RNA–Protein interactions for RNA: ENST00000193403.10

ACTN1-201, Transcript of actinin alpha 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ACTN1, Length 3,779 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-201ENST00000193403 KRTAP9-3Q9BYQ3 159 aa4.15□□□□□ -1.74
ACTN1-201ENST00000193403 SYNE1Q8NF91 8797 aaKnown RBP4.14□□□□□ -1.75
ACTN1-201ENST00000193403 LCE3CQ5T5A8 94 aa4.12□□□□□ -1.75
ACTN1-201ENST00000193403 LCE1DQ5T752 114 aa4.11□□□□□ -1.75
ACTN1-201ENST00000193403 DSTQ03001 7570 aaKnown RBP4.08□□□□□ -1.76
ACTN1-201ENST00000193403 KRTAP9-7A8MTY7 169 aa4.07□□□□□ -1.76
ACTN1-201ENST00000193403 KRTAP4-7Q9BYR0 210 aa4.05□□□□□ -1.76
ACTN1-201ENST00000193403 SSPOA2VEC9 5147 aa4.04□□□□□ -1.76
ACTN1-201ENST00000193403 FCGBPQ9Y6R7 5405 aaPredicted RBP4□□□□□ -1.77
ACTN1-201ENST00000193403 SYNE2Q8WXH0 6885 aaKnown RBP3.94□□□□□ -1.78
ACTN1-201ENST00000193403 KRTAP4-2Q9BYR5 136 aa3.92□□□□□ -1.78
ACTN1-201ENST00000193403 KRTAP9-6A8MVA2 160 aa3.92□□□□□ -1.78
ACTN1-201ENST00000193403 KRTAP4-9Q9BYQ8 210 aa3.92□□□□□ -1.78
ACTN1-201ENST00000193403 MUC12Q9UKN1 5478 aa3.89□□□□□ -1.79
ACTN1-201ENST00000193403 MACF1Q9UPN3 7388 aaKnown RBP3.88□□□□□ -1.79
ACTN1-201ENST00000193403 KRTAP4-11Q9BYQ6 195 aa3.86□□□□□ -1.79
ACTN1-201ENST00000193403 LCE5AQ5TCM9 118 aa3.81□□□□□ -1.8
ACTN1-201ENST00000193403 MT1GP13640 62 aa3.8□□□□□ -1.8
ACTN1-201ENST00000193403 SPRR2FQ96RM1 72 aa3.78□□□□□ -1.8
ACTN1-201ENST00000193403 KRTAP19-7Q3SYF9 63 aa3.77□□□□□ -1.81
ACTN1-201ENST00000193403 KRTAP4-3Q9BYR4 195 aa3.76□□□□□ -1.81
ACTN1-201ENST00000193403 MT1LQ93083 61 aa3.74□□□□□ -1.81
ACTN1-201ENST00000193403 KRTAP2-3P0C7H8 128 aa3.71□□□□□ -1.82
ACTN1-201ENST00000193403 KRTAP2-4Q9BYR9 128 aa3.71□□□□□ -1.82
ACTN1-201ENST00000193403 KRTAP2-1Q9BYU5 128 aa3.71□□□□□ -1.82
ACTN1-201ENST00000193403 MT1EP04732 61 aa3.7□□□□□ -1.82
ACTN1-201ENST00000193403 KRTAP12-4P60329 112 aa3.69□□□□□ -1.82
ACTN1-201ENST00000193403 KRTAP19-6Q3LI70 58 aa3.67□□□□□ -1.82
ACTN1-201ENST00000193403 KRTAP19-4Q3LI73 84 aa3.66□□□□□ -1.82
ACTN1-201ENST00000193403 MDN1Q9NU22 5596 aa3.64□□□□□ -1.83
ACTN1-201ENST00000193403 SPRR2EP22531 72 aa3.51□□□□□ -1.85
ACTN1-201ENST00000193403 SPRR2BP35325 72 aa3.51□□□□□ -1.85
ACTN1-201ENST00000193403 SPRR2AP35326 72 aa3.51□□□□□ -1.85
ACTN1-201ENST00000193403 KRTAP5-3Q6L8H2 238 aa3.5□□□□□ -1.85
ACTN1-201ENST00000193403 MT1MQ8N339 61 aa3.48□□□□□ -1.85
ACTN1-201ENST00000193403 KRTAP19-3Q7Z4W3 81 aa3.46□□□□□ -1.86
ACTN1-201ENST00000193403 SPRR2DP22532 72 aa3.34□□□□□ -1.87
ACTN1-201ENST00000193403 LCE3DQ9BYE3 92 aa3.34□□□□□ -1.88
ACTN1-201ENST00000193403 PRM1P04553 51 aa3.3□□□□□ -1.88
ACTN1-201ENST00000193403 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
ACTN1-201ENST00000193403 LCE1AQ5T7P2 110 aa3.27□□□□□ -1.89
ACTN1-201ENST00000193403 KRTAP6-1Q3LI64 71 aa3.24□□□□□ -1.89
ACTN1-201ENST00000193403 KRTAP6-3Q3LI67 103 aa3.16□□□□□ -1.9
ACTN1-201ENST00000193403 MT4P47944 62 aa3.14□□□□□ -1.91
ACTN1-201ENST00000193403 MT1AP04731 61 aa3.11□□□□□ -1.91
ACTN1-201ENST00000193403 KRTAP5-9P26371 169 aa3.09□□□□□ -1.91
ACTN1-201ENST00000193403 NEBP20929 6669 aa3.07□□□□□ -1.92
ACTN1-201ENST00000193403 KRTAP6-2Q3LI66 62 aa3.06□□□□□ -1.92
ACTN1-201ENST00000193403 KRTAP5-5Q701N2 237 aaPredicted RBP3.01□□□□□ -1.93
ACTN1-201ENST00000193403 MT3P25713 68 aa2.94□□□□□ -1.94
ACTN1-201ENST00000193403 MUC19Q7Z5P9 8384 aa2.94□□□□□ -1.94
ACTN1-201ENST00000193403 KRTAP20-1Q3LI63 56 aa2.92□□□□□ -1.94
ACTN1-201ENST00000193403 LCE1BQ5T7P3 118 aa2.85□□□□□ -1.95
ACTN1-201ENST00000193403 KRTAP2-2Q9BYT5 123 aa2.82□□□□□ -1.96
ACTN1-201ENST00000193403 HMCN1Q96RW7 5635 aa2.78□□□□□ -1.96
ACTN1-201ENST00000193403 LCE1EQ5T753 118 aa2.67□□□□□ -1.98
ACTN1-201ENST00000193403 KRTAP5-11Q6L8G4 156 aa2.67□□□□□ -1.98
ACTN1-201ENST00000193403 KRTAP20-2Q3LI61 65 aa2.61□□□□□ -1.99
ACTN1-201ENST00000193403 MUC5ACP98088 5654 aa2.57□□□□□ -2
ACTN1-201ENST00000193403 MUC5BQ9HC84 5762 aaPredicted RBP2.54□□□□□ -2
ACTN1-201ENST00000193403 KRTAP5-4Q6L8H1 288 aa2.51□□□□□ -2.01
ACTN1-201ENST00000193403 GPR98Q8WXG9 6306 aa2.48□□□□□ -2.01
ACTN1-201ENST00000193403 LCE1FQ5T754 118 aa2.43□□□□□ -2.02
ACTN1-201ENST00000193403 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.43□□□□□ -2.02
ACTN1-201ENST00000193403 AHNAK2Q8IVF2 5795 aa2.39□□□□□ -2.03
ACTN1-201ENST00000193403 KRTAP5-1Q6L8H4 278 aa2.38□□□□□ -2.03
ACTN1-201ENST00000193403 KRTAP5-7Q6L8G8 165 aa2.35□□□□□ -2.03
ACTN1-201ENST00000193403 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
ACTN1-201ENST00000193403 KRTAP5-2Q701N4 177 aa2.24□□□□□ -2.05
ACTN1-201ENST00000193403 KRTAP5-10Q6L8G5 202 aa2.2□□□□□ -2.06
ACTN1-201ENST00000193403 KRTAP5-8O75690 187 aa2.17□□□□□ -2.06
ACTN1-201ENST00000193403 LCE1CQ5T751 118 aa2.13□□□□□ -2.07
ACTN1-201ENST00000193403 AHNAKQ09666 5890 aaKnown RBP2.11□□□□□ -2.07
ACTN1-201ENST00000193403 KRTAP21-2Q3LI59 83 aa1.93□□□□□ -2.1
ACTN1-201ENST00000193403 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
ACTN1-201ENST00000193403 PHGR1C9JFL3 82 aa1.49□□□□□ -2.17
ACTN1-201ENST00000193403 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 15.7 ms