SMPD3-201ENST00000219334 CHIC1Q5VXU3 224 aa27.64■■■□□ 2.01
SMPD3-201ENST00000219334 TRIM26Q12899 539 aaPredicted RBP27.55■■■□□ 2
SMPD3-201ENST00000219334 SLC4A1APQ9BWU0 796 aaKnown RBP27.44■■□□□ 1.98
SMPD3-201ENST00000219334 PABPN1Q86U42 306 aaKnown RBP eCLIP27.4■■□□□ 1.98
SMPD3-201ENST00000219334 CNGB1Q14028 1251 aaPredicted RBP27.36■■□□□ 1.97
SMPD3-201ENST00000219334 DAXXQ9UER7 740 aaPredicted RBP27.34■■□□□ 1.97
SMPD3-201ENST00000219334 ABCC9O60706 1549 aa27.33■■□□□ 1.97
SMPD3-201ENST00000219334 LOC105371045A0A1W2PR82 267 aa27.28■■□□□ 1.96
SMPD3-201ENST00000219334 FAM50AQ14320 339 aaKnown RBP27.17■■□□□ 1.94
SMPD3-201ENST00000219334 FBLN2P98095 1184 aa27.13■■□□□ 1.93
SMPD3-201ENST00000219334 TRIM52Q96A61 297 aa27.1■■□□□ 1.93
SMPD3-201ENST00000219334 HRCP23327 699 aa27.03■■□□□ 1.92
SMPD3-201ENST00000219334 CLSPNQ9HAW4 1339 aa26.86■■□□□ 1.89
SMPD3-201ENST00000219334 NEUROD1Q13562 356 aa26.78■■□□□ 1.88
SMPD3-201ENST00000219334 ZNF326Q5BKZ1 582 aaKnown RBP26.77■■□□□ 1.88
SMPD3-201ENST00000219334 BCANQ96GW7 911 aa26.72■■□□□ 1.87
SMPD3-201ENST00000219334 ZNF316A6NFI3 1004 aaPredicted RBP26.63■■□□□ 1.85
SMPD3-201ENST00000219334 MYT1Q01538 1121 aa26.58■■□□□ 1.85
SMPD3-201ENST00000219334 ARID3CA6NKF2 412 aa26.58■■□□□ 1.84
SMPD3-201ENST00000219334 ZBTB47Q9UFB7 747 aaPredicted RBP26.57■■□□□ 1.84
SMPD3-201ENST00000219334 DIEXFQ68CQ4 756 aaKnown RBP26.55■■□□□ 1.84
SMPD3-201ENST00000219334 SLC24A1O60721 1099 aa26.55■■□□□ 1.84
SMPD3-201ENST00000219334 P3H3Q8IVL6 736 aa26.54■■□□□ 1.84
SMPD3-201ENST00000219334 ESF1Q9H501 851 aaKnown RBP26.53■■□□□ 1.84
SMPD3-201ENST00000219334 NEFMP07197 916 aa26.5■■□□□ 1.83
SMPD3-201ENST00000219334 CDK11AQ9UQ88 783 aaPredicted RBP26.49■■□□□ 1.83
SMPD3-201ENST00000219334 ZNF777Q9ULD5 760 aaPredicted RBP26.47■■□□□ 1.83
SMPD3-201ENST00000219334 ANP32CO43423 234 aa26.44■■□□□ 1.82
SMPD3-201ENST00000219334 RTL5Q5HYW3 569 aaPredicted RBP26.4■■□□□ 1.82
SMPD3-201ENST00000219334 NPM1P06748 294 aaKnown RBP eCLIP26.38■■□□□ 1.81
SMPD3-201ENST00000219334 CSRNP3Q8WYN3 585 aa26.35■■□□□ 1.81
SMPD3-201ENST00000219334 CANXP27824 592 aaKnown RBP26.31■■□□□ 1.8
SMPD3-201ENST00000219334 STAG3Q9UJ98 1225 aa26.28■■□□□ 1.8
SMPD3-201ENST00000219334 BCL11AQ9H165 835 aa26.22■■□□□ 1.79
SMPD3-201ENST00000219334 PLPPR3Q6T4P5 718 aa26.2■■□□□ 1.78
SMPD3-201ENST00000219334 CHGAP10645 457 aaKnown RBP26.2■■□□□ 1.78
SMPD3-201ENST00000219334 SCRIBQ14160 1630 aa26.06■■□□□ 1.76
SMPD3-201ENST00000219334 CHMP7Q8WUX9 453 aaPredicted RBP25.87■■□□□ 1.73
SMPD3-201ENST00000219334 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.87■■□□□ 1.73
SMPD3-201ENST00000219334 TONSLQ96HA7 1378 aa25.87■■□□□ 1.73
SMPD3-201ENST00000219334 TSPY4P0CV99 314 aa25.83■■□□□ 1.73
SMPD3-201ENST00000219334 TSPY10P0CW01 314 aa25.83■■□□□ 1.73
SMPD3-201ENST00000219334 CHIC2Q9UKJ5 165 aa25.77■■□□□ 1.72
SMPD3-201ENST00000219334 GTF3C3Q9Y5Q9 886 aa25.71■■□□□ 1.71
SMPD3-201ENST00000219334 SCAF1Q9H7N4 1312 aaKnown RBP25.69■■□□□ 1.7
SMPD3-201ENST00000219334 MTUS2Q5JR59 1369 aa25.63■■□□□ 1.69
SMPD3-201ENST00000219334 ANP32AP39687 249 aaKnown RBP25.6■■□□□ 1.69
SMPD3-201ENST00000219334 KDM2AQ9Y2K7 1162 aa25.57■■□□□ 1.68
SMPD3-201ENST00000219334 KCNH8Q96L42 1107 aa25.56■■□□□ 1.68
SMPD3-201ENST00000219334 A0A0G2JS52 829 aa25.55■■□□□ 1.68
SMPD3-201ENST00000219334 PPP1R15AO75807 674 aaPredicted RBP25.55■■□□□ 1.68
SMPD3-201ENST00000219334 HSP90AA1P07900 732 aaKnown RBP25.54■■□□□ 1.68
SMPD3-201ENST00000219334 FAM9BQ8IZU0 186 aa25.53■■□□□ 1.68
SMPD3-201ENST00000219334 NPM2Q86SE8 214 aaKnown RBP25.53■■□□□ 1.68
SMPD3-201ENST00000219334 TMC1Q8TDI8 760 aa25.52■■□□□ 1.68
SMPD3-201ENST00000219334 SALL2Q9Y467 1007 aaPredicted RBP25.51■■□□□ 1.67
SMPD3-201ENST00000219334 WDR43Q15061 677 aaKnown RBP eCLIP25.5■■□□□ 1.67
SMPD3-201ENST00000219334 UPF2Q9HAU5 1272 aaKnown RBP25.5■■□□□ 1.67
SMPD3-201ENST00000219334 HNRNPUQ00839 825 aaKnown RBP eCLIP25.5■■□□□ 1.67
SMPD3-201ENST00000219334 PLEKHD1A6NEE1 506 aa25.49■■□□□ 1.67
SMPD3-201ENST00000219334 C14orf37Q86TY3 774 aa25.49■■□□□ 1.67
SMPD3-201ENST00000219334 DDX10Q13206 875 aaKnown RBP25.48■■□□□ 1.67
SMPD3-201ENST00000219334 ZCCHC6Q5VYS8 1495 aaKnown RBP25.46■■□□□ 1.67
SMPD3-201ENST00000219334 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.43■■□□□ 1.66
SMPD3-201ENST00000219334 ARID4BQ4LE39 1312 aaPredicted RBP25.43■■□□□ 1.66
SMPD3-201ENST00000219334 ZBTB7CA1YPR0 619 aa25.42■■□□□ 1.66
SMPD3-201ENST00000219334 PLEKHG5O94827 1062 aa25.4■■□□□ 1.66
SMPD3-201ENST00000219334 ANP32BQ92688 251 aaKnown RBP25.37■■□□□ 1.65
SMPD3-201ENST00000219334 SENP3Q9H4L4 574 aaPredicted RBP25.37■■□□□ 1.65
SMPD3-201ENST00000219334 HAP1P54257 671 aaPredicted RBP25.33■■□□□ 1.65
SMPD3-201ENST00000219334 RRP7BPQ9NSQ0 103 aa25.32■■□□□ 1.64
SMPD3-201ENST00000219334 RB1CC1Q8TDY2 1594 aa25.32■■□□□ 1.64
SMPD3-201ENST00000219334 FKBP8Q14318 412 aa25.31■■□□□ 1.64
SMPD3-201ENST00000219334 RSF1Q96T23 1441 aaPredicted RBP25.29■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms