Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm25239-201ENSMUST00000174915 86 ntBASIC52.09■■■■■ 5.93
Ddb1Q3U1J4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC48.45■■■■■ 5.35
Ddb1Q3U1J4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC47.71■■■■■ 5.23
Ddb1Q3U1J4 Gm24109-201ENSMUST00000175489 103 ntBASIC45.43■■■■■ 4.86
Ddb1Q3U1J4 Gm15042-201ENSMUST00000120212 883 ntBASIC44.95■■■■■ 4.79
Ddb1Q3U1J4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC44.03■■■■■ 4.64
Ddb1Q3U1J4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC43.97■■■■■ 4.63
Ddb1Q3U1J4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC43.86■■■■■ 4.61
Ddb1Q3U1J4 Gm15045-201ENSMUST00000117359 883 ntBASIC43.85■■■■■ 4.61
Ddb1Q3U1J4 Gm23366-201ENSMUST00000175022 89 ntBASIC43.43■■■■■ 4.54
Ddb1Q3U1J4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC43.35■■■■■ 4.53
Ddb1Q3U1J4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC42.59■■■■■ 4.41
Ddb1Q3U1J4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC42.2■■■■■ 4.35
Ddb1Q3U1J4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC42.15■■■■■ 4.34
Ddb1Q3U1J4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC42.11■■■■■ 4.33
Ddb1Q3U1J4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC42.01■■■■■ 4.32
Ddb1Q3U1J4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC41.9■■■■■ 4.3
Ddb1Q3U1J4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC41.64■■■■■ 4.26
Ddb1Q3U1J4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC41.49■■■■■ 4.23
Ddb1Q3U1J4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC41.43■■■■■ 4.22
Ddb1Q3U1J4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC41.36■■■■■ 4.21
Ddb1Q3U1J4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC41.34■■■■■ 4.21
Ddb1Q3U1J4 Gm25238-201ENSMUST00000174914 89 ntBASIC41.31■■■■■ 4.2
Ddb1Q3U1J4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC41.14■■■■■ 4.18
Ddb1Q3U1J4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC40.72■■■■■ 4.11
Ddb1Q3U1J4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC40.47■■■■■ 4.07
Ddb1Q3U1J4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC40.41■■■■■ 4.06
Ddb1Q3U1J4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC40.33■■■■■ 4.05
Ddb1Q3U1J4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC40.24■■■■■ 4.03
Ddb1Q3U1J4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC40.19■■■■■ 4.02
Ddb1Q3U1J4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC40.18■■■■■ 4.02
Ddb1Q3U1J4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC40.16■■■■■ 4.02
Ddb1Q3U1J4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC39.93■■■■□ 3.98
Ddb1Q3U1J4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC39.92■■■■□ 3.98
Ddb1Q3U1J4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC39.91■■■■□ 3.98
Ddb1Q3U1J4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
Ddb1Q3U1J4 Gm25262-201ENSMUST00000174934 133 ntBASIC39.87■■■■□ 3.97
Ddb1Q3U1J4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC39.84■■■■□ 3.97
Ddb1Q3U1J4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC39.66■■■■□ 3.94
Ddb1Q3U1J4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC39.56■■■■□ 3.92
Ddb1Q3U1J4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC39.5■■■■□ 3.91
Ddb1Q3U1J4 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC39.32■■■■□ 3.89
Ddb1Q3U1J4 Gm27325-201ENSMUST00000175467 74 ntBASIC39.28■■■■□ 3.88
Ddb1Q3U1J4 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC39.21■■■■□ 3.87
Ddb1Q3U1J4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC39.16■■■■□ 3.86
Ddb1Q3U1J4 Gm26115-201ENSMUST00000175605 87 ntBASIC39.13■■■■□ 3.85
Ddb1Q3U1J4 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC39.08■■■■□ 3.85
Ddb1Q3U1J4 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC39.05■■■■□ 3.84
Ddb1Q3U1J4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC39■■■■□ 3.83
Ddb1Q3U1J4 Rab21-202ENSMUST00000218831 843 ntBASIC38.96■■■■□ 3.83
Ddb1Q3U1J4 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC38.93■■■■□ 3.82
Ddb1Q3U1J4 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC38.84■■■■□ 3.81
Ddb1Q3U1J4 Gm8109-201ENSMUST00000194076 746 ntBASIC38.82■■■■□ 3.8
Ddb1Q3U1J4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
Ddb1Q3U1J4 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC38.75■■■■□ 3.79
Ddb1Q3U1J4 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC38.74■■■■□ 3.79
Ddb1Q3U1J4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC38.73■■■■□ 3.79
Ddb1Q3U1J4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC38.72■■■■□ 3.79
Ddb1Q3U1J4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC38.63■■■■□ 3.77
Ddb1Q3U1J4 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC38.59■■■■□ 3.77
Ddb1Q3U1J4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC38.56■■■■□ 3.76
Ddb1Q3U1J4 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC38.44■■■■□ 3.74
Ddb1Q3U1J4 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC38.43■■■■□ 3.74
Ddb1Q3U1J4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC38.32■■■■□ 3.73
Ddb1Q3U1J4 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC38.24■■■■□ 3.71
Ddb1Q3U1J4 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
Ddb1Q3U1J4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC38.03■■■■□ 3.68
Ddb1Q3U1J4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC37.99■■■■□ 3.67
Ddb1Q3U1J4 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC37.92■■■■□ 3.66
Ddb1Q3U1J4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC37.92■■■■□ 3.66
Ddb1Q3U1J4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
Ddb1Q3U1J4 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC37.87■■■■□ 3.65
Ddb1Q3U1J4 Psd-208ENSMUST00000224556 2034 ntBASIC37.85■■■■□ 3.65
Ddb1Q3U1J4 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC37.84■■■■□ 3.65
Ddb1Q3U1J4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC37.84■■■■□ 3.65
Ddb1Q3U1J4 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC37.83■■■■□ 3.65
Ddb1Q3U1J4 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC37.79■■■■□ 3.64
Ddb1Q3U1J4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC37.74■■■■□ 3.63
Ddb1Q3U1J4 Gm17082-201ENSMUST00000166043 1091 ntBASIC37.71■■■■□ 3.63
Ddb1Q3U1J4 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC37.67■■■■□ 3.62
Ddb1Q3U1J4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC37.64■■■■□ 3.62
Ddb1Q3U1J4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC37.56■■■■□ 3.6
Ddb1Q3U1J4 Gm24804-201ENSMUST00000174982 85 ntBASIC37.52■■■■□ 3.6
Ddb1Q3U1J4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC37.4■■■■□ 3.58
Ddb1Q3U1J4 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC37.38■■■■□ 3.57
Ddb1Q3U1J4 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC37.37■■■■□ 3.57
Ddb1Q3U1J4 Gm27322-201ENSMUST00000184007 104 ntBASIC37.32■■■■□ 3.56
Ddb1Q3U1J4 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC37.32■■■■□ 3.56
Ddb1Q3U1J4 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC37.29■■■■□ 3.56
Ddb1Q3U1J4 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC37.26■■■■□ 3.56
Ddb1Q3U1J4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC37.26■■■■□ 3.55
Ddb1Q3U1J4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC37.18■■■■□ 3.54
Ddb1Q3U1J4 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC37.17■■■■□ 3.54
Ddb1Q3U1J4 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC37.16■■■■□ 3.54
Ddb1Q3U1J4 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC37.15■■■■□ 3.54
Ddb1Q3U1J4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC37.13■■■■□ 3.53
Ddb1Q3U1J4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC37.07■■■■□ 3.52
Ddb1Q3U1J4 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC37.05■■■■□ 3.52
Ddb1Q3U1J4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC37.03■■■■□ 3.52
Ddb1Q3U1J4 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC37.03■■■■□ 3.52
Retrieved 100 of 76,532 protein–RNA pairs in 12.2 ms