RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 CDK11AQ9UQ88 783 aaPredicted RBP7.14□□□□□ -1.27
CD44-202ENST00000278385 FAM187AA6NFU0 413 aa7.13□□□□□ -1.27
CD44-202ENST00000278385 GDF9O60383 454 aa7.13□□□□□ -1.27
CD44-202ENST00000278385 VASH1Q7L8A9 365 aaPredicted RBP7.13□□□□□ -1.27
CD44-202ENST00000278385 GJD4Q96KN9 370 aaPredicted RBP7.13□□□□□ -1.27
CD44-202ENST00000278385 EIF4G2P78344 907 aaKnown RBP eCLIP7.12□□□□□ -1.27
CD44-202ENST00000278385 NBPF20Q3BBV1 942 aa7.12□□□□□ -1.27
CD44-202ENST00000278385 SH3BP5LQ7L8J4 393 aa7.12□□□□□ -1.27
CD44-202ENST00000278385 KCTD17Q8N5Z5 321 aa7.12□□□□□ -1.27
CD44-202ENST00000278385 GDPD2Q9HCC8 539 aa7.12□□□□□ -1.27
CD44-202ENST00000278385 PKD2L1Q9P0L9 805 aa7.12□□□□□ -1.27
CD44-202ENST00000278385 ARID3CA6NKF2 412 aa7.11□□□□□ -1.27
CD44-202ENST00000278385 DGAT1O75907 488 aa7.11□□□□□ -1.27
CD44-202ENST00000278385 NR1H3Q13133 447 aa7.11□□□□□ -1.27
CD44-202ENST00000278385 Q6ZNB5 142 aa7.11□□□□□ -1.27
CD44-202ENST00000278385 ADAM32Q8TC27 787 aa7.11□□□□□ -1.27
CD44-202ENST00000278385 ESF1Q9H501 851 aaKnown RBP7.11□□□□□ -1.27
CD44-202ENST00000278385 TBC1D2BQ9UPU7 963 aa7.11□□□□□ -1.27
CD44-202ENST00000278385 PCDHB9Q9Y5E1 797 aa7.11□□□□□ -1.27
CD44-202ENST00000278385 MPNDQ8N594 471 aa7.1□□□□□ -1.27
CD44-202ENST00000278385 RGS22Q8NE09 1264 aa7.1□□□□□ -1.27
CD44-202ENST00000278385 NR5A1Q13285 461 aa7.09□□□□□ -1.27
CD44-202ENST00000278385 ERFEQ4G0M1 354 aa7.09□□□□□ -1.27
CD44-202ENST00000278385 RNF20Q5VTR2 975 aa7.09□□□□□ -1.27
CD44-202ENST00000278385 SH3RF1Q7Z6J0 888 aa7.09□□□□□ -1.27
CD44-202ENST00000278385 PUS7Q96PZ0 661 aaKnown RBP7.09□□□□□ -1.27
CD44-202ENST00000278385 ADH1CP00326 375 aa7.08□□□□□ -1.28
CD44-202ENST00000278385 DHX9Q08211 1270 aaKnown RBP7.08□□□□□ -1.28
CD44-202ENST00000278385 SEMA3FQ13275 785 aa7.08□□□□□ -1.28
CD44-202ENST00000278385 CCDC125Q86Z20 511 aa7.08□□□□□ -1.28
CD44-202ENST00000278385 TRMT44Q8IYL2 757 aaKnown RBP7.08□□□□□ -1.28
CD44-202ENST00000278385 TOR4AQ9NXH8 423 aa7.08□□□□□ -1.28
CD44-202ENST00000278385 SIAH2O43255 324 aa7.07□□□□□ -1.28
CD44-202ENST00000278385 FBXO45P0C2W1 286 aa7.07□□□□□ -1.28
CD44-202ENST00000278385 SOX11P35716 441 aa7.07□□□□□ -1.28
CD44-202ENST00000278385 COG6Q9Y2V7 657 aa7.07□□□□□ -1.28
CD44-202ENST00000278385 MAP4K5Q9Y4K4 846 aa7.07□□□□□ -1.28
CD44-202ENST00000278385 TLL2Q9Y6L7 1015 aa7.07□□□□□ -1.28
CD44-202ENST00000278385 TRIM67Q6ZTA4 783 aa7.06□□□□□ -1.28
CD44-202ENST00000278385 CDK15Q96Q40 435 aa7.06□□□□□ -1.28
CD44-202ENST00000278385 KCTD15Q96SI1 283 aaPredicted RBP7.06□□□□□ -1.28
CD44-202ENST00000278385 TRAIPQ9BWF2 469 aa7.06□□□□□ -1.28
CD44-202ENST00000278385 C1QTNF2Q9BXJ5 285 aa7.06□□□□□ -1.28
CD44-202ENST00000278385 PGPEP1Q9NXJ5 209 aa7.06□□□□□ -1.28
CD44-202ENST00000278385 NCAPD3P42695 1498 aa7.05□□□□□ -1.28
CD44-202ENST00000278385 J3QL48 77 aa7.05□□□□□ -1.28
CD44-202ENST00000278385 FSHRP23945 695 aa7.05□□□□□ -1.28
CD44-202ENST00000278385 NNTQ13423 1086 aa7.05□□□□□ -1.28
CD44-202ENST00000278385 CTC1Q2NKJ3 1217 aa7.05□□□□□ -1.28
CD44-202ENST00000278385 C4orf48Q5BLP8 95 aa7.05□□□□□ -1.28
CD44-202ENST00000278385 AXIN1O15169 862 aa7.04□□□□□ -1.28
CD44-202ENST00000278385 RAB15P59190 212 aa7.04□□□□□ -1.28
CD44-202ENST00000278385 VAC14Q08AM6 782 aa7.04□□□□□ -1.28
CD44-202ENST00000278385 SLFNL1Q499Z3 407 aa7.04□□□□□ -1.28
CD44-202ENST00000278385 SEPT12Q8IYM1 358 aa7.04□□□□□ -1.28
CD44-202ENST00000278385 EMILIN1Q9Y6C2 1016 aa7.04□□□□□ -1.28
CD44-202ENST00000278385 UPP2O95045 317 aa7.03□□□□□ -1.28
CD44-202ENST00000278385 SMPD1P17405 629 aa7.03□□□□□ -1.28
CD44-202ENST00000278385 PROSER2Q86WR7 435 aaPredicted RBP7.03□□□□□ -1.28
CD44-202ENST00000278385 CCDC116Q8IYX3 515 aa7.03□□□□□ -1.28
CD44-202ENST00000278385 MTMR7Q9Y216 660 aa7.03□□□□□ -1.28
CD44-202ENST00000278385 WDR4P57081 412 aaKnown RBP7.02□□□□□ -1.29
CD44-202ENST00000278385 TRAF7Q6Q0C0 670 aa7.02□□□□□ -1.29
CD44-202ENST00000278385 ATAD2BQ9ULI0 1458 aa7.02□□□□□ -1.29
CD44-202ENST00000278385 A6NJR5 290 aa7.01□□□□□ -1.29
CD44-202ENST00000278385 CAPN5O15484 640 aaPredicted RBP7.01□□□□□ -1.29
CD44-202ENST00000278385 CLUAP1Q96AJ1 413 aa7.01□□□□□ -1.29
CD44-202ENST00000278385 POM121Q96HA1 1249 aa7.01□□□□□ -1.29
CD44-202ENST00000278385 CHMP4AQ9BY43 222 aa7.01□□□□□ -1.29
CD44-202ENST00000278385 GRM5P41594 1212 aa7□□□□□ -1.29
CD44-202ENST00000278385 IRF5Q13568 498 aa7□□□□□ -1.29
CD44-202ENST00000278385 SCARF1Q14162 830 aa7□□□□□ -1.29
CD44-202ENST00000278385 CCDC82Q8N4S0 544 aa7□□□□□ -1.29
CD44-202ENST00000278385 HPS1Q92902 700 aa7□□□□□ -1.29
CD44-202ENST00000278385 SIRT1Q96EB6 747 aa7□□□□□ -1.29
CD44-202ENST00000278385 ZIC2O95409 532 aaPredicted RBP6.99□□□□□ -1.29
CD44-202ENST00000278385 MYCP01106 439 aaPredicted RBP6.99□□□□□ -1.29
CD44-202ENST00000278385 AVPP01185 164 aa6.99□□□□□ -1.29
CD44-202ENST00000278385 TMCO4Q5TGY1 634 aa6.99□□□□□ -1.29
CD44-202ENST00000278385 RNF135Q8IUD6 432 aa6.99□□□□□ -1.29
CD44-202ENST00000278385 OCSTAMPQ9BR26 566 aa6.99□□□□□ -1.29
CD44-202ENST00000278385 CEP126Q9P2H0 1117 aa6.99□□□□□ -1.29
CD44-202ENST00000278385 SMARCA2P51531 1590 aa6.99□□□□□ -1.29
CD44-202ENST00000278385 BAZ1AQ9NRL2 1556 aaPredicted RBP6.99□□□□□ -1.29
CD44-202ENST00000278385 GIGYF1O75420 1035 aaPredicted RBP6.98□□□□□ -1.29
CD44-202ENST00000278385 RBM25P49756 843 aaKnown RBP6.98□□□□□ -1.29
CD44-202ENST00000278385 INTS6LQ5JSJ4 861 aaKnown RBP6.98□□□□□ -1.29
CD44-202ENST00000278385 PPP1R26Q5T8A7 1209 aaPredicted RBP6.98□□□□□ -1.29
CD44-202ENST00000278385 SMCPP49901 116 aaPredicted RBP6.97□□□□□ -1.29
CD44-202ENST00000278385 CALR3Q96L12 384 aaKnown RBP6.97□□□□□ -1.29
CD44-202ENST00000278385 PCDHB11Q9Y5F2 797 aa6.97□□□□□ -1.29
CD44-202ENST00000278385 MFAP1P55081 439 aaKnown RBP6.96□□□□□ -1.3
CD44-202ENST00000278385 AEBP1Q8IUX7 1158 aa6.96□□□□□ -1.3
CD44-202ENST00000278385 CRIPAKQ8N1N5 446 aa6.96□□□□□ -1.3
CD44-202ENST00000278385 SENP2Q9HC62 589 aa6.96□□□□□ -1.3
CD44-202ENST00000278385 SMARCA4P51532 1647 aa6.96□□□□□ -1.3
CD44-202ENST00000278385 ESPNB1AK53 854 aa6.95□□□□□ -1.3
CD44-202ENST00000278385 ERVH48-1M5A8F1 160 aa6.95□□□□□ -1.3
CD44-202ENST00000278385 USP4Q13107 963 aa6.95□□□□□ -1.3
CD44-202ENST00000278385 HDGFL1Q5TGJ6 251 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms