RNA–Protein interactions for RNA: ENST00000193403.10

ACTN1-201, Transcript of actinin alpha 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ACTN1, Length 3,779 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-201ENST00000193403 SF3B4Q15427 424 aaKnown RBP eCLIP11.02□□□□□ -0.651e-25■■■■■ 49.5
ACTN1-201ENST00000193403 DDX3XO00571 662 aaKnown RBP eCLIP12.06□□□□□ -0.484e-18■■□□□ 14.2
ACTN1-201ENST00000193403 SRSF7Q16629 238 aaKnown RBP eCLIP9.29□□□□□ -0.923e-14■■■■□ 24.7
ACTN1-201ENST00000193403 U2AF2P26368 475 aaKnown RBP eCLIP13.37□□□□□ -0.271e-13■■■□□ 15
ACTN1-201ENST00000193403 EWSR1Q01844 656 aaKnown RBP eCLIP9.8□□□□□ -0.841e-13■■■■■ 50.4
ACTN1-201ENST00000193403 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.35□□□□□ -0.432e-13■■■■■ 158.6
ACTN1-201ENST00000193403 UPF1Q92900 1129 aaKnown RBP eCLIP11.5□□□□□ -0.576e-12■■□□□ 13.4
ACTN1-201ENST00000193403 PPIGQ13427 754 aaKnown RBP eCLIP10.81□□□□□ -0.689e-12■□□□□ 11
ACTN1-201ENST00000193403 IGF2BP3O00425 579 aaKnown RBP eCLIP12.09□□□□□ -0.471e-11■■■■□ 20.1
ACTN1-201ENST00000193403 NCBP2P52298 156 aaKnown RBP eCLIP10.59□□□□□ -0.711e-10■■□□□ 13.5
ACTN1-201ENST00000193403 NOLC1Q14978 699 aaKnown RBP eCLIP13.46□□□□□ -0.258e-10■□□□□ 9.7
ACTN1-201ENST00000193403 TIA1P31483 386 aaKnown RBP eCLIP10.67□□□□□ -0.71e-9■■■■■ 27.3
ACTN1-201ENST00000193403 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.95□□□□□ -0.344e-9■■□□□ 14.3
ACTN1-201ENST00000193403 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.12□□□□□ -0.635e-9■■■■□ 21.7
ACTN1-201ENST00000193403 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.75□□□□□ -0.535e-8■■■■■ 204.6
ACTN1-201ENST00000193403 YBX3P16989 372 aaKnown RBP eCLIP11.31□□□□□ -0.69e-8■■■□□ 15.8
ACTN1-201ENST00000193403 G3BP1Q13283 466 aaKnown RBP eCLIP13.25□□□□□ -0.291e-7■■□□□ 12.9
ACTN1-201ENST00000193403 DKC1O60832 514 aaKnown RBP eCLIP11.62□□□□□ -0.551e-7■■■■■ 54.2
ACTN1-201ENST00000193403 PTBP1P26599 531 aaKnown RBP eCLIP10.35□□□□□ -0.751e-7■■■■■ 30.8
ACTN1-201ENST00000193403 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.96□□□□□ -0.172e-7■■■■□ 20.7
ACTN1-201ENST00000193403 HNRNPUQ00839 825 aaKnown RBP eCLIP15.71■□□□□ 0.113e-7■■□□□ 13
ACTN1-201ENST00000193403 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.97□□□□□ -0.493e-7■□□□□ 9.8
ACTN1-201ENST00000193403 SF3A3Q12874 501 aaKnown RBP eCLIP12.6□□□□□ -0.394e-7■■■■■ 34.5
ACTN1-201ENST00000193403 AQRO60306 1485 aaKnown RBP eCLIP15.08■□□□□ 04e-7■■■■■ 30.8
ACTN1-201ENST00000193403 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.75□□□□□ -0.535e-7■□□□□ 8.5
ACTN1-201ENST00000193403 SND1Q7KZF4 910 aaKnown RBP eCLIP12.62□□□□□ -0.395e-7■□□□□ 8.3
ACTN1-201ENST00000193403 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.94□□□□□ -0.025e-7■□□□□ 10.3
ACTN1-201ENST00000193403 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.17□□□□□ -0.465e-7■■■□□ 15.3
ACTN1-201ENST00000193403 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.41□□□□□ -0.95e-7■■■□□ 17.7
ACTN1-201ENST00000193403 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.88□□□□□ -0.516e-7■■■■■ 31.5
ACTN1-201ENST00000193403 EIF4G2P78344 907 aaKnown RBP eCLIP15.28■□□□□ 0.046e-7■■■■■ 48.9
ACTN1-201ENST00000193403 PABPC4Q13310 644 aaKnown RBP eCLIP12.21□□□□□ -0.456e-7■■□□□ 13.6
ACTN1-201ENST00000193403 RPS3P23396 243 aaKnown RBP eCLIP10.76□□□□□ -0.696e-7■■□□□ 13.4
ACTN1-201ENST00000193403 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.68□□□□□ -0.76e-7■■□□□ 11.8
ACTN1-201ENST00000193403 SFPQP23246 707 aaKnown RBP eCLIP13.1□□□□□ -0.317e-7■■■■□ 21
ACTN1-201ENST00000193403 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.95□□□□□ -0.57e-7■■■■□ 25.5
ACTN1-201ENST00000193403 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.4□□□□□ -0.437e-7■■■□□ 15.2
ACTN1-201ENST00000193403 PRPF4O43172 522 aaKnown RBP eCLIP11.67□□□□□ -0.548e-7■■■□□ 17.4
ACTN1-201ENST00000193403 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.01□□□□□ -0.491e-6■■■■■ 30.4
ACTN1-201ENST00000193403 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.15□□□□□ -0.621e-6■■■■■ 31.4
ACTN1-201ENST00000193403 HNRNPMP52272 730 aaKnown RBP eCLIP14.53□□□□□ -0.081e-6■■■■□ 24.2
ACTN1-201ENST00000193403 ZNF622Q969S3 477 aaKnown RBP eCLIP12.25□□□□□ -0.451e-6■□□□□ 10.2
ACTN1-201ENST00000193403 FXR2P51116 673 aaKnown RBP eCLIP12.05□□□□□ -0.481e-6■■■■□ 21.1
ACTN1-201ENST00000193403 NKRFO15226 690 aaKnown RBP eCLIP12.29□□□□□ -0.441e-6■■□□□ 13.9
ACTN1-201ENST00000193403 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.46□□□□□ -0.731e-6■■□□□ 14.2
ACTN1-201ENST00000193403 MATR3P43243 847 aaKnown RBP eCLIP12.76□□□□□ -0.372e-6■■■■□ 22.4
ACTN1-201ENST00000193403 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.02□□□□□ -0.482e-6■■■■■ 54.4
ACTN1-201ENST00000193403 PCBP2Q15366 365 aaKnown RBP eCLIP10.8□□□□□ -0.682e-6■■■□□ 17.9
ACTN1-201ENST00000193403 METAP2P50579 478 aaKnown RBP eCLIP12.85□□□□□ -0.352e-6■■■□□ 17.8
ACTN1-201ENST00000193403 RBFOX2O43251 390 aaKnown RBP eCLIP9.4□□□□□ -0.912e-6■■□□□ 13.9
ACTN1-201ENST00000193403 EFTUD2Q15029 972 aaKnown RBP eCLIP11.81□□□□□ -0.522e-6■■■■□ 20.8
ACTN1-201ENST00000193403 RBM22Q9NW64 420 aaKnown RBP eCLIP11.26□□□□□ -0.612e-6■■□□□ 12.7
ACTN1-201ENST00000193403 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.36□□□□□ -0.272e-6■■■□□ 15.7
ACTN1-201ENST00000193403 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.56□□□□□ -0.723e-6■□□□□ 10.9
ACTN1-201ENST00000193403 SF3B1O75533 1304 aaKnown RBP eCLIP11.43□□□□□ -0.583e-6■■■■■ 155
ACTN1-201ENST00000193403 TIAL1Q01085 375 aaKnown RBP eCLIP10.85□□□□□ -0.674e-6■■■□□ 18.3
ACTN1-201ENST00000193403 FMR1Q06787 632 aaKnown RBP eCLIP12.71□□□□□ -0.384e-6■■■□□ 17.6
ACTN1-201ENST00000193403 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.54□□□□□ -0.724e-6■■□□□ 13.3
ACTN1-201ENST00000193403 TRA2AQ13595 282 aaKnown RBP eCLIP9.36□□□□□ -0.915e-6■■■■□ 22.5
ACTN1-201ENST00000193403 PUM1Q14671 1186 aaKnown RBP eCLIP10.57□□□□□ -0.725e-6■■■□□ 17
ACTN1-201ENST00000193403 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.78□□□□□ -0.365e-6■■■■■ 34.6
ACTN1-201ENST00000193403 HNRNPLP14866 589 aaKnown RBP eCLIP11.42□□□□□ -0.586e-6■■□□□ 12.3
ACTN1-201ENST00000193403 RBM15Q96T37 977 aaKnown RBP eCLIP11.92□□□□□ -0.58e-6■■■■■ 30.1
Retrieved 63 of 63 RNA–protein pairs in 14.5 ms