RNA–Protein interactions for RNA: ENSMUST00000170033.1

Lig4-202, Transcript of DNA ligase 4, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Lig4, Length 3,105 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4-202ENSMUST00000170033 Gm35339A0A140LHH9 1649 aa12.25□□□□□ -0.45
Lig4-202ENSMUST00000170033 NischQ80TM9 1593 aa12.14□□□□□ -0.47
Lig4-202ENSMUST00000170033 Abcc9P70170 1546 aa11.89□□□□□ -0.51
Lig4-202ENSMUST00000170033 Abcc8B2RUS7 1588 aa11.57□□□□□ -0.56
Lig4-202ENSMUST00000170033 Rtl1Q7M732 1744 aa11.53□□□□□ -0.56
Lig4-202ENSMUST00000170033 Ccdc180J3QNE4 1664 aa11.13□□□□□ -0.63
Lig4-202ENSMUST00000170033 Dcaf1Q80TR8 1506 aa11.07□□□□□ -0.64
Lig4-202ENSMUST00000170033 Rhox8Q6VSS7 320 aa10.81□□□□□ -0.68
Lig4-202ENSMUST00000170033 DiexfQ8BTT6 772 aaKnown RBP10.8□□□□□ -0.68
Lig4-202ENSMUST00000170033 Plppr3Q7TPB0 716 aa10.78□□□□□ -0.68
Lig4-202ENSMUST00000170033 Zcchc6Q5BLK4 1491 aaKnown RBP10.74□□□□□ -0.69
Lig4-202ENSMUST00000170033 ScribQ80U72 1612 aa10.72□□□□□ -0.69
Lig4-202ENSMUST00000170033 Ttbk1Q6PCN3 1308 aa10.72□□□□□ -0.69
Lig4-202ENSMUST00000170033 Rb1cc1Q9ESK9 1588 aa10.64□□□□□ -0.71
Lig4-202ENSMUST00000170033 Ube2uB1AUC4 352 aa10.62□□□□□ -0.71
Lig4-202ENSMUST00000170033 Crybg2B7ZCC2 1516 aa10.61□□□□□ -0.71
Lig4-202ENSMUST00000170033 Baz1aO88379 1555 aa10.61□□□□□ -0.71
Lig4-202ENSMUST00000170033 NacadQ5SWP3 1504 aa10.53□□□□□ -0.72
Lig4-202ENSMUST00000170033 Kdm5dQ62240 1548 aa10.51□□□□□ -0.73
Lig4-202ENSMUST00000170033 Rpgrip1Q9EPQ2 1331 aa10.47□□□□□ -0.73
Lig4-202ENSMUST00000170033 HrcG5E8J6 738 aa10.44□□□□□ -0.74
Lig4-202ENSMUST00000170033 Smarca2Q6DIC0 1577 aa10.37□□□□□ -0.75
Lig4-202ENSMUST00000170033 Ehmt2Q9Z148 1263 aaKnown RBP10.3□□□□□ -0.76
Lig4-202ENSMUST00000170033 Sycp2Q9CUU3 1500 aa10.27□□□□□ -0.77
Lig4-202ENSMUST00000170033 Pcgf6Q99NA9 353 aa10.27□□□□□ -0.77
Lig4-202ENSMUST00000170033 Amer1Q7TS75 1132 aa10.19□□□□□ -0.78
Lig4-202ENSMUST00000170033 Trim41Q5NCC3 630 aa10.12□□□□□ -0.79
Lig4-202ENSMUST00000170033 Cep164Q5DU05 1446 aa10.1□□□□□ -0.79
Lig4-202ENSMUST00000170033 Brd4Q9ESU6 1400 aaKnown RBP10.08□□□□□ -0.8
Lig4-202ENSMUST00000170033 ArxO35085 564 aa10.07□□□□□ -0.8
Lig4-202ENSMUST00000170033 Acin1Q9JIX8 1338 aaKnown RBP10.05□□□□□ -0.8
Lig4-202ENSMUST00000170033 Bcl11aQ9QYE3 773 aa10.03□□□□□ -0.8
Lig4-202ENSMUST00000170033 BicraF8VPZ9 1578 aa9.97□□□□□ -0.81
Lig4-202ENSMUST00000170033 PrkcshO08795 521 aa9.96□□□□□ -0.82
Lig4-202ENSMUST00000170033 Cttnbp2B9EJA2 1648 aa9.96□□□□□ -0.82
Lig4-202ENSMUST00000170033 Ccdc136Q3TVA9 1136 aa9.95□□□□□ -0.82
Lig4-202ENSMUST00000170033 Top2bQ64511 1612 aa9.94□□□□□ -0.82
Lig4-202ENSMUST00000170033 Golga3P55937 1487 aa9.93□□□□□ -0.82
Lig4-202ENSMUST00000170033 Synj1Q8CHC4 1574 aa9.89□□□□□ -0.83
Lig4-202ENSMUST00000170033 Neurod1Q60867 357 aa9.87□□□□□ -0.83
Lig4-202ENSMUST00000170033 CftrP26361 1476 aa9.86□□□□□ -0.83
Lig4-202ENSMUST00000170033 Smarca4Q3TKT4 1613 aaKnown RBP9.86□□□□□ -0.83
Lig4-202ENSMUST00000170033 Cecr2E9Q2Z1 1453 aa9.84□□□□□ -0.83
Lig4-202ENSMUST00000170033 Gm38655A0A286YDK6 273 aa9.82□□□□□ -0.84
Lig4-202ENSMUST00000170033 1700123L14RikQ3V2K7 440 aa9.8□□□□□ -0.84
Lig4-202ENSMUST00000170033 CatipB9EKE5 520 aa9.8□□□□□ -0.84
Lig4-202ENSMUST00000170033 Rsf1E9PWW9 1441 aaKnown RBP9.78□□□□□ -0.84
Lig4-202ENSMUST00000170033 Fmn1Q05860 1466 aa9.73□□□□□ -0.85
Lig4-202ENSMUST00000170033 CenpbP27790 599 aa9.73□□□□□ -0.85
Lig4-202ENSMUST00000170033 UbtfP25976 765 aaKnown RBP9.69□□□□□ -0.86
Lig4-202ENSMUST00000170033 Ccdc88bQ4QRL3 1481 aa9.69□□□□□ -0.86
Lig4-202ENSMUST00000170033 Top2aQ01320 1528 aaKnown RBP9.68□□□□□ -0.86
Lig4-202ENSMUST00000170033 Cc2d2aQ8CFW7 1633 aa9.67□□□□□ -0.86
Lig4-202ENSMUST00000170033 Iqgap2Q3UQ44 1575 aa9.66□□□□□ -0.86
Lig4-202ENSMUST00000170033 TnnQ80Z71 1560 aa9.65□□□□□ -0.87
Lig4-202ENSMUST00000170033 Rapgef2Q8CHG7 1496 aa9.65□□□□□ -0.87
Lig4-202ENSMUST00000170033 Atad2bE9Q166 1460 aaKnown RBP9.64□□□□□ -0.87
Lig4-202ENSMUST00000170033 Supt5hO55201 1082 aaKnown RBP9.64□□□□□ -0.87
Lig4-202ENSMUST00000170033 Ifnlr1Q8CGK5 535 aa9.61□□□□□ -0.87
Lig4-202ENSMUST00000170033 Pds5bQ4VA53 1446 aaKnown RBP9.6□□□□□ -0.87
Lig4-202ENSMUST00000170033 Eif4g1Q6NZJ6 1600 aaKnown RBP9.6□□□□□ -0.87
Lig4-202ENSMUST00000170033 Csrnp3P59055 597 aa9.59□□□□□ -0.87
Lig4-202ENSMUST00000170033 Chic1Q8CBW7 227 aa9.59□□□□□ -0.87
Lig4-202ENSMUST00000170033 Cngb1E1AZ71 1325 aa9.58□□□□□ -0.88
Lig4-202ENSMUST00000170033 NefmP08553 848 aa9.58□□□□□ -0.88
Lig4-202ENSMUST00000170033 Ppargc1bQ8VHJ7 1014 aa9.58□□□□□ -0.88
Lig4-202ENSMUST00000170033 Kcna4Q61423 654 aa9.58□□□□□ -0.88
Lig4-202ENSMUST00000170033 Q8BT18 775 aa9.56□□□□□ -0.88
Lig4-202ENSMUST00000170033 Eif5bQ05D44 1216 aaKnown RBP9.55□□□□□ -0.88
Lig4-202ENSMUST00000170033 Slc4a1apE9PX68 744 aa9.53□□□□□ -0.88
Lig4-202ENSMUST00000170033 Myt1Q8CFC2 1127 aa9.53□□□□□ -0.88
Lig4-202ENSMUST00000170033 Gtf3c5Q8R2T8 520 aa9.52□□□□□ -0.89
Lig4-202ENSMUST00000170033 Lamc3Q9R0B6 1581 aa9.52□□□□□ -0.89
Lig4-202ENSMUST00000170033 Las1lA2BE28 776 aaKnown RBP9.51□□□□□ -0.89
Lig4-202ENSMUST00000170033 Arid3aQ62431 601 aa9.51□□□□□ -0.89
Lig4-202ENSMUST00000170033 Esf1Q3V1V3 845 aaKnown RBP9.5□□□□□ -0.89
Lig4-202ENSMUST00000170033 Rsph4aQ8BYM7 716 aa9.5□□□□□ -0.89
Lig4-202ENSMUST00000170033 Wdr62Q3U3T8 1523 aa9.49□□□□□ -0.89
Lig4-202ENSMUST00000170033 Cep162Q6ZQ06 1403 aa9.48□□□□□ -0.89
Lig4-202ENSMUST00000170033 Ccdc18Q640L5 1455 aa9.46□□□□□ -0.9
Lig4-202ENSMUST00000170033 Map3k1P53349 1493 aa9.44□□□□□ -0.9
Lig4-202ENSMUST00000170033 NrkQ9R0G8 1455 aa9.44□□□□□ -0.9
Lig4-202ENSMUST00000170033 Unc13aQ4KUS2 1712 aa9.43□□□□□ -0.9
Lig4-202ENSMUST00000170033 Frmpd1A2AKB4 1549 aa9.41□□□□□ -0.9
Lig4-202ENSMUST00000170033 Baz1bQ9Z277 1479 aa9.41□□□□□ -0.9
Lig4-202ENSMUST00000170033 TimelessQ9R1X4 1197 aa9.39□□□□□ -0.91
Lig4-202ENSMUST00000170033 Ercc6F8VPZ5 1481 aa9.38□□□□□ -0.91
Lig4-202ENSMUST00000170033 Aplp2Q06335 707 aa9.38□□□□□ -0.91
Lig4-202ENSMUST00000170033 Camsap1A2AHC3 1581 aa9.37□□□□□ -0.91
Lig4-202ENSMUST00000170033 Erich3F6QRE9 1637 aa9.37□□□□□ -0.91
Lig4-202ENSMUST00000170033 AqrQ8CFQ3 1481 aaKnown RBP9.36□□□□□ -0.91
Lig4-202ENSMUST00000170033 Gab3Q8BSM5 595 aa9.36□□□□□ -0.91
Lig4-202ENSMUST00000170033 Shroom4Q1W617 1475 aa9.35□□□□□ -0.91
Lig4-202ENSMUST00000170033 Pknox2Q8BG99 474 aa9.35□□□□□ -0.91
Lig4-202ENSMUST00000170033 Prdm16A2A935 1275 aa9.34□□□□□ -0.92
Lig4-202ENSMUST00000170033 Mier1Q5UAK0 511 aa9.33□□□□□ -0.92
Lig4-202ENSMUST00000170033 Arhgap35Q91YM2 1499 aa9.32□□□□□ -0.92
Lig4-202ENSMUST00000170033 TchhA0A0B4J1F9 1599 aa9.32□□□□□ -0.92
Lig4-202ENSMUST00000170033 Thoc2B1AZI6 1594 aaKnown RBP9.29□□□□□ -0.92
Lig4-202ENSMUST00000170033 Arhgef5E9Q7D5 1581 aa9.28□□□□□ -0.92
Retrieved 100 of 22,080 RNA–protein pairs in 28.5 ms