RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 NischQ80TM9 1593 aa17.92■□□□□ 0.46
Trim39-205ENSMUST00000173369 Gm35339A0A140LHH9 1649 aa17.74■□□□□ 0.43
Trim39-205ENSMUST00000173369 Abcc9P70170 1546 aa17.26■□□□□ 0.35
Trim39-205ENSMUST00000173369 Abcc8B2RUS7 1588 aa17.21■□□□□ 0.35
Trim39-205ENSMUST00000173369 ScribQ80U72 1612 aa16.52■□□□□ 0.23
Trim39-205ENSMUST00000173369 Rhox8Q6VSS7 320 aa16.15■□□□□ 0.18
Trim39-205ENSMUST00000173369 Kdm5dQ62240 1548 aa16.05■□□□□ 0.16
Trim39-205ENSMUST00000173369 NacadQ5SWP3 1504 aa15.96■□□□□ 0.15
Trim39-205ENSMUST00000173369 Dcaf1Q80TR8 1506 aa15.67■□□□□ 0.1
Trim39-205ENSMUST00000173369 Sycp2Q9CUU3 1500 aa15.65■□□□□ 0.1
Trim39-205ENSMUST00000173369 Rb1cc1Q9ESK9 1588 aa15.64■□□□□ 0.09
Trim39-205ENSMUST00000173369 BicraF8VPZ9 1578 aa15.46■□□□□ 0.07
Trim39-205ENSMUST00000173369 Zcchc6Q5BLK4 1491 aaKnown RBP15.38■□□□□ 0.05
Trim39-205ENSMUST00000173369 Baz1aO88379 1555 aa15.35■□□□□ 0.05
Trim39-205ENSMUST00000173369 Dnajc5bQ9CQ94 199 aa15.15■□□□□ 0.02
Trim39-205ENSMUST00000173369 Ccdc136Q3TVA9 1136 aa15.12■□□□□ 0.01
Trim39-205ENSMUST00000173369 Crybg2B7ZCC2 1516 aa15.08■□□□□ 0
Trim39-205ENSMUST00000173369 Ccdc180J3QNE4 1664 aa15.02■□□□□ -0
Trim39-205ENSMUST00000173369 Cecr2E9Q2Z1 1453 aa15.02□□□□□ -0.01
Trim39-205ENSMUST00000173369 Pds5bQ4VA53 1446 aaKnown RBP14.94□□□□□ -0.02
Trim39-205ENSMUST00000173369 Smarca2Q6DIC0 1577 aa14.92□□□□□ -0.02
Trim39-205ENSMUST00000173369 Atad2bE9Q166 1460 aaKnown RBP14.85□□□□□ -0.03
Trim39-205ENSMUST00000173369 Smarca4Q3TKT4 1613 aaKnown RBP14.79□□□□□ -0.04
Trim39-205ENSMUST00000173369 Chic1Q8CBW7 227 aa14.77□□□□□ -0.05
Trim39-205ENSMUST00000173369 Rtl1Q7M732 1744 aa14.73□□□□□ -0.05
Trim39-205ENSMUST00000173369 Iqgap2Q3UQ44 1575 aa14.73□□□□□ -0.05
Trim39-205ENSMUST00000173369 Ube2uB1AUC4 352 aa14.71□□□□□ -0.05
Trim39-205ENSMUST00000173369 Esf1Q3V1V3 845 aaKnown RBP14.69□□□□□ -0.06
Trim39-205ENSMUST00000173369 Thoc2B1AZI6 1594 aaKnown RBP14.68□□□□□ -0.06
Trim39-205ENSMUST00000173369 Ercc6F8VPZ5 1481 aa14.68□□□□□ -0.06
Trim39-205ENSMUST00000173369 Cc2d2aQ8CFW7 1633 aa14.61□□□□□ -0.07
Trim39-205ENSMUST00000173369 Synj1Q8CHC4 1574 aa14.61□□□□□ -0.07
Trim39-205ENSMUST00000173369 CftrP26361 1476 aa14.6□□□□□ -0.07
Trim39-205ENSMUST00000173369 Frmpd1A2AKB4 1549 aa14.6□□□□□ -0.07
Trim39-205ENSMUST00000173369 Brd4Q9ESU6 1400 aaKnown RBP14.59□□□□□ -0.07
Trim39-205ENSMUST00000173369 Trim41Q5NCC3 630 aa14.57□□□□□ -0.08
Trim39-205ENSMUST00000173369 Ubl4bQ9CQ84 188 aa14.54□□□□□ -0.08
Trim39-205ENSMUST00000173369 Wdr62Q3U3T8 1523 aa14.53□□□□□ -0.08
Trim39-205ENSMUST00000173369 Cngb1E1AZ71 1325 aa14.49□□□□□ -0.09
Trim39-205ENSMUST00000173369 Phldb1Q6PDH0 1371 aaKnown RBP14.45□□□□□ -0.1
Trim39-205ENSMUST00000173369 Cttnbp2B9EJA2 1648 aa14.45□□□□□ -0.1
Trim39-205ENSMUST00000173369 Fam135aQ6NS59 1506 aa14.37□□□□□ -0.11
Trim39-205ENSMUST00000173369 Il27Q8K3I6 234 aa14.31□□□□□ -0.12
Trim39-205ENSMUST00000173369 Unc13aQ4KUS2 1712 aa14.3□□□□□ -0.12
Trim39-205ENSMUST00000173369 Kif15Q6P9L6 1387 aa14.28□□□□□ -0.12
Trim39-205ENSMUST00000173369 Rsf1E9PWW9 1441 aaKnown RBP14.21□□□□□ -0.13
Trim39-205ENSMUST00000173369 Cux2P70298 1426 aa14.19□□□□□ -0.14
Trim39-205ENSMUST00000173369 Mrc2Q64449 1479 aa14.17□□□□□ -0.14
Trim39-205ENSMUST00000173369 Golga3P55937 1487 aa14.17□□□□□ -0.14
Trim39-205ENSMUST00000173369 Npm1Q61937 292 aaKnown RBP14.14□□□□□ -0.15
Trim39-205ENSMUST00000173369 Ccdc88bQ4QRL3 1481 aa14.02□□□□□ -0.17
Trim39-205ENSMUST00000173369 Top2bQ64511 1612 aa14.01□□□□□ -0.17
Trim39-205ENSMUST00000173369 Lamc3Q9R0B6 1581 aa14□□□□□ -0.17
Trim39-205ENSMUST00000173369 Gab3Q8BSM5 595 aa13.94□□□□□ -0.18
Trim39-205ENSMUST00000173369 Kif21aQ9QXL2 1672 aa13.93□□□□□ -0.18
Trim39-205ENSMUST00000173369 Cep164Q5DU05 1446 aa13.93□□□□□ -0.18
Trim39-205ENSMUST00000173369 Ccdc18Q640L5 1455 aa13.92□□□□□ -0.18
Trim39-205ENSMUST00000173369 Fmn1Q05860 1466 aa13.91□□□□□ -0.18
Trim39-205ENSMUST00000173369 Baz1bQ9Z277 1479 aa13.91□□□□□ -0.18
Trim39-205ENSMUST00000173369 Dhx29Q6PGC1 1365 aaKnown RBP13.9□□□□□ -0.18
Trim39-205ENSMUST00000173369 LrpprcQ6PB66 1392 aaKnown RBP13.87□□□□□ -0.19
Trim39-205ENSMUST00000173369 Camsap1A2AHC3 1581 aa13.85□□□□□ -0.19
Trim39-205ENSMUST00000173369 TnnQ80Z71 1560 aa13.85□□□□□ -0.19
Trim39-205ENSMUST00000173369 Lrriq1Q0P5X1 1673 aa13.84□□□□□ -0.19
Trim39-205ENSMUST00000173369 Plb1Q3TTY0 1478 aa13.81□□□□□ -0.2
Trim39-205ENSMUST00000173369 Urb2E9Q7L1 1524 aaKnown RBP13.8□□□□□ -0.2
Trim39-205ENSMUST00000173369 Zeb1Q64318 1117 aa13.8□□□□□ -0.2
Trim39-205ENSMUST00000173369 Mapk8ip2Q9ERE9 830 aa13.8□□□□□ -0.2
Trim39-205ENSMUST00000173369 Npm2Q80W85 207 aa13.77□□□□□ -0.2
Trim39-205ENSMUST00000173369 PogzQ8BZH4 1409 aaKnown RBP13.75□□□□□ -0.21
Trim39-205ENSMUST00000173369 Duox2A2AQ99 1517 aa13.74□□□□□ -0.21
Trim39-205ENSMUST00000173369 Grin2bQ01097 1482 aa13.72□□□□□ -0.21
Trim39-205ENSMUST00000173369 PtprkP35822 1457 aa13.71□□□□□ -0.22
Trim39-205ENSMUST00000173369 Crocc2F6XLV1 1638 aa13.7□□□□□ -0.22
Trim39-205ENSMUST00000173369 HrcG5E8J6 738 aa13.69□□□□□ -0.22
Trim39-205ENSMUST00000173369 Top2aQ01320 1528 aaKnown RBP13.68□□□□□ -0.22
Trim39-205ENSMUST00000173369 Rad54l2Q99NG0 1466 aa13.66□□□□□ -0.22
Trim39-205ENSMUST00000173369 Myt1lP97500 1187 aa13.66□□□□□ -0.22
Trim39-205ENSMUST00000173369 Kcna4Q61423 654 aa13.64□□□□□ -0.23
Trim39-205ENSMUST00000173369 Samd9lQ69Z37 1561 aa13.62□□□□□ -0.23
Trim39-205ENSMUST00000173369 Pelp1Q9DBD5 1123 aaKnown RBP13.61□□□□□ -0.23
Trim39-205ENSMUST00000173369 Efcab5A0JP43 1406 aa13.58□□□□□ -0.24
Trim39-205ENSMUST00000173369 Disp1Q3TDN0 1521 aa13.57□□□□□ -0.24
Trim39-205ENSMUST00000173369 Plppr3Q7TPB0 716 aa13.57□□□□□ -0.24
Trim39-205ENSMUST00000173369 Shroom4Q1W617 1475 aa13.54□□□□□ -0.24
Trim39-205ENSMUST00000173369 Ift140E9PY46 1464 aa13.54□□□□□ -0.24
Trim39-205ENSMUST00000173369 Rapgef2Q8CHG7 1496 aa13.54□□□□□ -0.24
Trim39-205ENSMUST00000173369 Eif4g3Q80XI3 1579 aaKnown RBP13.54□□□□□ -0.24
Trim39-205ENSMUST00000173369 NrkQ9R0G8 1455 aa13.53□□□□□ -0.24
Trim39-205ENSMUST00000173369 Grin2aP35436 1464 aa13.48□□□□□ -0.25
Trim39-205ENSMUST00000173369 Magi3Q9EQJ9 1476 aa13.46□□□□□ -0.26
Trim39-205ENSMUST00000173369 Rusc2Q80U22 1514 aa13.45□□□□□ -0.26
Trim39-205ENSMUST00000173369 Setd1bQ8CFT2 1985 aa13.44□□□□□ -0.26
Trim39-205ENSMUST00000173369 Ehmt2Q9Z148 1263 aaKnown RBP13.44□□□□□ -0.26
Trim39-205ENSMUST00000173369 Nup160Q9Z0W3 1402 aaKnown RBP13.43□□□□□ -0.26
Trim39-205ENSMUST00000173369 Arhgap27A2AB59 869 aa13.43□□□□□ -0.26
Trim39-205ENSMUST00000173369 Pabpn1Q8CCS6 302 aaKnown RBP13.43□□□□□ -0.26
Trim39-205ENSMUST00000173369 Pla2r1Q62028 1487 aa13.41□□□□□ -0.26
Trim39-205ENSMUST00000173369 AknaQ80VW7 1404 aa13.41□□□□□ -0.26
Trim39-205ENSMUST00000173369 Phf23Q8BSN5 401 aa13.41□□□□□ -0.26
Retrieved 100 of 22,080 RNA–protein pairs in 126.7 ms