RNA–Protein interactions for RNA: ENSMUST00000165860.7

Ubr4-212, Transcript of E3 ubiquitin-protein ligase UBR4, mousemouse

TSL 5 BASIC

Gene Ubr4, Length 15,798 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr4-212ENSMUST00000165860 Rpgrip1Q9EPQ2 1331 aa10.65□□□□□ -0.7
Ubr4-212ENSMUST00000165860 Las1lA2BE28 776 aaKnown RBP10.35□□□□□ -0.75
Ubr4-212ENSMUST00000165860 Myt1Q8CFC2 1127 aa10.34□□□□□ -0.75
Ubr4-212ENSMUST00000165860 Rhox8Q6VSS7 320 aa10.09□□□□□ -0.79
Ubr4-212ENSMUST00000165860 Cngb1E1AZ71 1325 aa10.08□□□□□ -0.8
Ubr4-212ENSMUST00000165860 Amer1Q7TS75 1132 aa9.87□□□□□ -0.83
Ubr4-212ENSMUST00000165860 Pelp1Q9DBD5 1123 aaKnown RBP9.81□□□□□ -0.84
Ubr4-212ENSMUST00000165860 Ehmt2Q9Z148 1263 aaKnown RBP9.77□□□□□ -0.85
Ubr4-212ENSMUST00000165860 CenpbP27790 599 aa9.72□□□□□ -0.85
Ubr4-212ENSMUST00000165860 DiexfQ8BTT6 772 aaKnown RBP9.6□□□□□ -0.87
Ubr4-212ENSMUST00000165860 Acin1Q9JIX8 1338 aaKnown RBP9.5□□□□□ -0.89
Ubr4-212ENSMUST00000165860 Zeb1Q64318 1117 aa9.45□□□□□ -0.9
Ubr4-212ENSMUST00000165860 Pcgf6Q99NA9 353 aa9.43□□□□□ -0.9
Ubr4-212ENSMUST00000165860 Wdr66E9Q743 1299 aa9.39□□□□□ -0.91
Ubr4-212ENSMUST00000165860 Rtl5Q5DTT4 599 aa9.32□□□□□ -0.92
Ubr4-212ENSMUST00000165860 Supt5hO55201 1082 aaKnown RBP9.14□□□□□ -0.95
Ubr4-212ENSMUST00000165860 Ccdc9Q8VC31 543 aaKnown RBP9.11□□□□□ -0.95
Ubr4-212ENSMUST00000165860 Cdk11bP24788 784 aaKnown RBP9.1□□□□□ -0.95
Ubr4-212ENSMUST00000165860 CatipB9EKE5 520 aa9.09□□□□□ -0.95
Ubr4-212ENSMUST00000165860 4930567H17RikQ3V0K5 233 aa9.09□□□□□ -0.95
Ubr4-212ENSMUST00000165860 NefmP08553 848 aa9.09□□□□□ -0.95
Ubr4-212ENSMUST00000165860 Ttbk1Q6PCN3 1308 aa9.05□□□□□ -0.96
Ubr4-212ENSMUST00000165860 Neurod1Q60867 357 aa9.02□□□□□ -0.97
Ubr4-212ENSMUST00000165860 Tnnt3Q9QZ47 272 aa9.02□□□□□ -0.97
Ubr4-212ENSMUST00000165860 Ube2uB1AUC4 352 aa9.01□□□□□ -0.97
Ubr4-212ENSMUST00000165860 Ythdc1E9Q5K9 736 aaKnown RBP9□□□□□ -0.97
Ubr4-212ENSMUST00000165860 Ccdc136Q3TVA9 1136 aa8.99□□□□□ -0.97
Ubr4-212ENSMUST00000165860 Stra8P70278 393 aa8.98□□□□□ -0.97
Ubr4-212ENSMUST00000165860 Nop58Q6DFW4 536 aaKnown RBP8.96□□□□□ -0.98
Ubr4-212ENSMUST00000165860 Gab3Q8BSM5 595 aa8.93□□□□□ -0.98
Ubr4-212ENSMUST00000165860 Aplp2Q06335 707 aa8.92□□□□□ -0.98
Ubr4-212ENSMUST00000165860 Trim41Q5NCC3 630 aa8.91□□□□□ -0.98
Ubr4-212ENSMUST00000165860 Csrnp3P59055 597 aa8.89□□□□□ -0.99
Ubr4-212ENSMUST00000165860 4933416C03RikQ3V063 378 aa8.86□□□□□ -0.99
Ubr4-212ENSMUST00000165860 Anks4bQ8K3X6 423 aa8.84□□□□□ -0.99
Ubr4-212ENSMUST00000165860 Bcl11aQ9QYE3 773 aa8.83□□□□□ -1
Ubr4-212ENSMUST00000165860 HrcG5E8J6 738 aa8.81□□□□□ -1
Ubr4-212ENSMUST00000165860 Slc24a1Q91WD8 1130 aa8.8□□□□□ -1
Ubr4-212ENSMUST00000165860 Gm38655A0A286YDK6 273 aa8.8□□□□□ -1
Ubr4-212ENSMUST00000165860 Ppargc1bQ8VHJ7 1014 aa8.79□□□□□ -1
Ubr4-212ENSMUST00000165860 UbtfP25976 765 aaKnown RBP8.79□□□□□ -1
Ubr4-212ENSMUST00000165860 Myt1lP97500 1187 aa8.79□□□□□ -1
Ubr4-212ENSMUST00000165860 1700123L14RikQ3V2K7 440 aa8.78□□□□□ -1
Ubr4-212ENSMUST00000165860 Anp32bQ9EST5 272 aaKnown RBP8.75□□□□□ -1.01
Ubr4-212ENSMUST00000165860 Anp32aO35381 247 aa8.72□□□□□ -1.01
Ubr4-212ENSMUST00000165860 Esf1Q3V1V3 845 aaKnown RBP8.7□□□□□ -1.02
Ubr4-212ENSMUST00000165860 Ccdc180J3QNE4 1664 aa8.69□□□□□ -1.02
Ubr4-212ENSMUST00000165860 Sall2Q9QX96 1004 aa8.66□□□□□ -1.02
Ubr4-212ENSMUST00000165860 BccipQ9CWI3 316 aa8.65□□□□□ -1.02
Ubr4-212ENSMUST00000165860 Mier1Q5UAK0 511 aa8.64□□□□□ -1.03
Ubr4-212ENSMUST00000165860 Eif5bQ05D44 1216 aaKnown RBP8.62□□□□□ -1.03
Ubr4-212ENSMUST00000165860 ClspnQ80YR7 1315 aa8.62□□□□□ -1.03
Ubr4-212ENSMUST00000165860 Npm2Q80W85 207 aa8.59□□□□□ -1.03
Ubr4-212ENSMUST00000165860 DaxxO35613 739 aa8.58□□□□□ -1.04
Ubr4-212ENSMUST00000165860 NeflP08551 543 aa8.58□□□□□ -1.04
Ubr4-212ENSMUST00000165860 Fam71e1A1L3C1 212 aa8.57□□□□□ -1.04
Ubr4-212ENSMUST00000165860 TonslQ6NZL6 1363 aa8.56□□□□□ -1.04
Ubr4-212ENSMUST00000165860 Znf316Q6PGE4 1016 aa8.56□□□□□ -1.04
Ubr4-212ENSMUST00000165860 NrdcQ8BHG1 1161 aa8.55□□□□□ -1.04
Ubr4-212ENSMUST00000165860 Pknox2Q8BG99 474 aa8.55□□□□□ -1.04
Ubr4-212ENSMUST00000165860 Mapk8ip2Q9ERE9 830 aa8.52□□□□□ -1.05
Ubr4-212ENSMUST00000165860 NclP09405 707 aaKnown RBP8.52□□□□□ -1.05
Ubr4-212ENSMUST00000165860 Irx3P81067 507 aa8.48□□□□□ -1.05
Ubr4-212ENSMUST00000165860 Rangap1P46061 589 aaKnown RBP8.45□□□□□ -1.06
Ubr4-212ENSMUST00000165860 Ppp4r2Q0VGB7 417 aa8.43□□□□□ -1.06
Ubr4-212ENSMUST00000165860 Dcaf1Q80TR8 1506 aa8.42□□□□□ -1.06
Ubr4-212ENSMUST00000165860 Ccdc27Q3V036 639 aa8.42□□□□□ -1.06
Ubr4-212ENSMUST00000165860 Calr4Q3TQS0 420 aa8.41□□□□□ -1.06
Ubr4-212ENSMUST00000165860 NischQ80TM9 1593 aa8.41□□□□□ -1.06
Ubr4-212ENSMUST00000165860 Hsp90aa1P07901 733 aaKnown RBP8.41□□□□□ -1.06
Ubr4-212ENSMUST00000165860 Rtl1Q7M732 1744 aa8.4□□□□□ -1.06
Ubr4-212ENSMUST00000165860 Ap3b1Q9Z1T1 1105 aa8.39□□□□□ -1.07
Ubr4-212ENSMUST00000165860 Gtf3c5Q8R2T8 520 aa8.38□□□□□ -1.07
Ubr4-212ENSMUST00000165860 PrkcshO08795 521 aa8.36□□□□□ -1.07
Ubr4-212ENSMUST00000165860 Wdr43Q6ZQL4 677 aaKnown RBP8.33□□□□□ -1.08
Ubr4-212ENSMUST00000165860 Znf326O88291 580 aa8.32□□□□□ -1.08
Ubr4-212ENSMUST00000165860 Polr3glQ8R0C0 218 aa8.31□□□□□ -1.08
Ubr4-212ENSMUST00000165860 Q8BT18 775 aa8.31□□□□□ -1.08
Ubr4-212ENSMUST00000165860 Fam50aQ9WV03 339 aaKnown RBP8.31□□□□□ -1.08
Ubr4-212ENSMUST00000165860 Aebp2Q9Z248 504 aaKnown RBP8.31□□□□□ -1.08
Ubr4-212ENSMUST00000165860 SafbD3YXK2 937 aaKnown RBP8.3□□□□□ -1.08
Ubr4-212ENSMUST00000165860 Upf2A2AT37 1269 aaKnown RBP8.28□□□□□ -1.08
Ubr4-212ENSMUST00000165860 Hnrnpul2Q00PI9 745 aaKnown RBP8.27□□□□□ -1.09
Ubr4-212ENSMUST00000165860 AU015836B2RUM3 263 aa8.27□□□□□ -1.09
Ubr4-212ENSMUST00000165860 Gtf3c3Q3TMP1 882 aa8.26□□□□□ -1.09
Ubr4-212ENSMUST00000165860 4933402E13RikQ9D4D2 429 aa8.26□□□□□ -1.09
Ubr4-212ENSMUST00000165860 Os9Q8K2C7 672 aa8.25□□□□□ -1.09
Ubr4-212ENSMUST00000165860 Tnnt2P50752 301 aa8.24□□□□□ -1.09
Ubr4-212ENSMUST00000165860 Eid3Q3V124 375 aa8.23□□□□□ -1.09
Ubr4-212ENSMUST00000165860 Pdcl3Q8BVF2 240 aa8.22□□□□□ -1.09
Ubr4-212ENSMUST00000165860 Hdac5Q9Z2V6 1113 aa8.2□□□□□ -1.1
Ubr4-212ENSMUST00000165860 ArxO35085 564 aa8.2□□□□□ -1.1
Ubr4-212ENSMUST00000165860 Lmod3E9QA62 571 aa8.19□□□□□ -1.1
Ubr4-212ENSMUST00000165860 Dnttip2Q8R2M2 758 aaKnown RBP8.18□□□□□ -1.1
Ubr4-212ENSMUST00000165860 Hmgb1P63158 215 aaKnown RBP8.16□□□□□ -1.1
Ubr4-212ENSMUST00000165860 CanxP35564 591 aaKnown RBP8.16□□□□□ -1.1
Ubr4-212ENSMUST00000165860 Ifnlr1Q8CGK5 535 aa8.15□□□□□ -1.1
Ubr4-212ENSMUST00000165860 Rrp9Q91WM3 475 aaKnown RBP8.15□□□□□ -1.1
Ubr4-212ENSMUST00000165860 Taok2Q6ZQ29 1240 aa8.15□□□□□ -1.11
Ubr4-212ENSMUST00000165860 Plekhg3Q4VAC9 1341 aa8.14□□□□□ -1.11
Retrieved 100 of 22,080 RNA–protein pairs in 15.1 ms