RNA–Protein interactions for RNA: ENST00000172229.7

NGFR-201, Transcript of nerve growth factor receptor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NGFR, Length 3,417 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NGFR-201ENST00000172229 NISCHQ9Y2I1 1504 aa33.11■■■□□ 2.89
NGFR-201ENST00000172229 SHROOM4Q9ULL8 1493 aa29.76■■■□□ 2.35
NGFR-201ENST00000172229 DCAF8L2P0C7V8 631 aa29.52■■■□□ 2.32
NGFR-201ENST00000172229 SUPT5HO00267 1087 aaKnown RBP29.27■■■□□ 2.28
NGFR-201ENST00000172229 ZCCHC6Q5VYS8 1495 aaKnown RBP27.83■■■□□ 2.05
NGFR-201ENST00000172229 CHIC1Q5VXU3 224 aa27.68■■■□□ 2.02
NGFR-201ENST00000172229 EHMT2Q96KQ7 1210 aa27.62■■■□□ 2.01
NGFR-201ENST00000172229 CCDC180Q9P1Z9 1646 aa27.47■■□□□ 1.99
NGFR-201ENST00000172229 LOC105371045A0A1W2PR82 267 aa27.41■■□□□ 1.98
NGFR-201ENST00000172229 PCGF6Q9BYE7 350 aa27.41■■□□□ 1.98
NGFR-201ENST00000172229 MYO15BQ96JP2 1530 aa27.32■■□□□ 1.96
NGFR-201ENST00000172229 FAM9AQ8IZU1 332 aaPredicted RBP27.31■■□□□ 1.96
NGFR-201ENST00000172229 ABCC9O60706 1549 aa27.02■■□□□ 1.92
NGFR-201ENST00000172229 TRIM41Q8WV44 630 aa26.88■■□□□ 1.89
NGFR-201ENST00000172229 PPARGC1BQ86YN6 1023 aaKnown RBP26.87■■□□□ 1.89
NGFR-201ENST00000172229 SCRIBQ14160 1630 aa26.84■■□□□ 1.89
NGFR-201ENST00000172229 HRCP23327 699 aa26.74■■□□□ 1.87
NGFR-201ENST00000172229 TTBK1Q5TCY1 1321 aaPredicted RBP26.59■■□□□ 1.85
NGFR-201ENST00000172229 DCAF1Q9Y4B6 1507 aa26.49■■□□□ 1.83
NGFR-201ENST00000172229 RSF1Q96T23 1441 aaPredicted RBP26.47■■□□□ 1.83
NGFR-201ENST00000172229 PABPN1Q86U42 306 aaKnown RBP eCLIP26.32■■□□□ 1.8
NGFR-201ENST00000172229 CECR2Q9BXF3 1484 aa26.31■■□□□ 1.8
NGFR-201ENST00000172229 TRIM26Q12899 539 aaPredicted RBP26.3■■□□□ 1.8
NGFR-201ENST00000172229 RB1CC1Q8TDY2 1594 aa26.16■■□□□ 1.78
NGFR-201ENST00000172229 RANGAP1P46060 587 aaPredicted RBP26.07■■□□□ 1.76
NGFR-201ENST00000172229 MROH2BQ7Z745 1585 aa26■■□□□ 1.75
NGFR-201ENST00000172229 UBTFP17480 764 aaKnown RBP25.87■■□□□ 1.73
NGFR-201ENST00000172229 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.84■■□□□ 1.73
NGFR-201ENST00000172229 WIZO95785 1651 aa25.81■■□□□ 1.72
NGFR-201ENST00000172229 NACADO15069 1562 aa25.8■■□□□ 1.72
NGFR-201ENST00000172229 CCER1Q8TC90 406 aaPredicted RBP25.73■■□□□ 1.71
NGFR-201ENST00000172229 ABCC8Q09428 1581 aa25.54■■□□□ 1.68
NGFR-201ENST00000172229 ZEB1P37275 1124 aaPredicted RBP25.51■■□□□ 1.68
NGFR-201ENST00000172229 CCDC88BA6NC98 1476 aa25.42■■□□□ 1.66
NGFR-201ENST00000172229 SOGA1O94964 1423 aa25.41■■□□□ 1.66
NGFR-201ENST00000172229 HNRNPUL2Q1KMD3 747 aaKnown RBP25.4■■□□□ 1.66
NGFR-201ENST00000172229 BAZ1AQ9NRL2 1556 aaPredicted RBP25.4■■□□□ 1.66
NGFR-201ENST00000172229 CSRNP3Q8WYN3 585 aa25.39■■□□□ 1.66
NGFR-201ENST00000172229 RUSC2Q8N2Y8 1516 aa25.27■■□□□ 1.64
NGFR-201ENST00000172229 APLP2Q06481 763 aa25.26■■□□□ 1.63
NGFR-201ENST00000172229 CEP162Q5TB80 1403 aa25.15■■□□□ 1.62
NGFR-201ENST00000172229 SMARCA4P51532 1647 aa25.14■■□□□ 1.61
NGFR-201ENST00000172229 TOP2AP11388 1531 aaKnown RBP25.1■■□□□ 1.61
NGFR-201ENST00000172229 YTHDC1Q96MU7 727 aaKnown RBP25.05■■□□□ 1.6
NGFR-201ENST00000172229 SMARCA2P51531 1590 aa25.03■■□□□ 1.6
NGFR-201ENST00000172229 ITGAEP38570 1179 aa25.03■■□□□ 1.6
NGFR-201ENST00000172229 WRNQ14191 1432 aaPredicted RBP eCLIP25.02■■□□□ 1.6
NGFR-201ENST00000172229 ATP1B4Q9UN42 357 aaPredicted RBP24.96■■□□□ 1.59
NGFR-201ENST00000172229 DIEXFQ68CQ4 756 aaKnown RBP24.96■■□□□ 1.59
NGFR-201ENST00000172229 TNIKQ9UKE5 1360 aa24.88■■□□□ 1.57
NGFR-201ENST00000172229 BAZ1BQ9UIG0 1483 aaKnown RBP24.88■■□□□ 1.57
NGFR-201ENST00000172229 UNC13AQ9UPW8 1703 aa24.86■■□□□ 1.57
NGFR-201ENST00000172229 SCAF1Q9H7N4 1312 aaKnown RBP24.81■■□□□ 1.56
NGFR-201ENST00000172229 CLIP1P30622 1438 aa24.78■■□□□ 1.56
NGFR-201ENST00000172229 GOLGA3Q08378 1498 aa24.78■■□□□ 1.56
NGFR-201ENST00000172229 BICRAQ9NZM4 1560 aa24.77■■□□□ 1.56
NGFR-201ENST00000172229 ATAD2BQ9ULI0 1458 aa24.76■■□□□ 1.55
NGFR-201ENST00000172229 PELP1Q8IZL8 1130 aaKnown RBP24.75■■□□□ 1.55
NGFR-201ENST00000172229 P3H3Q8IVL6 736 aa24.74■■□□□ 1.55
NGFR-201ENST00000172229 EIF4G1Q04637 1599 aaKnown RBP24.71■■□□□ 1.55
NGFR-201ENST00000172229 NEUROD1Q13562 356 aa24.69■■□□□ 1.54
NGFR-201ENST00000172229 RAPGEF2Q9Y4G8 1499 aa24.65■■□□□ 1.54
NGFR-201ENST00000172229 EEA1Q15075 1411 aa24.63■■□□□ 1.53
NGFR-201ENST00000172229 SYNJ1O43426 1573 aa24.62■■□□□ 1.53
NGFR-201ENST00000172229 ZNF316A6NFI3 1004 aaPredicted RBP24.59■■□□□ 1.53
NGFR-201ENST00000172229 CEP164Q9UPV0 1460 aa24.59■■□□□ 1.53
NGFR-201ENST00000172229 KANK4Q5T7N3 995 aaPredicted RBP24.56■■□□□ 1.52
NGFR-201ENST00000172229 GTF3C3Q9Y5Q9 886 aa24.56■■□□□ 1.52
NGFR-201ENST00000172229 CENPBP07199 599 aaPredicted RBP24.55■■□□□ 1.52
NGFR-201ENST00000172229 ACIN1Q9UKV3 1341 aaKnown RBP24.51■■□□□ 1.51
NGFR-201ENST00000172229 MIER1Q8N108 512 aa24.45■■□□□ 1.5
NGFR-201ENST00000172229 FAM50AQ14320 339 aaKnown RBP24.43■■□□□ 1.5
NGFR-201ENST00000172229 VPS8Q8N3P4 1428 aa24.39■■□□□ 1.5
NGFR-201ENST00000172229 ARID3CA6NKF2 412 aa24.29■■□□□ 1.48
NGFR-201ENST00000172229 KIF27Q86VH2 1401 aa24.25■■□□□ 1.47
NGFR-201ENST00000172229 CUX2O14529 1486 aa24.21■■□□□ 1.47
NGFR-201ENST00000172229 KIF21BO75037 1637 aa24.2■■□□□ 1.46
NGFR-201ENST00000172229 HIRIP3Q9BW71 556 aaPredicted RBP24.19■■□□□ 1.46
NGFR-201ENST00000172229 PEG3Q9GZU2 1588 aa24.15■■□□□ 1.46
NGFR-201ENST00000172229 CUX1P39880 1505 aa24.11■■□□□ 1.45
NGFR-201ENST00000172229 ARAP1Q96P48 1450 aa24.1■■□□□ 1.45
NGFR-201ENST00000172229 DNAJC5BQ9UF47 199 aa24.07■■□□□ 1.44
NGFR-201ENST00000172229 NCAPD3P42695 1498 aa24.07■■□□□ 1.44
NGFR-201ENST00000172229 SIN3AQ96ST3 1273 aa24.06■■□□□ 1.44
NGFR-201ENST00000172229 CARMIL1Q5VZK9 1371 aa24.06■■□□□ 1.44
NGFR-201ENST00000172229 TOP2BQ02880 1626 aa24.05■■□□□ 1.44
NGFR-201ENST00000172229 IGF1RP08069 1367 aa23.99■■□□□ 1.43
NGFR-201ENST00000172229 CADPSQ9ULU8 1353 aa23.99■■□□□ 1.43
NGFR-201ENST00000172229 PRXQ9BXM0 1461 aa23.99■■□□□ 1.43
NGFR-201ENST00000172229 CCNB3Q8WWL7 1395 aa23.97■■□□□ 1.43
NGFR-201ENST00000172229 DHX57Q6P158 1386 aaKnown RBP23.96■■□□□ 1.43
NGFR-201ENST00000172229 CFTRP13569 1480 aa23.94■■□□□ 1.42
NGFR-201ENST00000172229 MYT1Q01538 1121 aa23.93■■□□□ 1.42
NGFR-201ENST00000172229 RAD54L2Q9Y4B4 1467 aa23.92■■□□□ 1.42
NGFR-201ENST00000172229 DDX10Q13206 875 aaKnown RBP23.91■■□□□ 1.42
NGFR-201ENST00000172229 TDRD9Q8NDG6 1382 aaKnown RBP23.9■■□□□ 1.42
NGFR-201ENST00000172229 CHIC2Q9UKJ5 165 aa23.9■■□□□ 1.42
NGFR-201ENST00000172229 ARHGAP35Q9NRY4 1499 aa23.9■■□□□ 1.42
NGFR-201ENST00000172229 FGD5Q6ZNL6 1462 aa23.89■■□□□ 1.42
NGFR-201ENST00000172229 NESP48681 1621 aa23.89■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms