Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm25239-201ENSMUST00000174915 86 ntBASIC39.32■■■■□ 3.89
Hmgb1P63158 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
Hmgb1P63158 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.76■■■■□ 3.48
Hmgb1P63158 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.61■■■■□ 3.45
Hmgb1P63158 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC35.96■■■■□ 3.35
Hmgb1P63158 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC35.63■■■■□ 3.29
Hmgb1P63158 Psd-208ENSMUST00000224556 2034 ntBASIC35.28■■■■□ 3.24
Hmgb1P63158 Gm15042-201ENSMUST00000120212 883 ntBASIC35.15■■■■□ 3.22
Hmgb1P63158 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
Hmgb1P63158 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.57■■■■□ 3.12
Hmgb1P63158 Gm15045-201ENSMUST00000117359 883 ntBASIC34.48■■■■□ 3.11
Hmgb1P63158 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
Hmgb1P63158 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.25■■■■□ 3.07
Hmgb1P63158 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
Hmgb1P63158 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
Hmgb1P63158 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
Hmgb1P63158 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
Hmgb1P63158 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
Hmgb1P63158 Gm24109-201ENSMUST00000175489 103 ntBASIC33.7■■■□□ 2.99
Hmgb1P63158 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33.68■■■□□ 2.98
Hmgb1P63158 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
Hmgb1P63158 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.42■■■□□ 2.94
Hmgb1P63158 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Hmgb1P63158 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.39■■■□□ 2.94
Hmgb1P63158 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33.32■■■□□ 2.92
Hmgb1P63158 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.28■■■□□ 2.92
Hmgb1P63158 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Hmgb1P63158 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.17■■■□□ 2.9
Hmgb1P63158 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.14■■■□□ 2.9
Hmgb1P63158 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
Hmgb1P63158 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.05■■■□□ 2.88
Hmgb1P63158 Gm23366-201ENSMUST00000175022 89 ntBASIC32.99■■■□□ 2.87
Hmgb1P63158 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Hmgb1P63158 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC32.84■■■□□ 2.85
Hmgb1P63158 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
Hmgb1P63158 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
Hmgb1P63158 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Hmgb1P63158 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
Hmgb1P63158 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Hmgb1P63158 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
Hmgb1P63158 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.49■■■□□ 2.79
Hmgb1P63158 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.42■■■□□ 2.78
Hmgb1P63158 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC32.32■■■□□ 2.77
Hmgb1P63158 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.32■■■□□ 2.76
Hmgb1P63158 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
Hmgb1P63158 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
Hmgb1P63158 AC153911.1-202ENSMUST00000218534 1034 ntBASIC32.27■■■□□ 2.76
Hmgb1P63158 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC32.22■■■□□ 2.75
Hmgb1P63158 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
Hmgb1P63158 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
Hmgb1P63158 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
Hmgb1P63158 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Hmgb1P63158 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Hmgb1P63158 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.54■■■□□ 2.64
Hmgb1P63158 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Hmgb1P63158 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Hmgb1P63158 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC31.47■■■□□ 2.63
Hmgb1P63158 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Hmgb1P63158 Gm42596-201ENSMUST00000196305 1958 ntBASIC31.34■■■□□ 2.61
Hmgb1P63158 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
Hmgb1P63158 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31.32■■■□□ 2.6
Hmgb1P63158 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Hmgb1P63158 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.26■■■□□ 2.6
Hmgb1P63158 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Hmgb1P63158 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
Hmgb1P63158 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Hmgb1P63158 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.08■■■□□ 2.57
Hmgb1P63158 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
Hmgb1P63158 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Hmgb1P63158 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Hmgb1P63158 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.05■■■□□ 2.56
Hmgb1P63158 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Hmgb1P63158 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC30.99■■■□□ 2.55
Hmgb1P63158 Gm27325-201ENSMUST00000175467 74 ntBASIC30.96■■■□□ 2.55
Hmgb1P63158 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Hmgb1P63158 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Hmgb1P63158 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Hmgb1P63158 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Hmgb1P63158 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Hmgb1P63158 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Hmgb1P63158 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Hmgb1P63158 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
Hmgb1P63158 Gm25238-201ENSMUST00000174914 89 ntBASIC30.77■■■□□ 2.52
Hmgb1P63158 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC30.72■■■□□ 2.51
Hmgb1P63158 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC30.68■■■□□ 2.5
Hmgb1P63158 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Hmgb1P63158 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Hmgb1P63158 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Hmgb1P63158 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Hmgb1P63158 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.6■■■□□ 2.49
Hmgb1P63158 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Hmgb1P63158 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Hmgb1P63158 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Hmgb1P63158 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Hmgb1P63158 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
Hmgb1P63158 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Hmgb1P63158 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Hmgb1P63158 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Hmgb1P63158 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
Hmgb1P63158 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms