RNA–Protein interactions for RNA: ENST00000440653.1

HDAC6-209, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 658 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-209ENST00000440653 HSPA6P17066 643 aa12.16□□□□□ -0.46
HDAC6-209ENST00000440653 GOLGB1Q14789 3259 aaKnown RBP12.16□□□□□ -0.46
HDAC6-209ENST00000440653 RNF123Q5XPI4 1314 aa12.15□□□□□ -0.46
HDAC6-209ENST00000440653 COL13A1Q5TAT6 717 aaPredicted RBP12.15□□□□□ -0.46
HDAC6-209ENST00000440653 ABCA3Q99758 1704 aa12.14□□□□□ -0.47
HDAC6-209ENST00000440653 TECPR2O15040 1411 aa12.14□□□□□ -0.47
HDAC6-209ENST00000440653 PPP2R1AP30153 589 aa12.14□□□□□ -0.47
HDAC6-209ENST00000440653 WDR43Q15061 677 aaKnown RBP eCLIP12.14□□□□□ -0.47
HDAC6-209ENST00000440653 NGEFQ8N5V2 710 aa12.14□□□□□ -0.47
HDAC6-209ENST00000440653 POLR3AO14802 1390 aaPredicted RBP12.14□□□□□ -0.47
HDAC6-209ENST00000440653 ATP7BP35670 1465 aa12.14□□□□□ -0.47
HDAC6-209ENST00000440653 CNGB1Q14028 1251 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-209ENST00000440653 TRAK1Q9UPV9 953 aa12.13□□□□□ -0.47
HDAC6-209ENST00000440653 ITSN1Q15811 1721 aa12.13□□□□□ -0.47
HDAC6-209ENST00000440653 CGNL1Q0VF96 1302 aa12.12□□□□□ -0.47
HDAC6-209ENST00000440653 GPR162Q16538 588 aa12.12□□□□□ -0.47
HDAC6-209ENST00000440653 LMOD2Q6P5Q4 547 aa12.12□□□□□ -0.47
HDAC6-209ENST00000440653 PPP4R2Q9NY27 417 aa12.12□□□□□ -0.47
HDAC6-209ENST00000440653 ABCC11Q96J66 1382 aa12.12□□□□□ -0.47
HDAC6-209ENST00000440653 TNS3Q68CZ2 1445 aa12.11□□□□□ -0.47
HDAC6-209ENST00000440653 CDC42BPGQ6DT37 1551 aa12.11□□□□□ -0.47
HDAC6-209ENST00000440653 MON2Q7Z3U7 1717 aa12.11□□□□□ -0.47
HDAC6-209ENST00000440653 PRELPP51888 382 aa12.1□□□□□ -0.47
HDAC6-209ENST00000440653 AKAP12Q02952 1782 aa12.1□□□□□ -0.47
HDAC6-209ENST00000440653 TOPAZ1Q8N9V7 1692 aa12.1□□□□□ -0.47
HDAC6-209ENST00000440653 SGIP1Q9BQI5 828 aa12.09□□□□□ -0.47
HDAC6-209ENST00000440653 SPATA31A1Q5TZJ5 1347 aa12.08□□□□□ -0.48
HDAC6-209ENST00000440653 TMEM132EQ6IEE7 984 aa12.07□□□□□ -0.48
HDAC6-209ENST00000440653 A0A1W2PP64 1363 aa12.06□□□□□ -0.48
HDAC6-209ENST00000440653 COL14A1Q05707 1796 aaKnown RBP12.06□□□□□ -0.48
HDAC6-209ENST00000440653 WAPLQ7Z5K2 1190 aa12.06□□□□□ -0.48
HDAC6-209ENST00000440653 PSME1Q06323 249 aa12.05□□□□□ -0.48
HDAC6-209ENST00000440653 TNS4Q8IZW8 715 aa12.05□□□□□ -0.48
HDAC6-209ENST00000440653 PROM2Q8N271 834 aa12.05□□□□□ -0.48
HDAC6-209ENST00000440653 DNAJC5GQ8N7S2 189 aa12.05□□□□□ -0.48
HDAC6-209ENST00000440653 ARXQ96QS3 562 aa12.05□□□□□ -0.48
HDAC6-209ENST00000440653 CARD14Q9BXL6 1004 aa12.05□□□□□ -0.48
HDAC6-209ENST00000440653 BCL11BQ9C0K0 894 aaPredicted RBP12.05□□□□□ -0.48
HDAC6-209ENST00000440653 CD163L1Q9NR16 1453 aa12.05□□□□□ -0.48
HDAC6-209ENST00000440653 ATP10DQ9P241 1426 aa12.04□□□□□ -0.48
HDAC6-209ENST00000440653 KIF1AQ12756 1690 aa12.04□□□□□ -0.48
HDAC6-209ENST00000440653 PTF1AQ7RTS3 328 aa12.04□□□□□ -0.48
HDAC6-209ENST00000440653 CFAP53Q96M91 514 aa12.04□□□□□ -0.48
HDAC6-209ENST00000440653 TERF2IPQ9NYB0 399 aa12.04□□□□□ -0.48
HDAC6-209ENST00000440653 USP35Q9P2H5 1018 aa12.04□□□□□ -0.48
HDAC6-209ENST00000440653 SBNO1A3KN83 1393 aa12.04□□□□□ -0.48
HDAC6-209ENST00000440653 RGPD8O14715 1765 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-209ENST00000440653 RRP1P56182 461 aaKnown RBP12.03□□□□□ -0.48
HDAC6-209ENST00000440653 NCBP3Q53F19 620 aaKnown RBP12.03□□□□□ -0.48
HDAC6-209ENST00000440653 MORC1Q86VD1 984 aa12.03□□□□□ -0.48
HDAC6-209ENST00000440653 POGKQ9P215 609 aa12.03□□□□□ -0.48
HDAC6-209ENST00000440653 PHF8Q9UPP1 1060 aa12.03□□□□□ -0.48
HDAC6-209ENST00000440653 ZNF521Q96K83 1311 aa12.03□□□□□ -0.48
HDAC6-209ENST00000440653 ARHGEF10O15013 1369 aa12.03□□□□□ -0.48
HDAC6-209ENST00000440653 COL3A1P02461 1466 aaPredicted RBP12.02□□□□□ -0.48
HDAC6-209ENST00000440653 SIRT1Q96EB6 747 aa12.02□□□□□ -0.49
HDAC6-209ENST00000440653 PRAM1Q96QH2 718 aa12.02□□□□□ -0.49
HDAC6-209ENST00000440653 MTFR1LQ9H019 292 aa12.02□□□□□ -0.49
HDAC6-209ENST00000440653 STRN4Q9NRL3 753 aa12.02□□□□□ -0.49
HDAC6-209ENST00000440653 RCAN3Q9UKA8 241 aa12.02□□□□□ -0.49
HDAC6-209ENST00000440653 ADAMTS8Q9UP79 889 aa12.02□□□□□ -0.49
HDAC6-209ENST00000440653 FMN2Q9NZ56 1722 aa12.01□□□□□ -0.49
HDAC6-209ENST00000440653 PLSCR1O15162 318 aa12.01□□□□□ -0.49
HDAC6-209ENST00000440653 SRPK2P78362 688 aaKnown RBP12.01□□□□□ -0.49
HDAC6-209ENST00000440653 ZNF526Q8TF50 670 aaPredicted RBP12.01□□□□□ -0.49
HDAC6-209ENST00000440653 GPBP1L1Q9HC44 474 aaPredicted RBP12.01□□□□□ -0.49
HDAC6-209ENST00000440653 MAP3K5Q99683 1374 aa12.01□□□□□ -0.49
HDAC6-209ENST00000440653 PLEKHH1Q9ULM0 1364 aa12.01□□□□□ -0.49
HDAC6-209ENST00000440653 EDC4Q6P2E9 1401 aaKnown RBP12.01□□□□□ -0.49
HDAC6-209ENST00000440653 HDGFL2Q7Z4V5 671 aaPredicted RBP12□□□□□ -0.49
HDAC6-209ENST00000440653 SLC12A5Q9H2X9 1139 aa12□□□□□ -0.49
HDAC6-209ENST00000440653 TSHZ2Q9NRE2 1034 aa12□□□□□ -0.49
HDAC6-209ENST00000440653 PCDH10Q9P2E7 1040 aa12□□□□□ -0.49
HDAC6-209ENST00000440653 IRX6P78412 446 aaPredicted RBP11.99□□□□□ -0.49
HDAC6-209ENST00000440653 CHRNA2Q15822 529 aa11.99□□□□□ -0.49
HDAC6-209ENST00000440653 SLC15A2Q16348 729 aa11.99□□□□□ -0.49
HDAC6-209ENST00000440653 KLHL34Q8N239 644 aa11.99□□□□□ -0.49
HDAC6-209ENST00000440653 STK26Q9P289 416 aa11.99□□□□□ -0.49
HDAC6-209ENST00000440653 YBX3P16989 372 aaKnown RBP eCLIP11.98□□□□□ -0.49
HDAC6-209ENST00000440653 GOLGA2Q08379 1002 aa11.98□□□□□ -0.49
HDAC6-209ENST00000440653 PRDM11Q9NQV5 511 aa11.98□□□□□ -0.49
HDAC6-209ENST00000440653 STK32BQ9NY57 414 aa11.98□□□□□ -0.49
HDAC6-209ENST00000440653 RGPD3A6NKT7 1758 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-209ENST00000440653 RGPD4Q7Z3J3 1758 aa11.97□□□□□ -0.49
HDAC6-209ENST00000440653 CPSF1Q10570 1443 aaKnown RBP11.97□□□□□ -0.49
HDAC6-209ENST00000440653 MINK1Q8N4C8 1332 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-209ENST00000440653 BARGINQ6ZT62 677 aa11.97□□□□□ -0.49
HDAC6-209ENST00000440653 NLGN2Q8NFZ4 835 aa11.97□□□□□ -0.49
HDAC6-209ENST00000440653 CABP2Q9NPB3 220 aa11.97□□□□□ -0.49
HDAC6-209ENST00000440653 PPIP5K1Q6PFW1 1433 aa11.96□□□□□ -0.49
HDAC6-209ENST00000440653 E9PSI1 815 aa11.96□□□□□ -0.49
HDAC6-209ENST00000440653 APLP1P51693 650 aa11.96□□□□□ -0.49
HDAC6-209ENST00000440653 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.96□□□□□ -0.49
HDAC6-209ENST00000440653 PMFBP1Q8TBY8 1022 aa11.96□□□□□ -0.49
HDAC6-209ENST00000440653 USP54Q70EL1 1684 aa11.96□□□□□ -0.5
HDAC6-209ENST00000440653 PCNTO95613 3336 aa11.96□□□□□ -0.5
HDAC6-209ENST00000440653 SBF2Q86WG5 1849 aa11.95□□□□□ -0.5
HDAC6-209ENST00000440653 RUNDC1Q96C34 613 aa11.94□□□□□ -0.5
HDAC6-209ENST00000440653 CCDC136Q96JN2 1154 aa11.94□□□□□ -0.5
HDAC6-209ENST00000440653 CDK19Q9BWU1 502 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms