RNA–Protein interactions for RNA: ENSMUST00000035237.11

Usp4-201, Transcript of Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

APPRIS P3 TSL 1 (best) BASIC

Gene Usp4, Length 3,662 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4-201ENSMUST00000035237 Rhox8Q6VSS7 320 aa26.51■■□□□ 1.83
Usp4-201ENSMUST00000035237 NischQ80TM9 1593 aa26.05■■□□□ 1.76
Usp4-201ENSMUST00000035237 Rpgrip1Q9EPQ2 1331 aa25.42■■□□□ 1.66
Usp4-201ENSMUST00000035237 Ehmt2Q9Z148 1263 aaKnown RBP25.19■■□□□ 1.62
Usp4-201ENSMUST00000035237 Abcc9P70170 1546 aa24.99■■□□□ 1.59
Usp4-201ENSMUST00000035237 Ccdc180J3QNE4 1664 aa24.72■■□□□ 1.55
Usp4-201ENSMUST00000035237 Acin1Q9JIX8 1338 aaKnown RBP24.7■■□□□ 1.54
Usp4-201ENSMUST00000035237 Rtl1Q7M732 1744 aa24.66■■□□□ 1.54
Usp4-201ENSMUST00000035237 Ccdc136Q3TVA9 1136 aa24.33■■□□□ 1.49
Usp4-201ENSMUST00000035237 Abcc8B2RUS7 1588 aa24.3■■□□□ 1.48
Usp4-201ENSMUST00000035237 Pcgf6Q99NA9 353 aa24.26■■□□□ 1.47
Usp4-201ENSMUST00000035237 Gm35339A0A140LHH9 1649 aa24.25■■□□□ 1.47
Usp4-201ENSMUST00000035237 HrcG5E8J6 738 aa23.93■■□□□ 1.42
Usp4-201ENSMUST00000035237 Trim41Q5NCC3 630 aa23.89■■□□□ 1.42
Usp4-201ENSMUST00000035237 Supt5hO55201 1082 aaKnown RBP23.76■■□□□ 1.39
Usp4-201ENSMUST00000035237 Zeb1Q64318 1117 aa23.74■■□□□ 1.39
Usp4-201ENSMUST00000035237 Zcchc6Q5BLK4 1491 aaKnown RBP23.62■■□□□ 1.37
Usp4-201ENSMUST00000035237 Dcaf1Q80TR8 1506 aa23.56■■□□□ 1.36
Usp4-201ENSMUST00000035237 Gab3Q8BSM5 595 aa23.49■■□□□ 1.35
Usp4-201ENSMUST00000035237 Las1lA2BE28 776 aaKnown RBP23.38■■□□□ 1.33
Usp4-201ENSMUST00000035237 Neurod1Q60867 357 aa23.34■■□□□ 1.33
Usp4-201ENSMUST00000035237 Cngb1E1AZ71 1325 aa23.31■■□□□ 1.32
Usp4-201ENSMUST00000035237 Wdr66E9Q743 1299 aa23.18■■□□□ 1.3
Usp4-201ENSMUST00000035237 NefmP08553 848 aa23.1■■□□□ 1.29
Usp4-201ENSMUST00000035237 Mier1Q5UAK0 511 aa22.95■■□□□ 1.26
Usp4-201ENSMUST00000035237 Sall2Q9QX96 1004 aa22.91■■□□□ 1.26
Usp4-201ENSMUST00000035237 Rb1cc1Q9ESK9 1588 aa22.89■■□□□ 1.26
Usp4-201ENSMUST00000035237 Cep164Q5DU05 1446 aa22.84■■□□□ 1.25
Usp4-201ENSMUST00000035237 Ppargc1bQ8VHJ7 1014 aa22.83■■□□□ 1.24
Usp4-201ENSMUST00000035237 UbtfP25976 765 aaKnown RBP22.82■■□□□ 1.24
Usp4-201ENSMUST00000035237 Chic1Q8CBW7 227 aa22.75■■□□□ 1.23
Usp4-201ENSMUST00000035237 Esf1Q3V1V3 845 aaKnown RBP22.73■■□□□ 1.23
Usp4-201ENSMUST00000035237 Csrnp3P59055 597 aa22.72■■□□□ 1.23
Usp4-201ENSMUST00000035237 Cdk11bP24788 784 aaKnown RBP22.65■■□□□ 1.22
Usp4-201ENSMUST00000035237 1700123L14RikQ3V2K7 440 aa22.6■■□□□ 1.21
Usp4-201ENSMUST00000035237 Nop58Q6DFW4 536 aaKnown RBP22.59■■□□□ 1.21
Usp4-201ENSMUST00000035237 Anks4bQ8K3X6 423 aa22.58■■□□□ 1.2
Usp4-201ENSMUST00000035237 Myt1lP97500 1187 aa22.55■■□□□ 1.2
Usp4-201ENSMUST00000035237 CenpbP27790 599 aa22.55■■□□□ 1.2
Usp4-201ENSMUST00000035237 Baz1aO88379 1555 aa22.5■■□□□ 1.19
Usp4-201ENSMUST00000035237 Gm38655A0A286YDK6 273 aa22.45■■□□□ 1.19
Usp4-201ENSMUST00000035237 Aebp2Q9Z248 504 aaKnown RBP22.39■■□□□ 1.17
Usp4-201ENSMUST00000035237 Rsf1E9PWW9 1441 aaKnown RBP22.37■■□□□ 1.17
Usp4-201ENSMUST00000035237 ClspnQ80YR7 1315 aa22.29■■□□□ 1.16
Usp4-201ENSMUST00000035237 Npm2Q80W85 207 aa22.26■■□□□ 1.15
Usp4-201ENSMUST00000035237 Kdm5dQ62240 1548 aa22.2■■□□□ 1.14
Usp4-201ENSMUST00000035237 TonslQ6NZL6 1363 aa22.2■■□□□ 1.14
Usp4-201ENSMUST00000035237 Aplp2Q06335 707 aa22.17■■□□□ 1.14
Usp4-201ENSMUST00000035237 Myt1Q8CFC2 1127 aa22.13■■□□□ 1.13
Usp4-201ENSMUST00000035237 ScribQ80U72 1612 aa22.13■■□□□ 1.13
Usp4-201ENSMUST00000035237 Ccdc88bQ4QRL3 1481 aa22.1■■□□□ 1.13
Usp4-201ENSMUST00000035237 Brd4Q9ESU6 1400 aaKnown RBP22.04■■□□□ 1.12
Usp4-201ENSMUST00000035237 Plekhg3Q4VAC9 1341 aa22.01■■□□□ 1.11
Usp4-201ENSMUST00000035237 NacadQ5SWP3 1504 aa21.98■■□□□ 1.11
Usp4-201ENSMUST00000035237 Golga3P55937 1487 aa21.93■■□□□ 1.1
Usp4-201ENSMUST00000035237 Eid3Q3V124 375 aa21.88■■□□□ 1.09
Usp4-201ENSMUST00000035237 Smarca2Q6DIC0 1577 aa21.88■■□□□ 1.09
Usp4-201ENSMUST00000035237 Mapk8ip2Q9ERE9 830 aa21.86■■□□□ 1.09
Usp4-201ENSMUST00000035237 Ap3b1Q9Z1T1 1105 aa21.83■■□□□ 1.08
Usp4-201ENSMUST00000035237 Tnnt3Q9QZ47 272 aa21.78■■□□□ 1.08
Usp4-201ENSMUST00000035237 Slc24a1Q91WD8 1130 aa21.72■■□□□ 1.07
Usp4-201ENSMUST00000035237 SafbD3YXK2 937 aaKnown RBP21.71■■□□□ 1.07
Usp4-201ENSMUST00000035237 Fam71e1A1L3C1 212 aa21.69■■□□□ 1.06
Usp4-201ENSMUST00000035237 DiexfQ8BTT6 772 aaKnown RBP21.69■■□□□ 1.06
Usp4-201ENSMUST00000035237 Clip1Q922J3 1391 aa21.68■■□□□ 1.06
Usp4-201ENSMUST00000035237 Hnrnpul2Q00PI9 745 aaKnown RBP21.66■■□□□ 1.06
Usp4-201ENSMUST00000035237 NclP09405 707 aaKnown RBP21.63■■□□□ 1.05
Usp4-201ENSMUST00000035237 Cecr2E9Q2Z1 1453 aa21.62■■□□□ 1.05
Usp4-201ENSMUST00000035237 Crybg2B7ZCC2 1516 aa21.59■■□□□ 1.05
Usp4-201ENSMUST00000035237 Stra8P70278 393 aa21.59■■□□□ 1.05
Usp4-201ENSMUST00000035237 Ube2uB1AUC4 352 aa21.58■■□□□ 1.04
Usp4-201ENSMUST00000035237 Fam50aQ9WV03 339 aaKnown RBP21.58■■□□□ 1.04
Usp4-201ENSMUST00000035237 Il27Q8K3I6 234 aa21.57■■□□□ 1.04
Usp4-201ENSMUST00000035237 Pelp1Q9DBD5 1123 aaKnown RBP21.49■■□□□ 1.03
Usp4-201ENSMUST00000035237 Synj1Q8CHC4 1574 aa21.45■■□□□ 1.02
Usp4-201ENSMUST00000035237 Anp32aO35381 247 aa21.44■■□□□ 1.02
Usp4-201ENSMUST00000035237 Cep162Q6ZQ06 1403 aa21.4■■□□□ 1.02
Usp4-201ENSMUST00000035237 Sycp2Q9CUU3 1500 aa21.37■■□□□ 1.01
Usp4-201ENSMUST00000035237 Eif5bQ05D44 1216 aaKnown RBP21.37■■□□□ 1.01
Usp4-201ENSMUST00000035237 Bcl11aQ9QYE3 773 aa21.33■■□□□ 1.01
Usp4-201ENSMUST00000035237 CftrP26361 1476 aa21.31■■□□□ 1
Usp4-201ENSMUST00000035237 Ttbk1Q6PCN3 1308 aa21.31■■□□□ 1
Usp4-201ENSMUST00000035237 Lmod2Q3UHZ5 550 aa21.3■■□□□ 1
Usp4-201ENSMUST00000035237 Rapgef2Q8CHG7 1496 aa21.28■■□□□ 1
Usp4-201ENSMUST00000035237 Calr4Q3TQS0 420 aa21.26■□□□□ 0.99
Usp4-201ENSMUST00000035237 Fmn1Q05860 1466 aa21.12■□□□□ 0.97
Usp4-201ENSMUST00000035237 Setd5Q5XJV7 1441 aa21.11■□□□□ 0.97
Usp4-201ENSMUST00000035237 Rtl5Q5DTT4 599 aa21.09■□□□□ 0.97
Usp4-201ENSMUST00000035237 Ppp4r2Q0VGB7 417 aa21.09■□□□□ 0.97
Usp4-201ENSMUST00000035237 BlmO88700 1416 aa21.07■□□□□ 0.96
Usp4-201ENSMUST00000035237 Cc2d2aQ8CFW7 1633 aa21.06■□□□□ 0.96
Usp4-201ENSMUST00000035237 Eea1Q8BL66 1411 aa21.06■□□□□ 0.96
Usp4-201ENSMUST00000035237 NrdcQ8BHG1 1161 aa21.01■□□□□ 0.95
Usp4-201ENSMUST00000035237 Nolc1E9Q5C9 702 aaKnown RBP21■□□□□ 0.95
Usp4-201ENSMUST00000035237 Ncapd3Q6ZQK0 1506 aa21■□□□□ 0.95
Usp4-201ENSMUST00000035237 Hspa5P20029 655 aaKnown RBP20.98■□□□□ 0.95
Usp4-201ENSMUST00000035237 Znf710Q3U288 666 aa20.97■□□□□ 0.95
Usp4-201ENSMUST00000035237 Wdr43Q6ZQL4 677 aaKnown RBP20.94■□□□□ 0.94
Usp4-201ENSMUST00000035237 Top2bQ64511 1612 aa20.94■□□□□ 0.94
Usp4-201ENSMUST00000035237 Ifnlr1Q8CGK5 535 aa20.93■□□□□ 0.94
Retrieved 100 of 22,080 RNA–protein pairs in 164.5 ms