RNA–Protein interactions for RNA: ENSMUST00000023352.8

Prkdc-201, Transcript of DNA-dependent protein kinase catalytic subunit, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Prkdc, Length 12,647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Prkdc-201ENSMUST00000023352 Rpgrip1Q9EPQ2 1331 aa7.94□□□□□ -1.14
Prkdc-201ENSMUST00000023352 NischQ80TM9 1593 aa7.82□□□□□ -1.16
Prkdc-201ENSMUST00000023352 Rtl1Q7M732 1744 aa7.68□□□□□ -1.18
Prkdc-201ENSMUST00000023352 Rhox8Q6VSS7 320 aa7.57□□□□□ -1.2
Prkdc-201ENSMUST00000023352 Gm35339A0A140LHH9 1649 aa7.55□□□□□ -1.2
Prkdc-201ENSMUST00000023352 Abcc9P70170 1546 aa7.55□□□□□ -1.2
Prkdc-201ENSMUST00000023352 Las1lA2BE28 776 aaKnown RBP7.51□□□□□ -1.21
Prkdc-201ENSMUST00000023352 Ccdc180J3QNE4 1664 aa7.45□□□□□ -1.22
Prkdc-201ENSMUST00000023352 Cngb1E1AZ71 1325 aa7.42□□□□□ -1.22
Prkdc-201ENSMUST00000023352 Myt1Q8CFC2 1127 aa7.32□□□□□ -1.24
Prkdc-201ENSMUST00000023352 Abcc8B2RUS7 1588 aa7.29□□□□□ -1.24
Prkdc-201ENSMUST00000023352 Pelp1Q9DBD5 1123 aaKnown RBP7.22□□□□□ -1.25
Prkdc-201ENSMUST00000023352 Dcaf1Q80TR8 1506 aa7.11□□□□□ -1.27
Prkdc-201ENSMUST00000023352 Trim41Q5NCC3 630 aa7.08□□□□□ -1.28
Prkdc-201ENSMUST00000023352 Wdr66E9Q743 1299 aa7.06□□□□□ -1.28
Prkdc-201ENSMUST00000023352 HrcG5E8J6 738 aa7.06□□□□□ -1.28
Prkdc-201ENSMUST00000023352 Acin1Q9JIX8 1338 aaKnown RBP7.03□□□□□ -1.28
Prkdc-201ENSMUST00000023352 CenpbP27790 599 aa6.99□□□□□ -1.29
Prkdc-201ENSMUST00000023352 Rb1cc1Q9ESK9 1588 aa6.87□□□□□ -1.31
Prkdc-201ENSMUST00000023352 NacadQ5SWP3 1504 aa6.85□□□□□ -1.31
Prkdc-201ENSMUST00000023352 Baz1aO88379 1555 aa6.85□□□□□ -1.31
Prkdc-201ENSMUST00000023352 Amer1Q7TS75 1132 aa6.85□□□□□ -1.31
Prkdc-201ENSMUST00000023352 Crybg2B7ZCC2 1516 aa6.84□□□□□ -1.31
Prkdc-201ENSMUST00000023352 NefmP08553 848 aa6.83□□□□□ -1.32
Prkdc-201ENSMUST00000023352 Brd4Q9ESU6 1400 aaKnown RBP6.82□□□□□ -1.32
Prkdc-201ENSMUST00000023352 Rtl5Q5DTT4 599 aa6.82□□□□□ -1.32
Prkdc-201ENSMUST00000023352 Stra8P70278 393 aa6.8□□□□□ -1.32
Prkdc-201ENSMUST00000023352 Cep164Q5DU05 1446 aa6.77□□□□□ -1.33
Prkdc-201ENSMUST00000023352 Zcchc6Q5BLK4 1491 aaKnown RBP6.75□□□□□ -1.33
Prkdc-201ENSMUST00000023352 4930567H17RikQ3V0K5 233 aa6.75□□□□□ -1.33
Prkdc-201ENSMUST00000023352 Ccdc136Q3TVA9 1136 aa6.74□□□□□ -1.33
Prkdc-201ENSMUST00000023352 Pcgf6Q99NA9 353 aa6.72□□□□□ -1.33
Prkdc-201ENSMUST00000023352 DiexfQ8BTT6 772 aaKnown RBP6.72□□□□□ -1.33
Prkdc-201ENSMUST00000023352 Tnnt3Q9QZ47 272 aa6.72□□□□□ -1.33
Prkdc-201ENSMUST00000023352 Esf1Q3V1V3 845 aaKnown RBP6.71□□□□□ -1.34
Prkdc-201ENSMUST00000023352 Kdm5dQ62240 1548 aa6.66□□□□□ -1.34
Prkdc-201ENSMUST00000023352 Ube2uB1AUC4 352 aa6.63□□□□□ -1.35
Prkdc-201ENSMUST00000023352 Cdk11bP24788 784 aaKnown RBP6.61□□□□□ -1.35
Prkdc-201ENSMUST00000023352 Ccdc9Q8VC31 543 aaKnown RBP6.6□□□□□ -1.35
Prkdc-201ENSMUST00000023352 Zeb1Q64318 1117 aa6.6□□□□□ -1.35
Prkdc-201ENSMUST00000023352 Smarca2Q6DIC0 1577 aa6.59□□□□□ -1.35
Prkdc-201ENSMUST00000023352 Neurod1Q60867 357 aa6.58□□□□□ -1.36
Prkdc-201ENSMUST00000023352 Anp32bQ9EST5 272 aaKnown RBP6.56□□□□□ -1.36
Prkdc-201ENSMUST00000023352 Npm2Q80W85 207 aa6.54□□□□□ -1.36
Prkdc-201ENSMUST00000023352 Golga3P55937 1487 aa6.54□□□□□ -1.36
Prkdc-201ENSMUST00000023352 Aplp2Q06335 707 aa6.54□□□□□ -1.36
Prkdc-201ENSMUST00000023352 ScribQ80U72 1612 aa6.53□□□□□ -1.36
Prkdc-201ENSMUST00000023352 Sycp2Q9CUU3 1500 aa6.53□□□□□ -1.36
Prkdc-201ENSMUST00000023352 Ehmt2Q9Z148 1263 aaKnown RBP6.51□□□□□ -1.37
Prkdc-201ENSMUST00000023352 Anks4bQ8K3X6 423 aa6.48□□□□□ -1.37
Prkdc-201ENSMUST00000023352 Nop58Q6DFW4 536 aaKnown RBP6.47□□□□□ -1.37
Prkdc-201ENSMUST00000023352 Cttnbp2B9EJA2 1648 aa6.43□□□□□ -1.38
Prkdc-201ENSMUST00000023352 Anp32aO35381 247 aa6.43□□□□□ -1.38
Prkdc-201ENSMUST00000023352 Fmn1Q05860 1466 aa6.42□□□□□ -1.38
Prkdc-201ENSMUST00000023352 Ccer2J3QPU5 274 aa6.42□□□□□ -1.38
Prkdc-201ENSMUST00000023352 Hdac5Q9Z2V6 1113 aa6.42□□□□□ -1.38
Prkdc-201ENSMUST00000023352 ClspnQ80YR7 1315 aa6.41□□□□□ -1.38
Prkdc-201ENSMUST00000023352 Gab3Q8BSM5 595 aa6.41□□□□□ -1.38
Prkdc-201ENSMUST00000023352 Supt5hO55201 1082 aaKnown RBP6.41□□□□□ -1.38
Prkdc-201ENSMUST00000023352 NeflP08551 543 aa6.4□□□□□ -1.38
Prkdc-201ENSMUST00000023352 Pds5bQ4VA53 1446 aaKnown RBP6.4□□□□□ -1.38
Prkdc-201ENSMUST00000023352 Ccdc18Q640L5 1455 aa6.4□□□□□ -1.38
Prkdc-201ENSMUST00000023352 CftrP26361 1476 aa6.38□□□□□ -1.39
Prkdc-201ENSMUST00000023352 Smarca4Q3TKT4 1613 aaKnown RBP6.38□□□□□ -1.39
Prkdc-201ENSMUST00000023352 Baz1bQ9Z277 1479 aa6.38□□□□□ -1.39
Prkdc-201ENSMUST00000023352 Rsf1E9PWW9 1441 aaKnown RBP6.38□□□□□ -1.39
Prkdc-201ENSMUST00000023352 Ercc6F8VPZ5 1481 aa6.37□□□□□ -1.39
Prkdc-201ENSMUST00000023352 Myt1lP97500 1187 aa6.35□□□□□ -1.39
Prkdc-201ENSMUST00000023352 Eea1Q8BL66 1411 aa6.35□□□□□ -1.39
Prkdc-201ENSMUST00000023352 TonslQ6NZL6 1363 aa6.34□□□□□ -1.39
Prkdc-201ENSMUST00000023352 NrdcQ8BHG1 1161 aa6.33□□□□□ -1.4
Prkdc-201ENSMUST00000023352 Atad2bE9Q166 1460 aaKnown RBP6.32□□□□□ -1.4
Prkdc-201ENSMUST00000023352 Ythdc1E9Q5K9 736 aaKnown RBP6.32□□□□□ -1.4
Prkdc-201ENSMUST00000023352 4933416C03RikQ3V063 378 aa6.32□□□□□ -1.4
Prkdc-201ENSMUST00000023352 NclP09405 707 aaKnown RBP6.3□□□□□ -1.4
Prkdc-201ENSMUST00000023352 Eif5bQ05D44 1216 aaKnown RBP6.29□□□□□ -1.4
Prkdc-201ENSMUST00000023352 Mia2Q91ZV0 1396 aa6.29□□□□□ -1.4
Prkdc-201ENSMUST00000023352 UbtfP25976 765 aaKnown RBP6.28□□□□□ -1.4
Prkdc-201ENSMUST00000023352 Ttbk1Q6PCN3 1308 aa6.28□□□□□ -1.4
Prkdc-201ENSMUST00000023352 Bcl11aQ9QYE3 773 aa6.27□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Clip1Q922J3 1391 aa6.27□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Map3k1P53349 1493 aa6.26□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Synj1Q8CHC4 1574 aa6.25□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Cep162Q6ZQ06 1403 aa6.25□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Npm1Q61937 292 aaKnown RBP6.25□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Top2bQ64511 1612 aa6.25□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Rapgef2Q8CHG7 1496 aa6.23□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Rpap1Q80TE0 1409 aa6.23□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Top2aQ01320 1528 aaKnown RBP6.23□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Mier1Q5UAK0 511 aa6.23□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Polr1aO35134 1717 aaKnown RBP6.23□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Csrnp3P59055 597 aa6.22□□□□□ -1.41
Prkdc-201ENSMUST00000023352 1700123L14RikQ3V2K7 440 aa6.22□□□□□ -1.41
Prkdc-201ENSMUST00000023352 Iqgap2Q3UQ44 1575 aa6.21□□□□□ -1.42
Prkdc-201ENSMUST00000023352 Setd5Q5XJV7 1441 aa6.2□□□□□ -1.42
Prkdc-201ENSMUST00000023352 Chic1Q8CBW7 227 aa6.19□□□□□ -1.42
Prkdc-201ENSMUST00000023352 Upf2A2AT37 1269 aaKnown RBP6.19□□□□□ -1.42
Prkdc-201ENSMUST00000023352 Arid4bA2CG63 1314 aaKnown RBP6.19□□□□□ -1.42
Prkdc-201ENSMUST00000023352 Ccdc27Q3V036 639 aa6.18□□□□□ -1.42
Prkdc-201ENSMUST00000023352 NrkQ9R0G8 1455 aa6.18□□□□□ -1.42
Retrieved 100 of 22,080 RNA–protein pairs in 13.1 ms