RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 NISCHQ9Y2I1 1504 aa26.46■■□□□ 1.83
CLN3-210ENST00000563874 SHROOM4Q9ULL8 1493 aa23.12■■□□□ 1.29
CLN3-210ENST00000563874 SUPT5HO00267 1087 aaKnown RBP22.8■■□□□ 1.24
CLN3-210ENST00000563874 ZCCHC6Q5VYS8 1495 aaKnown RBP22.42■■□□□ 1.18
CLN3-210ENST00000563874 DCAF8L2P0C7V8 631 aa22.27■■□□□ 1.16
CLN3-210ENST00000563874 CCDC180Q9P1Z9 1646 aa22.19■■□□□ 1.14
CLN3-210ENST00000563874 CHIC1Q5VXU3 224 aa22.16■■□□□ 1.14
CLN3-210ENST00000563874 MYO15BQ96JP2 1530 aa22.16■■□□□ 1.14
CLN3-210ENST00000563874 HRCP23327 699 aa21.94■■□□□ 1.1
CLN3-210ENST00000563874 PCGF6Q9BYE7 350 aa21.88■■□□□ 1.09
CLN3-210ENST00000563874 LOC105371045A0A1W2PR82 267 aa21.65■■□□□ 1.06
CLN3-210ENST00000563874 PPARGC1BQ86YN6 1023 aaKnown RBP21.63■■□□□ 1.05
CLN3-210ENST00000563874 DCAF1Q9Y4B6 1507 aa21.55■■□□□ 1.04
CLN3-210ENST00000563874 TRIM26Q12899 539 aaPredicted RBP21.25■□□□□ 0.99
CLN3-210ENST00000563874 ABCC9O60706 1549 aa21.19■□□□□ 0.98
CLN3-210ENST00000563874 RSF1Q96T23 1441 aaPredicted RBP21.13■□□□□ 0.97
CLN3-210ENST00000563874 SCRIBQ14160 1630 aa21.12■□□□□ 0.97
CLN3-210ENST00000563874 FAM9AQ8IZU1 332 aaPredicted RBP21.11■□□□□ 0.97
CLN3-210ENST00000563874 TRIM41Q8WV44 630 aa21.11■□□□□ 0.97
CLN3-210ENST00000563874 EHMT2Q96KQ7 1210 aa21.06■□□□□ 0.96
CLN3-210ENST00000563874 RB1CC1Q8TDY2 1594 aa20.96■□□□□ 0.95
CLN3-210ENST00000563874 ZEB1P37275 1124 aaPredicted RBP20.81■□□□□ 0.92
CLN3-210ENST00000563874 CECR2Q9BXF3 1484 aa20.77■□□□□ 0.91
CLN3-210ENST00000563874 MROH2BQ7Z745 1585 aa20.67■□□□□ 0.9
CLN3-210ENST00000563874 WIZO95785 1651 aa20.57■□□□□ 0.88
CLN3-210ENST00000563874 NACADO15069 1562 aa20.53■□□□□ 0.88
CLN3-210ENST00000563874 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.5■□□□□ 0.87
CLN3-210ENST00000563874 SCAF1Q9H7N4 1312 aaKnown RBP20.46■□□□□ 0.87
CLN3-210ENST00000563874 TTBK1Q5TCY1 1321 aaPredicted RBP20.42■□□□□ 0.86
CLN3-210ENST00000563874 CCER1Q8TC90 406 aaPredicted RBP20.41■□□□□ 0.86
CLN3-210ENST00000563874 PELP1Q8IZL8 1130 aaKnown RBP20.39■□□□□ 0.85
CLN3-210ENST00000563874 BAZ1AQ9NRL2 1556 aaPredicted RBP20.35■□□□□ 0.85
CLN3-210ENST00000563874 ABCC8Q09428 1581 aa20.28■□□□□ 0.84
CLN3-210ENST00000563874 EIF4G1Q04637 1599 aaKnown RBP20.28■□□□□ 0.84
CLN3-210ENST00000563874 CCDC88BA6NC98 1476 aa20.26■□□□□ 0.83
CLN3-210ENST00000563874 SOGA1O94964 1423 aa20.17■□□□□ 0.82
CLN3-210ENST00000563874 CEP162Q5TB80 1403 aa20.16■□□□□ 0.82
CLN3-210ENST00000563874 TOP2AP11388 1531 aaKnown RBP20.15■□□□□ 0.82
CLN3-210ENST00000563874 NEUROD1Q13562 356 aa20.13■□□□□ 0.81
CLN3-210ENST00000563874 DIEXFQ68CQ4 756 aaKnown RBP20.13■□□□□ 0.81
CLN3-210ENST00000563874 ACIN1Q9UKV3 1341 aaKnown RBP20.12■□□□□ 0.81
CLN3-210ENST00000563874 UBTFP17480 764 aaKnown RBP20.11■□□□□ 0.81
CLN3-210ENST00000563874 WRNQ14191 1432 aaPredicted RBP eCLIP20.09■□□□□ 0.81
CLN3-210ENST00000563874 SMARCA2P51531 1590 aa20.09■□□□□ 0.81
CLN3-210ENST00000563874 SMARCA4P51532 1647 aa20.08■□□□□ 0.81
CLN3-210ENST00000563874 MYT1Q01538 1121 aa20.07■□□□□ 0.8
CLN3-210ENST00000563874 RUSC2Q8N2Y8 1516 aa20.07■□□□□ 0.8
CLN3-210ENST00000563874 CSRNP3Q8WYN3 585 aa20.06■□□□□ 0.8
CLN3-210ENST00000563874 TNIKQ9UKE5 1360 aa20.04■□□□□ 0.8
CLN3-210ENST00000563874 GTF3C3Q9Y5Q9 886 aa19.96■□□□□ 0.79
CLN3-210ENST00000563874 PABPN1Q86U42 306 aaKnown RBP eCLIP19.95■□□□□ 0.78
CLN3-210ENST00000563874 CENPBP07199 599 aaPredicted RBP19.94■□□□□ 0.78
CLN3-210ENST00000563874 EEA1Q15075 1411 aa19.9■□□□□ 0.78
CLN3-210ENST00000563874 HNRNPUL2Q1KMD3 747 aaKnown RBP19.88■□□□□ 0.77
CLN3-210ENST00000563874 UNC13AQ9UPW8 1703 aa19.88■□□□□ 0.77
CLN3-210ENST00000563874 GOLGA3Q08378 1498 aa19.87■□□□□ 0.77
CLN3-210ENST00000563874 ZNF316A6NFI3 1004 aaPredicted RBP19.86■□□□□ 0.77
CLN3-210ENST00000563874 YTHDC1Q96MU7 727 aaKnown RBP19.82■□□□□ 0.76
CLN3-210ENST00000563874 RANGAP1P46060 587 aaPredicted RBP19.82■□□□□ 0.76
CLN3-210ENST00000563874 CLIP1P30622 1438 aa19.73■□□□□ 0.75
CLN3-210ENST00000563874 CEP164Q9UPV0 1460 aa19.72■□□□□ 0.75
CLN3-210ENST00000563874 SYNJ1O43426 1573 aa19.72■□□□□ 0.75
CLN3-210ENST00000563874 MIER1Q8N108 512 aa19.7■□□□□ 0.74
CLN3-210ENST00000563874 APLP2Q06481 763 aa19.67■□□□□ 0.74
CLN3-210ENST00000563874 BICRAQ9NZM4 1560 aa19.67■□□□□ 0.74
CLN3-210ENST00000563874 RAPGEF2Q9Y4G8 1499 aa19.63■□□□□ 0.73
CLN3-210ENST00000563874 VPS8Q8N3P4 1428 aa19.63■□□□□ 0.73
CLN3-210ENST00000563874 KIF21BO75037 1637 aa19.62■□□□□ 0.73
CLN3-210ENST00000563874 PEG3Q9GZU2 1588 aa19.58■□□□□ 0.72
CLN3-210ENST00000563874 ATAD2BQ9ULI0 1458 aa19.55■□□□□ 0.72
CLN3-210ENST00000563874 BAZ1BQ9UIG0 1483 aaKnown RBP19.53■□□□□ 0.72
CLN3-210ENST00000563874 DNAJC5BQ9UF47 199 aa19.53■□□□□ 0.72
CLN3-210ENST00000563874 KANK4Q5T7N3 995 aaPredicted RBP19.42■□□□□ 0.7
CLN3-210ENST00000563874 TOP2BQ02880 1626 aa19.37■□□□□ 0.69
CLN3-210ENST00000563874 DHX57Q6P158 1386 aaKnown RBP19.37■□□□□ 0.69
CLN3-210ENST00000563874 ARAP1Q96P48 1450 aa19.33■□□□□ 0.69
CLN3-210ENST00000563874 ITGAEP38570 1179 aa19.31■□□□□ 0.68
CLN3-210ENST00000563874 PRXQ9BXM0 1461 aa19.3■□□□□ 0.68
CLN3-210ENST00000563874 PRKCSHP14314 528 aaPredicted RBP19.28■□□□□ 0.68
CLN3-210ENST00000563874 CLSPNQ9HAW4 1339 aa19.27■□□□□ 0.68
CLN3-210ENST00000563874 ERICH3Q5RHP9 1530 aa19.25■□□□□ 0.67
CLN3-210ENST00000563874 BIVM-ERCC5R4GMW8 1640 aa19.24■□□□□ 0.67
CLN3-210ENST00000563874 CUX1P39880 1505 aa19.2■□□□□ 0.66
CLN3-210ENST00000563874 KIF27Q86VH2 1401 aa19.18■□□□□ 0.66
CLN3-210ENST00000563874 RRBP1Q9P2E9 1410 aaKnown RBP19.17■□□□□ 0.66
CLN3-210ENST00000563874 CCNB3Q8WWL7 1395 aa19.16■□□□□ 0.66
CLN3-210ENST00000563874 ARHGAP35Q9NRY4 1499 aa19.13■□□□□ 0.65
CLN3-210ENST00000563874 SUPT16HQ9Y5B9 1047 aaKnown RBP19.13■□□□□ 0.65
CLN3-210ENST00000563874 KCNH8Q96L42 1107 aa19.08■□□□□ 0.64
CLN3-210ENST00000563874 NCAPD3P42695 1498 aa19.06■□□□□ 0.64
CLN3-210ENST00000563874 RAB3GAP2Q9H2M9 1393 aa19.06■□□□□ 0.64
CLN3-210ENST00000563874 CUX2O14529 1486 aa19.04■□□□□ 0.64
CLN3-210ENST00000563874 HMGXB3Q12766 1538 aa19.02■□□□□ 0.63
CLN3-210ENST00000563874 CFTRP13569 1480 aa19.02■□□□□ 0.63
CLN3-210ENST00000563874 FAM50AQ14320 339 aaKnown RBP18.99■□□□□ 0.63
CLN3-210ENST00000563874 IGF1RP08069 1367 aa18.99■□□□□ 0.63
CLN3-210ENST00000563874 P3H3Q8IVL6 736 aa18.99■□□□□ 0.63
CLN3-210ENST00000563874 ATP1B4Q9UN42 357 aaPredicted RBP18.99■□□□□ 0.63
CLN3-210ENST00000563874 SIN3AQ96ST3 1273 aa18.98■□□□□ 0.63
CLN3-210ENST00000563874 MAPKBP1O60336 1514 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms