RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeastyeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC48YDL126C YML133CQ03099 1374 aa5.39□□□□□ -1.55
CDC48YDL126C YLL067CQ07888 1374 aa5.39□□□□□ -1.55
CDC48YDL126C YLL066CQ99208 1374 aa5.39□□□□□ -1.55
CDC48YDL126C FUI1P38196 639 aa5.39□□□□□ -1.55
CDC48YDL126C FAA3P39002 694 aa5.39□□□□□ -1.55
CDC48YDL126C YFL034WP43564 1073 aa5.39□□□□□ -1.55
CDC48YDL126C RMD1Q03441 430 aa5.39□□□□□ -1.55
CDC48YDL126C CLC1P17891 233 aa5.38□□□□□ -1.55
CDC48YDL126C MRPL33P20084 86 aa5.38□□□□□ -1.55
CDC48YDL126C NSE3Q05541 303 aa5.38□□□□□ -1.55
CDC48YDL126C STE6P12866 1290 aa5.38□□□□□ -1.55
CDC48YDL126C CDC11P32458 415 aa5.38□□□□□ -1.55
CDC48YDL126C RPS26AP39938 119 aaKnown RBP5.38□□□□□ -1.55
CDC48YDL126C RPS26BP39939 119 aaKnown RBP5.38□□□□□ -1.55
CDC48YDL126C YJR142WP47173 342 aa5.38□□□□□ -1.55
CDC48YDL126C YNR029CP53729 429 aaKnown RBP5.38□□□□□ -1.55
CDC48YDL126C YNL165WP53891 406 aa5.38□□□□□ -1.55
CDC48YDL126C YNL011CP53980 444 aa5.38□□□□□ -1.55
CDC48YDL126C FBP26P32604 452 aa5.37□□□□□ -1.55
CDC48YDL126C UBP12P39538 1254 aa5.37□□□□□ -1.55
CDC48YDL126C RCM1P53972 490 aa5.37□□□□□ -1.55
CDC48YDL126C UFD2P54860 961 aa5.37□□□□□ -1.55
CDC48YDL126C CTR9P89105 1077 aa5.37□□□□□ -1.55
CDC48YDL126C RGD2P43556 714 aa5.37□□□□□ -1.55
CDC48YDL126C BDF2Q07442 638 aa5.37□□□□□ -1.55
CDC48YDL126C SNF2P22082 1703 aa5.37□□□□□ -1.55
CDC48YDL126C COBP00163 385 aa5.36□□□□□ -1.55
CDC48YDL126C MRT4P33201 236 aaKnown RBP5.36□□□□□ -1.55
CDC48YDL126C VPS35P34110 944 aa5.36□□□□□ -1.55
CDC48YDL126C NHA1Q99271 985 aa5.36□□□□□ -1.55
CDC48YDL126C RRP14P36080 434 aaKnown RBP5.36□□□□□ -1.55
CDC48YDL126C HOS4P40480 1083 aa5.36□□□□□ -1.55
CDC48YDL126C FAF1P40546 346 aaPredicted RBP5.36□□□□□ -1.55
CDC48YDL126C APP1P53933 587 aa5.36□□□□□ -1.55
CDC48YDL126C MCM1P11746 286 aa5.35□□□□□ -1.55
CDC48YDL126C PPH3P32345 308 aa5.35□□□□□ -1.55
CDC48YDL126C YHR020WP38708 688 aaKnown RBP5.35□□□□□ -1.55
CDC48YDL126C YGR053CP53234 283 aa5.35□□□□□ -1.55
CDC48YDL126C PRS1P32895 427 aaKnown RBP5.35□□□□□ -1.55
CDC48YDL126C SPT23P35210 1082 aa5.35□□□□□ -1.55
CDC48YDL126C SAP30P38429 201 aa5.35□□□□□ -1.55
CDC48YDL126C NAB2P32505 525 aaKnown RBP RIP-Chip data5.34□□□□□ -1.55not detected
CDC48YDL126C RPS31P05759 152 aaKnown RBP5.34□□□□□ -1.56
CDC48YDL126C PIF1P07271 859 aa5.34□□□□□ -1.56
CDC48YDL126C VMA3P25515 160 aa5.34□□□□□ -1.56
CDC48YDL126C DUR3P33413 735 aa5.34□□□□□ -1.56
CDC48YDL126C YBL086CP38177 466 aa5.34□□□□□ -1.56
CDC48YDL126C SNU66Q12420 587 aaPredicted RBP5.34□□□□□ -1.56
CDC48YDL126C AIR2Q12476 344 aaKnown RBP5.34□□□□□ -1.56
CDC48YDL126C PBP2P38151 413 aaKnown RBP RIP-Chip data5.33□□□□□ -1.56not detected
CDC48YDL126C IES5P40060 125 aa5.33□□□□□ -1.56
CDC48YDL126C FOX2Q02207 900 aaKnown RBP5.33□□□□□ -1.56
CDC48YDL126C UGA4P32837 571 aa5.33□□□□□ -1.56
CDC48YDL126C SEC6P32844 805 aa5.33□□□□□ -1.56
CDC48YDL126C MNR2P35724 969 aa5.33□□□□□ -1.56
CDC48YDL126C GNP1P48813 663 aa5.33□□□□□ -1.56
CDC48YDL126C YGR130CP53278 816 aa5.33□□□□□ -1.56
CDC48YDL126C ECM16Q04217 1267 aaKnown RBP5.33□□□□□ -1.56
CDC48YDL126C BDS1Q08347 646 aa5.33□□□□□ -1.56
CDC48YDL126C TY4B-HP0C2J7 1802 aa5.33□□□□□ -1.56
CDC48YDL126C TY4B-JP47024 1803 aa5.33□□□□□ -1.56
CDC48YDL126C YEF3P16521 1044 aaKnown RBP5.32□□□□□ -1.56
CDC48YDL126C ERP2P39704 215 aa5.32□□□□□ -1.56
CDC48YDL126C PTC2P39966 464 aaKnown RBP5.32□□□□□ -1.56
CDC48YDL126C ESF1Q06344 628 aaKnown RBP5.32□□□□□ -1.56
CDC48YDL126C UTR2P32623 467 aa5.31□□□□□ -1.56
CDC48YDL126C PPG1P32838 368 aa5.31□□□□□ -1.56
CDC48YDL126C YKL069WP36088 180 aa5.31□□□□□ -1.56
CDC48YDL126C PIC2P40035 300 aa5.31□□□□□ -1.56
CDC48YDL126C YJL049WP47048 450 aa5.31□□□□□ -1.56
CDC48YDL126C COG4Q06096 861 aa5.31□□□□□ -1.56
CDC48YDL126C PUS5Q06244 254 aa5.31□□□□□ -1.56
CDC48YDL126C WTM2Q12206 467 aa5.31□□□□□ -1.56
CDC48YDL126C ADE6P38972 1358 aaKnown RBP5.31□□□□□ -1.56
CDC48YDL126C LEU2P04173 364 aaPredicted RBP5.31□□□□□ -1.56
CDC48YDL126C TRK1P12685 1235 aa5.31□□□□□ -1.56
CDC48YDL126C PWP2P25635 923 aaKnown RBP5.31□□□□□ -1.56
CDC48YDL126C GCD6P32501 712 aaKnown RBP5.31□□□□□ -1.56
CDC48YDL126C VPS24P36095 224 aaKnown RBP5.31□□□□□ -1.56
CDC48YDL126C TFG1P41895 735 aaPredicted RBP5.31□□□□□ -1.56
CDC48YDL126C BDP1P46678 594 aa5.31□□□□□ -1.56
CDC48YDL126C MTR4P47047 1073 aaKnown RBP5.31□□□□□ -1.56
CDC48YDL126C PSK2Q08217 1101 aa5.31□□□□□ -1.56
CDC48YDL126C NKP1Q12493 238 aa5.31□□□□□ -1.56
CDC48YDL126C RPP0P05317 312 aaKnown RBP5.3□□□□□ -1.56
CDC48YDL126C RPC31P17890 251 aa5.3□□□□□ -1.56
CDC48YDL126C RPS0AP32905 252 aaKnown RBP5.3□□□□□ -1.56
CDC48YDL126C RPT2P40327 437 aaKnown RBP5.3□□□□□ -1.56
CDC48YDL126C NTA1P40354 457 aa5.3□□□□□ -1.56
CDC48YDL126C HXT8P40886 569 aa5.3□□□□□ -1.56
CDC48YDL126C TAP42Q04372 366 aa5.3□□□□□ -1.56
CDC48YDL126C TMA64Q04600 565 aaKnown RBP5.3□□□□□ -1.56
CDC48YDL126C UTP4Q06679 776 aaKnown RBP5.3□□□□□ -1.56
CDC48YDL126C TIF6Q12522 245 aaKnown RBP5.3□□□□□ -1.56
CDC48YDL126C HEM13P11353 328 aaKnown RBP5.3□□□□□ -1.56
CDC48YDL126C CDC34P14682 295 aa5.3□□□□□ -1.56
CDC48YDL126C MSN1P22148 382 aa5.3□□□□□ -1.56
CDC48YDL126C GRX1P25373 110 aaKnown RBP5.3□□□□□ -1.56
CDC48YDL126C SHM1P37292 490 aaPredicted RBP5.3□□□□□ -1.56
CDC48YDL126C SUM1P46676 1062 aa5.3□□□□□ -1.56
Retrieved 100 of 5,963 RNA–protein pairs in 9.4 ms