RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 FBXO31Q5XUX0 539 aaPredicted RBP16.47■□□□□ 0.23
CLN3-210ENST00000563874 WAPLQ7Z5K2 1190 aa16.47■□□□□ 0.23
CLN3-210ENST00000563874 YTHDC2Q9H6S0 1430 aaKnown RBP16.47■□□□□ 0.23
CLN3-210ENST00000563874 NFE2L2Q16236 605 aa16.47■□□□□ 0.23
CLN3-210ENST00000563874 GCC1Q96CN9 775 aa16.47■□□□□ 0.23
CLN3-210ENST00000563874 MBIPQ9NS73 344 aa16.47■□□□□ 0.23
CLN3-210ENST00000563874 SLC52A1Q9NWF4 448 aa16.47■□□□□ 0.23
CLN3-210ENST00000563874 PDE4CQ08493 712 aa16.46■□□□□ 0.23
CLN3-210ENST00000563874 RAB3GAP1Q15042 981 aa16.46■□□□□ 0.23
CLN3-210ENST00000563874 GBP4Q96PP9 640 aa16.46■□□□□ 0.23
CLN3-210ENST00000563874 PIK3C2BO00750 1634 aa16.46■□□□□ 0.22
CLN3-210ENST00000563874 FAM83GA6ND36 823 aa16.45■□□□□ 0.22
CLN3-210ENST00000563874 ZRANB1Q9UGI0 708 aa16.45■□□□□ 0.22
CLN3-210ENST00000563874 C8orf58Q8NAV2 365 aa16.44■□□□□ 0.22
CLN3-210ENST00000563874 GAS2L2Q8NHY3 880 aa16.44■□□□□ 0.22
CLN3-210ENST00000563874 STAG3Q9UJ98 1225 aa16.44■□□□□ 0.22
CLN3-210ENST00000563874 FAM135BQ49AJ0 1406 aa16.44■□□□□ 0.22
CLN3-210ENST00000563874 K7ELQ4 463 aaPredicted RBP16.44■□□□□ 0.22
CLN3-210ENST00000563874 SSFA2P28290 1259 aa16.44■□□□□ 0.22
CLN3-210ENST00000563874 DCTN1Q14203 1278 aa16.44■□□□□ 0.22
CLN3-210ENST00000563874 TWISTNBQ3B726 338 aaPredicted RBP16.44■□□□□ 0.22
CLN3-210ENST00000563874 PDIA4P13667 645 aaKnown RBP16.44■□□□□ 0.22
CLN3-210ENST00000563874 CLCN1P35523 988 aa16.44■□□□□ 0.22
CLN3-210ENST00000563874 MED14O60244 1454 aa16.43■□□□□ 0.22
CLN3-210ENST00000563874 CIZ1Q9ULV3 898 aaPredicted RBP16.43■□□□□ 0.22
CLN3-210ENST00000563874 ERBB4Q15303 1308 aa16.43■□□□□ 0.22
CLN3-210ENST00000563874 GNAI1P63096 354 aa16.42■□□□□ 0.22
CLN3-210ENST00000563874 ZNF428Q96B54 188 aa16.42■□□□□ 0.22
CLN3-210ENST00000563874 BRPF1P55201 1214 aaPredicted RBP16.42■□□□□ 0.22
CLN3-210ENST00000563874 ZFYVE9O95405 1425 aa16.42■□□□□ 0.22
CLN3-210ENST00000563874 GSPT1P15170 499 aaKnown RBP16.42■□□□□ 0.22
CLN3-210ENST00000563874 NME9Q86XW9 330 aa16.42■□□□□ 0.22
CLN3-210ENST00000563874 CFAP74Q9C0B2 1584 aa16.41■□□□□ 0.22
CLN3-210ENST00000563874 C16orf71Q8IYS4 520 aaPredicted RBP16.41■□□□□ 0.22
CLN3-210ENST00000563874 ARHGAP45Q92619 1136 aa16.41■□□□□ 0.22
CLN3-210ENST00000563874 MYO5BQ9ULV0 1848 aa16.41■□□□□ 0.22
CLN3-210ENST00000563874 APBB1O00213 710 aa16.41■□□□□ 0.22
CLN3-210ENST00000563874 RRS1Q15050 365 aaKnown RBP16.41■□□□□ 0.22
CLN3-210ENST00000563874 IFT57Q9NWB7 429 aa16.41■□□□□ 0.22
CLN3-210ENST00000563874 ABCC4O15439 1325 aa16.41■□□□□ 0.22
CLN3-210ENST00000563874 CDC45O75419 566 aa16.4■□□□□ 0.22
CLN3-210ENST00000563874 YEATS2Q9ULM3 1422 aa16.4■□□□□ 0.22
CLN3-210ENST00000563874 ESPNB1AK53 854 aa16.39■□□□□ 0.22
CLN3-210ENST00000563874 CHMP4BQ9H444 224 aaKnown RBP16.39■□□□□ 0.22
CLN3-210ENST00000563874 PTCH1Q13635 1447 aa16.39■□□□□ 0.21
CLN3-210ENST00000563874 IL13P35225 146 aa16.39■□□□□ 0.21
CLN3-210ENST00000563874 CALD1Q05682 793 aaKnown RBP16.39■□□□□ 0.21
CLN3-210ENST00000563874 TRIM44Q96DX7 344 aaPredicted RBP16.39■□□□□ 0.21
CLN3-210ENST00000563874 ARHGEF40Q8TER5 1519 aa16.39■□□□□ 0.21
CLN3-210ENST00000563874 ANKRD26Q9UPS8 1709 aa16.39■□□□□ 0.21
CLN3-210ENST00000563874 NCKAP5LQ9HCH0 1330 aa16.39■□□□□ 0.21
CLN3-210ENST00000563874 A0A0U1RQG5 324 aaPredicted RBP16.38■□□□□ 0.21
CLN3-210ENST00000563874 ZNF853P0CG23 659 aa16.38■□□□□ 0.21
CLN3-210ENST00000563874 KRT24Q2M2I5 525 aa16.38■□□□□ 0.21
CLN3-210ENST00000563874 PLEKHM2Q8IWE5 1019 aa16.38■□□□□ 0.21
CLN3-210ENST00000563874 OTUD7AQ8TE49 926 aaPredicted RBP16.38■□□□□ 0.21
CLN3-210ENST00000563874 ARHGAP31Q2M1Z3 1444 aa16.38■□□□□ 0.21
CLN3-210ENST00000563874 PIK3R4Q99570 1358 aa16.38■□□□□ 0.21
CLN3-210ENST00000563874 DIP2CQ9Y2E4 1556 aa16.37■□□□□ 0.21
CLN3-210ENST00000563874 SKOR2Q2VWA4 1001 aaPredicted RBP16.37■□□□□ 0.21
CLN3-210ENST00000563874 CFAP44Q96MT7 982 aa16.37■□□□□ 0.21
CLN3-210ENST00000563874 API5Q9BZZ5 524 aaKnown RBP16.36■□□□□ 0.21
CLN3-210ENST00000563874 DDX49Q9Y6V7 483 aaKnown RBP16.36■□□□□ 0.21
CLN3-210ENST00000563874 ISY1Q9ULR0 285 aaKnown RBP16.36■□□□□ 0.21
CLN3-210ENST00000563874 SMARCA5O60264 1052 aaPredicted RBP16.35■□□□□ 0.21
CLN3-210ENST00000563874 TMEM131LA2VDJ0 1609 aa16.35■□□□□ 0.21
CLN3-210ENST00000563874 BAG4O95429 457 aaKnown RBP16.34■□□□□ 0.21
CLN3-210ENST00000563874 ALKQ9UM73 1620 aa16.34■□□□□ 0.21
CLN3-210ENST00000563874 GOLGA6L22H0YM25 854 aa16.34■□□□□ 0.21
CLN3-210ENST00000563874 NCLP19338 710 aaKnown RBP16.34■□□□□ 0.21
CLN3-210ENST00000563874 PKP1Q13835 747 aa16.34■□□□□ 0.21
CLN3-210ENST00000563874 CDC42BPGQ6DT37 1551 aa16.34■□□□□ 0.21
CLN3-210ENST00000563874 KIF20BQ96Q89 1820 aa16.33■□□□□ 0.21
CLN3-210ENST00000563874 TTC22Q5TAA0 569 aa16.33■□□□□ 0.21
CLN3-210ENST00000563874 MCTP1Q6DN14 999 aa16.33■□□□□ 0.21
CLN3-210ENST00000563874 DCTPP1Q9H773 170 aa16.33■□□□□ 0.21
CLN3-210ENST00000563874 CLTCQ00610 1675 aaKnown RBP16.33■□□□□ 0.2
CLN3-210ENST00000563874 AEBP1Q8IUX7 1158 aa16.33■□□□□ 0.2
CLN3-210ENST00000563874 MAP2P11137 1827 aaKnown RBP16.33■□□□□ 0.2
CLN3-210ENST00000563874 AK9Q5TCS8 1911 aa16.32■□□□□ 0.2
CLN3-210ENST00000563874 RIMS2Q9UQ26 1411 aa16.32■□□□□ 0.2
CLN3-210ENST00000563874 NASPP49321 788 aaPredicted RBP16.31■□□□□ 0.2
CLN3-210ENST00000563874 LMOD3Q0VAK6 560 aa16.31■□□□□ 0.2
CLN3-210ENST00000563874 RABEP1Q15276 862 aa16.31■□□□□ 0.2
CLN3-210ENST00000563874 COG3Q96JB2 828 aa16.31■□□□□ 0.2
CLN3-210ENST00000563874 USP26Q9BXU7 913 aa16.31■□□□□ 0.2
CLN3-210ENST00000563874 MCM10Q7L590 875 aa16.3■□□□□ 0.2
CLN3-210ENST00000563874 TXNDC2Q86VQ3 553 aa16.3■□□□□ 0.2
CLN3-210ENST00000563874 SDSP20132 328 aa16.3■□□□□ 0.2
CLN3-210ENST00000563874 PTMSP20962 102 aa16.3■□□□□ 0.2
CLN3-210ENST00000563874 PREX1Q8TCU6 1659 aa16.3■□□□□ 0.2
CLN3-210ENST00000563874 KLHL40Q2TBA0 621 aa16.3■□□□□ 0.2
CLN3-210ENST00000563874 CAVIN1Q6NZI2 390 aaKnown RBP16.3■□□□□ 0.2
CLN3-210ENST00000563874 CHAMP1Q96JM3 812 aa16.3■□□□□ 0.2
CLN3-210ENST00000563874 NEO1Q92859 1461 aa16.29■□□□□ 0.2
CLN3-210ENST00000563874 ZGPATQ8N5A5 531 aaKnown RBP16.29■□□□□ 0.2
CLN3-210ENST00000563874 WASLO00401 505 aaPredicted RBP16.29■□□□□ 0.2
CLN3-210ENST00000563874 SULT6B1Q6IMI4 303 aa16.29■□□□□ 0.2
CLN3-210ENST00000563874 ANKRD44Q8N8A2 993 aa16.29■□□□□ 0.2
CLN3-210ENST00000563874 MEIS3Q99687 375 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms