RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W SES1P07284 462 aaKnown RBP3.65□□□□□ -1.83
USE1YGL098W RNR2P09938 399 aaKnown RBP3.65□□□□□ -1.83
USE1YGL098W THR4P16120 514 aaKnown RBP3.65□□□□□ -1.83
USE1YGL098W YME2P32843 850 aa3.65□□□□□ -1.83
USE1YGL098W NUF2P33895 451 aa3.65□□□□□ -1.83
USE1YGL098W RRP1P35178 278 aaPredicted RBP3.65□□□□□ -1.83
USE1YGL098W DID4P36108 232 aa3.65□□□□□ -1.83
USE1YGL098W ESL2P36168 1195 aa3.65□□□□□ -1.83
USE1YGL098W TAF5P38129 798 aa3.65□□□□□ -1.83
USE1YGL098W SPT8P38915 602 aa3.65□□□□□ -1.83
USE1YGL098W MPH1P40562 993 aa3.65□□□□□ -1.83
USE1YGL098W SAP155P43612 1002 aa3.65□□□□□ -1.83
USE1YGL098W NPA3P47122 385 aa3.65□□□□□ -1.83
USE1YGL098W DMA2P53924 522 aa3.65□□□□□ -1.83
USE1YGL098W SUB1P54000 292 aaKnown RBP3.65□□□□□ -1.83
USE1YGL098W UBX2Q04228 584 aa3.65□□□□□ -1.83
USE1YGL098W EIS1Q05050 843 aaKnown RBP3.65□□□□□ -1.83
USE1YGL098W HRQ1Q05549 1077 aa3.65□□□□□ -1.83
USE1YGL098W SLP1Q12232 587 aa3.65□□□□□ -1.83
USE1YGL098W TY3B-GQ99315 1547 aa3.65□□□□□ -1.83
USE1YGL098W SUP35P05453 685 aaKnown RBP3.64□□□□□ -1.83
USE1YGL098W SWI6P09959 803 aa3.64□□□□□ -1.83
USE1YGL098W PHO87P25360 923 aa3.64□□□□□ -1.83
USE1YGL098W SKI2P35207 1287 aaKnown RBP RIP-Chip data3.64□□□□□ -1.83not detected
USE1YGL098W RPC37P36121 282 aa3.64□□□□□ -1.83
USE1YGL098W TPS3P38426 1054 aaKnown RBP3.64□□□□□ -1.83
USE1YGL098W RTR1P40084 226 aaPredicted RBP3.64□□□□□ -1.83
USE1YGL098W CUZ1P53899 274 aa3.64□□□□□ -1.83
USE1YGL098W ARO80Q04052 950 aa3.64□□□□□ -1.83
USE1YGL098W VPS20Q04272 221 aa3.64□□□□□ -1.83
USE1YGL098W VMS1Q04311 632 aaKnown RBP3.64□□□□□ -1.83
USE1YGL098W DFG5Q05031 458 aa3.64□□□□□ -1.83
USE1YGL098W COG4Q06096 861 aa3.64□□□□□ -1.83
USE1YGL098W IMH1Q06704 911 aaKnown RBP3.64□□□□□ -1.83
USE1YGL098W RUD3Q12234 484 aaKnown RBP3.64□□□□□ -1.83
USE1YGL098W RPO31P04051 1460 aa3.63□□□□□ -1.83
USE1YGL098W TY1B-AO13527 1196 aaKnown RBP3.63□□□□□ -1.83
USE1YGL098W BRF1P29056 596 aa3.63□□□□□ -1.83
USE1YGL098W TIF3P34167 436 aaKnown RBP3.63□□□□□ -1.83
USE1YGL098W MCX1P38323 520 aaPredicted RBP3.63□□□□□ -1.83
USE1YGL098W AIM20P40451 204 aa3.63□□□□□ -1.83
USE1YGL098W LEM3P42838 414 aa3.63□□□□□ -1.83
USE1YGL098W ILM1P47155 203 aa3.63□□□□□ -1.83
USE1YGL098W SHE4P51534 789 aa3.63□□□□□ -1.83
USE1YGL098W IST1P53843 298 aaPredicted RBP3.63□□□□□ -1.83
USE1YGL098W INP2Q03824 705 aa3.63□□□□□ -1.83
USE1YGL098W RRB1Q04225 511 aaKnown RBP3.63□□□□□ -1.83
USE1YGL098W GYL1Q04322 720 aa3.63□□□□□ -1.83
USE1YGL098W NKP1Q12493 238 aa3.63□□□□□ -1.83
USE1YGL098W SWI1P09547 1314 aa3.63□□□□□ -1.83
USE1YGL098W ULS1Q08562 1619 aa3.62□□□□□ -1.83
USE1YGL098W CLB4P24871 460 aa3.62□□□□□ -1.83
USE1YGL098W CDC10P25342 322 aaKnown RBP3.62□□□□□ -1.83
USE1YGL098W GCD6P32501 712 aaKnown RBP3.62□□□□□ -1.83
USE1YGL098W TFC3P34111 1160 aa3.62□□□□□ -1.83
USE1YGL098W SEG2P34250 1132 aa3.62□□□□□ -1.83
USE1YGL098W HEL1P36113 551 aa3.62□□□□□ -1.83
USE1YGL098W ISW1P38144 1129 aa3.62□□□□□ -1.83
USE1YGL098W RFC5P38251 354 aa3.62□□□□□ -1.83
USE1YGL098W SEC9P40357 651 aa3.62□□□□□ -1.83
USE1YGL098W CCT5P40413 562 aaKnown RBP3.62□□□□□ -1.83
USE1YGL098W PEX14P53112 341 aa3.62□□□□□ -1.83
USE1YGL098W HUL5P53119 910 aa3.62□□□□□ -1.83
USE1YGL098W YGL082WP53155 381 aa3.62□□□□□ -1.83
USE1YGL098W ASI1P54074 624 aa3.62□□□□□ -1.83
USE1YGL098W RBA50Q04418 439 aa3.62□□□□□ -1.83
USE1YGL098W NOC3Q07896 663 aaPredicted RBP3.62□□□□□ -1.83
USE1YGL098W ATG9Q12142 997 aa3.62□□□□□ -1.83
USE1YGL098W DNF2Q12675 1612 aa3.62□□□□□ -1.83
USE1YGL098W LYS2P07702 1392 aa3.62□□□□□ -1.83
USE1YGL098W SIR4P11978 1358 aa3.62□□□□□ -1.83
USE1YGL098W KRE5P22023 1365 aa3.62□□□□□ -1.83
USE1YGL098W ATG2P53855 1592 aa3.61□□□□□ -1.83
USE1YGL098W CLN1P20437 546 aa3.61□□□□□ -1.83
USE1YGL098W STE11P23561 717 aa3.61□□□□□ -1.83
USE1YGL098W YDJ1P25491 409 aaKnown RBP3.61□□□□□ -1.83
USE1YGL098W CDC60P26637 1090 aaKnown RBP3.61□□□□□ -1.83
USE1YGL098W SWC3P31376 625 aa3.61□□□□□ -1.83
USE1YGL098W ASF1P32447 279 aa3.61□□□□□ -1.83
USE1YGL098W ISF1P32488 338 aa3.61□□□□□ -1.83
USE1YGL098W ELM1P32801 640 aa3.61□□□□□ -1.83
USE1YGL098W TTI1P36097 1038 aa3.61□□□□□ -1.83
USE1YGL098W RGD1P38339 666 aa3.61□□□□□ -1.83
USE1YGL098W NPR3P38742 1146 aa3.61□□□□□ -1.83
USE1YGL098W SIT1P39980 628 aa3.61□□□□□ -1.83
USE1YGL098W TFG2P41896 400 aaPredicted RBP3.61□□□□□ -1.83
USE1YGL098W SPR3P41901 512 aa3.61□□□□□ -1.83
USE1YGL098W YRB1P41920 201 aaKnown RBP3.61□□□□□ -1.83
USE1YGL098W CTK3P46963 296 aaPredicted RBP3.61□□□□□ -1.83
USE1YGL098W SET2P46995 733 aaKnown RBP3.61□□□□□ -1.83
USE1YGL098W CTH1P47976 325 aa3.61□□□□□ -1.83
USE1YGL098W INP52P50942 1183 aa3.61□□□□□ -1.83
USE1YGL098W ADE12P80210 433 aaKnown RBP3.61□□□□□ -1.83
USE1YGL098W RSA3Q05942 220 aaKnown RBP3.61□□□□□ -1.83
USE1YGL098W STE23Q06010 1027 aa3.61□□□□□ -1.83
USE1YGL098W NKP2Q06162 153 aa3.61□□□□□ -1.83
USE1YGL098W YCG1Q06680 1035 aa3.61□□□□□ -1.83
USE1YGL098W CMS1Q07897 291 aaKnown RBP3.61□□□□□ -1.83
USE1YGL098W RTC1Q08281 1341 aa3.61□□□□□ -1.83
USE1YGL098W BNR1P40450 1375 aa3.61□□□□□ -1.83
Retrieved 100 of 5,963 RNA–protein pairs in 65.4 ms