RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 Zranb3Q6NZP1 1069 aa11.16□□□□□ -0.62
Trim39-205ENSMUST00000173369 Slc12a5Q91V14 1138 aa11.16□□□□□ -0.62
Trim39-205ENSMUST00000173369 Nid2O88322 1403 aa11.16□□□□□ -0.62
Trim39-205ENSMUST00000173369 Gm10471E9Q1C7 252 aa11.16□□□□□ -0.62
Trim39-205ENSMUST00000173369 Ccdc129Q14B48 1034 aa11.16□□□□□ -0.62
Trim39-205ENSMUST00000173369 RgmbQ7TQ33 436 aa11.16□□□□□ -0.62
Trim39-205ENSMUST00000173369 Kif1aP33173 1695 aa11.16□□□□□ -0.62
Trim39-205ENSMUST00000173369 Atp10bB1AWN4 1474 aa11.16□□□□□ -0.62
Trim39-205ENSMUST00000173369 Zmym3Q9JLM4 1370 aa11.16□□□□□ -0.62
Trim39-205ENSMUST00000173369 Sugp2Q8CH09 1067 aa11.15□□□□□ -0.62
Trim39-205ENSMUST00000173369 Fam50bQ9WTJ8 334 aa11.15□□□□□ -0.62
Trim39-205ENSMUST00000173369 OptnQ8K3K8 584 aa11.15□□□□□ -0.62
Trim39-205ENSMUST00000173369 U2af1Q9D883 239 aaKnown RBP11.15□□□□□ -0.62
Trim39-205ENSMUST00000173369 Uhrf1bp1lA2RSJ4 1457 aa11.15□□□□□ -0.62
Trim39-205ENSMUST00000173369 Cdk12Q14AX6 1484 aaKnown RBP11.15□□□□□ -0.62
Trim39-205ENSMUST00000173369 Golgb1E9PVZ8 3238 aa11.15□□□□□ -0.63
Trim39-205ENSMUST00000173369 Larp1bA0A0A6YXJ7 370 aaKnown RBP11.15□□□□□ -0.63
Trim39-205ENSMUST00000173369 Eif4a2P10630 407 aa11.15□□□□□ -0.63
Trim39-205ENSMUST00000173369 Anp32bQ9EST5 272 aaKnown RBP11.15□□□□□ -0.63
Trim39-205ENSMUST00000173369 Card10P58660 1021 aa11.14□□□□□ -0.63
Trim39-205ENSMUST00000173369 Tsen2Q6P7W5 460 aa11.14□□□□□ -0.63
Trim39-205ENSMUST00000173369 Smg6P61406 1418 aaKnown RBP11.14□□□□□ -0.63
Trim39-205ENSMUST00000173369 Nol11Q8BJW5 723 aaKnown RBP11.14□□□□□ -0.63
Trim39-205ENSMUST00000173369 TnrQ8BYI9 1358 aa11.14□□□□□ -0.63
Trim39-205ENSMUST00000173369 Atp7bQ64446 1462 aa11.13□□□□□ -0.63
Trim39-205ENSMUST00000173369 CrklP47941 303 aa11.13□□□□□ -0.63
Trim39-205ENSMUST00000173369 ZgpatQ8VDM1 511 aa11.13□□□□□ -0.63
Trim39-205ENSMUST00000173369 Gprasp1Q5U4C1 1347 aa11.13□□□□□ -0.63
Trim39-205ENSMUST00000173369 Rab3gap2Q8BMG7 1366 aa11.13□□□□□ -0.63
Trim39-205ENSMUST00000173369 Eya1P97767 591 aa11.12□□□□□ -0.63
Trim39-205ENSMUST00000173369 Emilin2Q8K482 1074 aa11.12□□□□□ -0.63
Trim39-205ENSMUST00000173369 PalmQ9Z0P4 383 aa11.12□□□□□ -0.63
Trim39-205ENSMUST00000173369 CemipQ8BI06 1361 aa11.12□□□□□ -0.63
Trim39-205ENSMUST00000173369 Tex14Q7M6U3 1450 aa11.11□□□□□ -0.63
Trim39-205ENSMUST00000173369 Apaf1O88879 1249 aa11.11□□□□□ -0.63
Trim39-205ENSMUST00000173369 Esx1O88933 382 aa11.11□□□□□ -0.63
Trim39-205ENSMUST00000173369 Nhsl1Q8CAF4 1587 aa11.11□□□□□ -0.63
Trim39-205ENSMUST00000173369 Rsph6aQ8CDR2 708 aa11.1□□□□□ -0.63
Trim39-205ENSMUST00000173369 GsdmaQ9EST1 446 aa11.09□□□□□ -0.63
Trim39-205ENSMUST00000173369 Fam135bQ9DAI6 1403 aa11.09□□□□□ -0.63
Trim39-205ENSMUST00000173369 Eif5bQ05D44 1216 aaKnown RBP11.09□□□□□ -0.63
Trim39-205ENSMUST00000173369 Ano8Q6PB70 1060 aa11.09□□□□□ -0.63
Trim39-205ENSMUST00000173369 Slit2Q9R1B9 1521 aa11.09□□□□□ -0.63
Trim39-205ENSMUST00000173369 Snap23O09044 210 aa11.08□□□□□ -0.63
Trim39-205ENSMUST00000173369 Irx6Q9ER75 438 aa11.08□□□□□ -0.63
Trim39-205ENSMUST00000173369 Nfat5Q9WV30 1534 aa11.08□□□□□ -0.64
Trim39-205ENSMUST00000173369 InhbeO08717 350 aa11.08□□□□□ -0.64
Trim39-205ENSMUST00000173369 Trim28Q62318 834 aa11.08□□□□□ -0.64
Trim39-205ENSMUST00000173369 Zpr1Q62384 459 aa11.08□□□□□ -0.64
Trim39-205ENSMUST00000173369 Parp14Q2EMV9 1817 aa11.08□□□□□ -0.64
Trim39-205ENSMUST00000173369 Stra8P70278 393 aa11.08□□□□□ -0.64
Trim39-205ENSMUST00000173369 Rad21Q61550 635 aaKnown RBP11.08□□□□□ -0.64
Trim39-205ENSMUST00000173369 Map2P20357 1828 aa11.08□□□□□ -0.64
Trim39-205ENSMUST00000173369 Fnbp4Q6ZQ03 1031 aa11.07□□□□□ -0.64
Trim39-205ENSMUST00000173369 Ubr1O70481 1757 aa11.07□□□□□ -0.64
Trim39-205ENSMUST00000173369 Slc4a2P13808 1237 aaKnown RBP11.07□□□□□ -0.64
Trim39-205ENSMUST00000173369 Pard3Q99NH2 1333 aa11.07□□□□□ -0.64
Trim39-205ENSMUST00000173369 Ppp1r15aP17564 657 aa11.06□□□□□ -0.64
Trim39-205ENSMUST00000173369 Abca15E9PWH4 1668 aa11.06□□□□□ -0.64
Trim39-205ENSMUST00000173369 Tet3Q8BG87 1668 aa11.06□□□□□ -0.64
Trim39-205ENSMUST00000173369 PtprvP70289 1705 aa11.06□□□□□ -0.64
Trim39-205ENSMUST00000173369 Gm21680A0A0G2JGR8 267 aa11.05□□□□□ -0.64
Trim39-205ENSMUST00000173369 Hoxb7P09024 217 aa11.05□□□□□ -0.64
Trim39-205ENSMUST00000173369 TkfcQ8VC30 578 aa11.05□□□□□ -0.64
Trim39-205ENSMUST00000173369 Speer4bQ9D9F7 267 aa11.05□□□□□ -0.64
Trim39-205ENSMUST00000173369 Cabp2Q9JLK4 216 aa11.05□□□□□ -0.64
Trim39-205ENSMUST00000173369 Col15a1O35206 1367 aa11.05□□□□□ -0.64
Trim39-205ENSMUST00000173369 Kiaa1107Q80TK0 1369 aa11.05□□□□□ -0.64
Trim39-205ENSMUST00000173369 Scaf1Q5U4C3 1256 aaKnown RBP11.05□□□□□ -0.64
Trim39-205ENSMUST00000173369 Cc2d1aQ8K1A6 943 aa11.05□□□□□ -0.64
Trim39-205ENSMUST00000173369 TnikP83510 1323 aa11.05□□□□□ -0.64
Trim39-205ENSMUST00000173369 Zscan21Q07231 555 aa11.04□□□□□ -0.64
Trim39-205ENSMUST00000173369 Bsdc1Q80Y55 427 aa11.04□□□□□ -0.64
Trim39-205ENSMUST00000173369 Slx1bQ8BX32 270 aa11.04□□□□□ -0.64
Trim39-205ENSMUST00000173369 Trap1aP19473 224 aa11.04□□□□□ -0.64
Trim39-205ENSMUST00000173369 Larp1Q6ZQ58 1072 aaKnown RBP11.04□□□□□ -0.64
Trim39-205ENSMUST00000173369 CrbnQ8C7D2 445 aa11.03□□□□□ -0.64
Trim39-205ENSMUST00000173369 Neurod2Q62414 383 aa11.03□□□□□ -0.64
Trim39-205ENSMUST00000173369 PnisrA2AJT4 805 aaKnown RBP11.02□□□□□ -0.64
Trim39-205ENSMUST00000173369 Skap1Q3UUV5 355 aa11.02□□□□□ -0.65
Trim39-205ENSMUST00000173369 Zeb2Q9R0G7 1215 aa11.02□□□□□ -0.65
Trim39-205ENSMUST00000173369 Rangap1P46061 589 aaKnown RBP11.02□□□□□ -0.65
Trim39-205ENSMUST00000173369 Ppp1r37Q8BKR5 712 aa11.02□□□□□ -0.65
Trim39-205ENSMUST00000173369 Pibf1E9Q6K3 756 aa11.01□□□□□ -0.65
Trim39-205ENSMUST00000173369 Golga2Q921M4 999 aa11.01□□□□□ -0.65
Trim39-205ENSMUST00000173369 Bcl9lQ67FY2 1494 aa11.01□□□□□ -0.65
Trim39-205ENSMUST00000173369 Marf1Q8BJ34 1730 aaKnown RBP11.01□□□□□ -0.65
Trim39-205ENSMUST00000173369 Pm20d1Q8C165 503 aa11.01□□□□□ -0.65
Trim39-205ENSMUST00000173369 Styxl1Q9DAR2 321 aa11.01□□□□□ -0.65
Trim39-205ENSMUST00000173369 Ddb1Q3U1J4 1140 aaKnown RBP11□□□□□ -0.65
Trim39-205ENSMUST00000173369 ThemisQ8BGW0 636 aa11□□□□□ -0.65
Trim39-205ENSMUST00000173369 Stk31Q99MW1 1018 aa11□□□□□ -0.65
Trim39-205ENSMUST00000173369 Mapk8ip3Q9ESN9 1337 aa10.99□□□□□ -0.65
Trim39-205ENSMUST00000173369 GapdhsQ64467 440 aa10.99□□□□□ -0.65
Trim39-205ENSMUST00000173369 Siglec1Q62230 1695 aa10.99□□□□□ -0.65
Trim39-205ENSMUST00000173369 UtrnE9Q6R7 3430 aa10.99□□□□□ -0.65
Trim39-205ENSMUST00000173369 1700019A02RikA0A087WPV9 146 aa10.99□□□□□ -0.65
Trim39-205ENSMUST00000173369 Kiaa0319Q5SZV5 1081 aa10.99□□□□□ -0.65
Trim39-205ENSMUST00000173369 Akap11E9Q777 1895 aa10.99□□□□□ -0.65
Trim39-205ENSMUST00000173369 Plekhd1B2RPU2 505 aa10.98□□□□□ -0.65
Retrieved 100 of 22,080 RNA–protein pairs in 69.7 ms