RNA–Protein interactions for RNA: ENSMUST00000173009.7

Lig3-209, Transcript of DNA ligase 3, mousemouse

TSL 1 (best) BASIC

Gene Lig3, Length 1,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3-209ENSMUST00000173009 Gm35339A0A140LHH9 1649 aa43.42■■■■■ 4.54
Lig3-209ENSMUST00000173009 NischQ80TM9 1593 aa43.26■■■■■ 4.52
Lig3-209ENSMUST00000173009 Abcc9P70170 1546 aa41.88■■■■■ 4.29
Lig3-209ENSMUST00000173009 Abcc8B2RUS7 1588 aa41.64■■■■■ 4.26
Lig3-209ENSMUST00000173009 ScribQ80U72 1612 aa39.76■■■■□ 3.96
Lig3-209ENSMUST00000173009 NacadQ5SWP3 1504 aa38.62■■■■□ 3.77
Lig3-209ENSMUST00000173009 Kdm5dQ62240 1548 aa38.62■■■■□ 3.77
Lig3-209ENSMUST00000173009 Dcaf1Q80TR8 1506 aa38.44■■■■□ 3.74
Lig3-209ENSMUST00000173009 Rhox8Q6VSS7 320 aa38.19■■■■□ 3.7
Lig3-209ENSMUST00000173009 Sycp2Q9CUU3 1500 aa37.84■■■■□ 3.65
Lig3-209ENSMUST00000173009 Rb1cc1Q9ESK9 1588 aa37.74■■■■□ 3.63
Lig3-209ENSMUST00000173009 Baz1aO88379 1555 aa37.24■■■■□ 3.55
Lig3-209ENSMUST00000173009 BicraF8VPZ9 1578 aa37.22■■■■□ 3.55
Lig3-209ENSMUST00000173009 Ccdc180J3QNE4 1664 aa37.17■■■■□ 3.54
Lig3-209ENSMUST00000173009 Crybg2B7ZCC2 1516 aa36.99■■■■□ 3.51
Lig3-209ENSMUST00000173009 Zcchc6Q5BLK4 1491 aaKnown RBP36.7■■■■□ 3.46
Lig3-209ENSMUST00000173009 Smarca2Q6DIC0 1577 aa36.2■■■■□ 3.39
Lig3-209ENSMUST00000173009 Pds5bQ4VA53 1446 aaKnown RBP36.07■■■■□ 3.36
Lig3-209ENSMUST00000173009 Rtl1Q7M732 1744 aa36.07■■■■□ 3.36
Lig3-209ENSMUST00000173009 Cecr2E9Q2Z1 1453 aa35.96■■■■□ 3.35
Lig3-209ENSMUST00000173009 Atad2bE9Q166 1460 aaKnown RBP35.85■■■■□ 3.33
Lig3-209ENSMUST00000173009 Smarca4Q3TKT4 1613 aaKnown RBP35.76■■■■□ 3.32
Lig3-209ENSMUST00000173009 Ccdc136Q3TVA9 1136 aa35.68■■■■□ 3.3
Lig3-209ENSMUST00000173009 Iqgap2Q3UQ44 1575 aa35.49■■■■□ 3.27
Lig3-209ENSMUST00000173009 Dnajc5bQ9CQ94 199 aa35.49■■■■□ 3.27
Lig3-209ENSMUST00000173009 Thoc2B1AZI6 1594 aaKnown RBP35.45■■■■□ 3.27
Lig3-209ENSMUST00000173009 Ercc6F8VPZ5 1481 aa35.31■■■■□ 3.24
Lig3-209ENSMUST00000173009 Brd4Q9ESU6 1400 aaKnown RBP35.28■■■■□ 3.24
Lig3-209ENSMUST00000173009 CftrP26361 1476 aa35.21■■■■□ 3.23
Lig3-209ENSMUST00000173009 Synj1Q8CHC4 1574 aa35.19■■■■□ 3.22
Lig3-209ENSMUST00000173009 Frmpd1A2AKB4 1549 aa35.09■■■■□ 3.21
Lig3-209ENSMUST00000173009 Wdr62Q3U3T8 1523 aa35.08■■■■□ 3.21
Lig3-209ENSMUST00000173009 Trim41Q5NCC3 630 aa35.08■■■■□ 3.21
Lig3-209ENSMUST00000173009 Cttnbp2B9EJA2 1648 aa35.06■■■■□ 3.2
Lig3-209ENSMUST00000173009 Cc2d2aQ8CFW7 1633 aa34.99■■■■□ 3.19
Lig3-209ENSMUST00000173009 Fam135aQ6NS59 1506 aa34.78■■■■□ 3.16
Lig3-209ENSMUST00000173009 Esf1Q3V1V3 845 aaKnown RBP34.78■■■■□ 3.16
Lig3-209ENSMUST00000173009 Phldb1Q6PDH0 1371 aaKnown RBP34.78■■■■□ 3.16
Lig3-209ENSMUST00000173009 Unc13aQ4KUS2 1712 aa34.55■■■■□ 3.12
Lig3-209ENSMUST00000173009 Ubl4bQ9CQ84 188 aa34.54■■■■□ 3.12
Lig3-209ENSMUST00000173009 Baz1bQ9Z277 1479 aa34.3■■■■□ 3.08
Lig3-209ENSMUST00000173009 Golga3P55937 1487 aa34.28■■■■□ 3.08
Lig3-209ENSMUST00000173009 Cngb1E1AZ71 1325 aa34.28■■■■□ 3.08
Lig3-209ENSMUST00000173009 Rsf1E9PWW9 1441 aaKnown RBP34.17■■■■□ 3.06
Lig3-209ENSMUST00000173009 Kif15Q6P9L6 1387 aa34.1■■■■□ 3.05
Lig3-209ENSMUST00000173009 Top2bQ64511 1612 aa34.08■■■■□ 3.05
Lig3-209ENSMUST00000173009 Mrc2Q64449 1479 aa34.03■■■■□ 3.04
Lig3-209ENSMUST00000173009 Lamc3Q9R0B6 1581 aa33.99■■■■□ 3.03
Lig3-209ENSMUST00000173009 Cux2P70298 1426 aa33.93■■■■□ 3.02
Lig3-209ENSMUST00000173009 TnnQ80Z71 1560 aa33.76■■■□□ 2.99
Lig3-209ENSMUST00000173009 Fmn1Q05860 1466 aa33.73■■■□□ 2.99
Lig3-209ENSMUST00000173009 Npm1Q61937 292 aaKnown RBP33.7■■■□□ 2.98
Lig3-209ENSMUST00000173009 Il27Q8K3I6 234 aa33.61■■■□□ 2.97
Lig3-209ENSMUST00000173009 Ccdc88bQ4QRL3 1481 aa33.57■■■□□ 2.96
Lig3-209ENSMUST00000173009 Cep164Q5DU05 1446 aa33.52■■■□□ 2.96
Lig3-209ENSMUST00000173009 Ccdc18Q640L5 1455 aa33.52■■■□□ 2.96
Lig3-209ENSMUST00000173009 Chic1Q8CBW7 227 aa33.51■■■□□ 2.95
Lig3-209ENSMUST00000173009 Camsap1A2AHC3 1581 aa33.45■■■□□ 2.95
Lig3-209ENSMUST00000173009 Kif21aQ9QXL2 1672 aa33.44■■■□□ 2.94
Lig3-209ENSMUST00000173009 HrcG5E8J6 738 aa33.39■■■□□ 2.94
Lig3-209ENSMUST00000173009 LrpprcQ6PB66 1392 aaKnown RBP33.3■■■□□ 2.92
Lig3-209ENSMUST00000173009 Dhx29Q6PGC1 1365 aaKnown RBP33.26■■■□□ 2.91
Lig3-209ENSMUST00000173009 Lrriq1Q0P5X1 1673 aa33.22■■■□□ 2.91
Lig3-209ENSMUST00000173009 Top2aQ01320 1528 aaKnown RBP33.19■■■□□ 2.9
Lig3-209ENSMUST00000173009 PogzQ8BZH4 1409 aaKnown RBP33.12■■■□□ 2.89
Lig3-209ENSMUST00000173009 Grin2bQ01097 1482 aa33.09■■■□□ 2.89
Lig3-209ENSMUST00000173009 Plb1Q3TTY0 1478 aa33.03■■■□□ 2.88
Lig3-209ENSMUST00000173009 Crocc2F6XLV1 1638 aa33.02■■■□□ 2.88
Lig3-209ENSMUST00000173009 Urb2E9Q7L1 1524 aaKnown RBP33.01■■■□□ 2.87
Lig3-209ENSMUST00000173009 Duox2A2AQ99 1517 aa33■■■□□ 2.87
Lig3-209ENSMUST00000173009 NrkQ9R0G8 1455 aa32.88■■■□□ 2.85
Lig3-209ENSMUST00000173009 Efcab5A0JP43 1406 aa32.87■■■□□ 2.85
Lig3-209ENSMUST00000173009 Gab3Q8BSM5 595 aa32.83■■■□□ 2.85
Lig3-209ENSMUST00000173009 PtprkP35822 1457 aa32.82■■■□□ 2.84
Lig3-209ENSMUST00000173009 Shroom4Q1W617 1475 aa32.76■■■□□ 2.83
Lig3-209ENSMUST00000173009 Eif4g3Q80XI3 1579 aaKnown RBP32.72■■■□□ 2.83
Lig3-209ENSMUST00000173009 Ift140E9PY46 1464 aa32.71■■■□□ 2.83
Lig3-209ENSMUST00000173009 Samd9lQ69Z37 1561 aa32.69■■■□□ 2.82
Lig3-209ENSMUST00000173009 Npm2Q80W85 207 aa32.65■■■□□ 2.82
Lig3-209ENSMUST00000173009 Disp1Q3TDN0 1521 aa32.62■■■□□ 2.81
Lig3-209ENSMUST00000173009 Rad54l2Q99NG0 1466 aa32.57■■■□□ 2.8
Lig3-209ENSMUST00000173009 Zeb1Q64318 1117 aa32.53■■■□□ 2.8
Lig3-209ENSMUST00000173009 Rapgef2Q8CHG7 1496 aa32.49■■■□□ 2.79
Lig3-209ENSMUST00000173009 Rusc2Q80U22 1514 aa32.42■■■□□ 2.78
Lig3-209ENSMUST00000173009 Nup160Q9Z0W3 1402 aaKnown RBP32.42■■■□□ 2.78
Lig3-209ENSMUST00000173009 Magi3Q9EQJ9 1476 aa32.38■■■□□ 2.77
Lig3-209ENSMUST00000173009 SynmQ70IV5 1561 aa32.38■■■□□ 2.77
Lig3-209ENSMUST00000173009 Mroh2bQ7M6Y6 1581 aa32.37■■■□□ 2.77
Lig3-209ENSMUST00000173009 Grin2aP35436 1464 aa32.36■■■□□ 2.77
Lig3-209ENSMUST00000173009 Pbrm1Q8BSQ9 1634 aaKnown RBP32.36■■■□□ 2.77
Lig3-209ENSMUST00000173009 Setd1bQ8CFT2 1985 aa32.35■■■□□ 2.77
Lig3-209ENSMUST00000173009 Cc2d2bA0A286YDU8 1405 aa32.34■■■□□ 2.77
Lig3-209ENSMUST00000173009 Cep162Q6ZQ06 1403 aa32.3■■■□□ 2.76
Lig3-209ENSMUST00000173009 Arhgap35Q91YM2 1499 aa32.29■■■□□ 2.76
Lig3-209ENSMUST00000173009 Pla2r1Q62028 1487 aa32.27■■■□□ 2.76
Lig3-209ENSMUST00000173009 Myt1lP97500 1187 aa32.19■■■□□ 2.74
Lig3-209ENSMUST00000173009 Eif4g1Q6NZJ6 1600 aaKnown RBP32.17■■■□□ 2.74
Lig3-209ENSMUST00000173009 Map3k1P53349 1493 aa32.16■■■□□ 2.74
Lig3-209ENSMUST00000173009 AqrQ8CFQ3 1481 aaKnown RBP32.14■■■□□ 2.74
Lig3-209ENSMUST00000173009 Carmil1Q6EDY6 1374 aa32.11■■■□□ 2.73
Retrieved 100 of 22,080 RNA–protein pairs in 41.1 ms