RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	WTM2	Q12206	467 aa		5.86	□□□□□ -1.47
UBI4	YLL039C	PHM7	Q12252	991 aa		5.86	□□□□□ -1.47
UBI4	YLL039C	ISF1	P32488	338 aa		5.85	□□□□□ -1.47
UBI4	YLL039C	EMP47	P43555	445 aa		5.85	□□□□□ -1.47
UBI4	YLL039C	ISR1	Q06098	443 aa	Known RBP	5.85	□□□□□ -1.47
UBI4	YLL039C	RPP2B	P02400	110 aa	Known RBP	5.84	□□□□□ -1.47
UBI4	YLL039C	SPT2	P06843	333 aa	Predicted RBP	5.84	□□□□□ -1.47
UBI4	YLL039C	SLA1	P32790	1244 aa		5.84	□□□□□ -1.47
UBI4	YLL039C	SSN3	P39073	555 aa		5.84	□□□□□ -1.47
UBI4	YLL039C	YFL066C	P43538	392 aa		5.84	□□□□□ -1.47
UBI4	YLL039C	LSB3	P43603	459 aa	Known RBP	5.84	□□□□□ -1.47
UBI4	YLL039C	MEC3	Q02574	474 aa		5.84	□□□□□ -1.47
UBI4	YLL039C	MCM16	Q12262	181 aa		5.84	□□□□□ -1.47
UBI4	YLL039C	SIR4	P11978	1358 aa		5.83	□□□□□ -1.48
UBI4	YLL039C	RPO41	P13433	1351 aa	Known RBP	5.83	□□□□□ -1.48
UBI4	YLL039C	COB	P00163	385 aa		5.83	□□□□□ -1.48
UBI4	YLL039C	UBP1	P25037	809 aa		5.83	□□□□□ -1.48
UBI4	YLL039C	NPR2	P39923	615 aa		5.83	□□□□□ -1.48
UBI4	YLL039C	MSN5	P52918	1224 aa		5.83	□□□□□ -1.48
UBI4	YLL039C	TY1A-DR3	Q12441	440 aa		5.83	□□□□□ -1.48
UBI4	YLL039C	SNF2	P22082	1703 aa		5.82	□□□□□ -1.48
UBI4	YLL039C	EDE1	P34216	1381 aa		5.82	□□□□□ -1.48
UBI4	YLL039C	YDJ1	P25491	409 aa	Known RBP	5.82	□□□□□ -1.48
UBI4	YLL039C	SPT5	P27692	1063 aa	Known RBP	5.82	□□□□□ -1.48
UBI4	YLL039C	YKR075C	P36155	307 aa		5.82	□□□□□ -1.48
UBI4	YLL039C	HAL5	P38970	855 aa	Known RBP	5.82	□□□□□ -1.48
UBI4	YLL039C	CEM1	P39525	442 aa		5.82	□□□□□ -1.48
UBI4	YLL039C	YJL181W	P46987	611 aa		5.82	□□□□□ -1.48
UBI4	YLL039C	UBP15	P50101	1230 aa		5.82	□□□□□ -1.48
UBI4	YLL039C	NSG2	P53898	299 aa		5.82	□□□□□ -1.48
UBI4	YLL039C	ADE16	P54113	591 aa	Known RBP	5.82	□□□□□ -1.48
UBI4	YLL039C	YRF1-4	O13559	1382 aa		5.81	□□□□□ -1.48
UBI4	YLL039C	PRP40	P33203	583 aa	Known RBP	5.81	□□□□□ -1.48
UBI4	YLL039C	PAP2	P53632	584 aa	Known RBP	5.81	□□□□□ -1.48
UBI4	YLL039C	THI72	Q08579	599 aa		5.81	□□□□□ -1.48
UBI4	YLL039C	SPT7	P35177	1332 aa		5.8	□□□□□ -1.48
UBI4	YLL039C	AI1	P03875	834 aa		5.8	□□□□□ -1.48
UBI4	YLL039C	DAT1	P13483	248 aa	Known RBP	5.8	□□□□□ -1.48
UBI4	YLL039C	DIT1	P21623	536 aa		5.8	□□□□□ -1.48
UBI4	YLL039C	UTR2	P32623	467 aa		5.8	□□□□□ -1.48
UBI4	YLL039C	YBL036C	P38197	257 aa		5.8	□□□□□ -1.48
UBI4	YLL039C	RPN1	P38764	993 aa	Known RBP	5.8	□□□□□ -1.48
UBI4	YLL039C	DSD1	P53095	428 aa		5.8	□□□□□ -1.48
UBI4	YLL039C	HPC2	Q01448	625 aa		5.8	□□□□□ -1.48
UBI4	YLL039C	SYT1	Q06836	1226 aa		5.8	□□□□□ -1.48
UBI4	YLL039C	HSP104	P31539	908 aa	Known RBP	5.79	□□□□□ -1.48
UBI4	YLL039C	AKL1	P38080	1108 aa	Known RBP	5.79	□□□□□ -1.48
UBI4	YLL039C	LYS4	P49367	693 aa	Predicted RBP	5.79	□□□□□ -1.48
UBI4	YLL039C	CTF4	Q01454	927 aa		5.79	□□□□□ -1.48
UBI4	YLL039C	YMR265C	Q03508	461 aa	Known RBP	5.79	□□□□□ -1.48
UBI4	YLL039C	IOC4	Q04213	475 aa		5.79	□□□□□ -1.48
UBI4	YLL039C	INP54	Q08227	384 aa	Known RBP	5.79	□□□□□ -1.48
UBI4	YLL039C	OSM1	P21375	501 aa	Known RBP	5.78	□□□□□ -1.48
UBI4	YLL039C	RRP46	P53256	223 aa	Predicted RBP	5.78	□□□□□ -1.48
UBI4	YLL039C	ATG13	Q06628	738 aa		5.78	□□□□□ -1.48
UBI4	YLL039C	UTP7	P40055	554 aa	Known RBP	5.77	□□□□□ -1.49
UBI4	YLL039C	YDR461C-A	Q2V2P7	80 aa		5.77	□□□□□ -1.49
UBI4	YLL039C	NUP145	P49687	1317 aa		5.76	□□□□□ -1.49
UBI4	YLL039C	RIM15	P43565	1770 aa		5.76	□□□□□ -1.49
UBI4	YLL039C	PKC1	P24583	1151 aa		5.76	□□□□□ -1.49
UBI4	YLL039C	ALD2	P47771	506 aa		5.76	□□□□□ -1.49
UBI4	YLL039C	KRE33	P53914	1056 aa	Known RBP	5.76	□□□□□ -1.49
UBI4	YLL039C	TFB3	Q03290	321 aa		5.76	□□□□□ -1.49
UBI4	YLL039C	AOS1	Q06624	347 aa		5.76	□□□□□ -1.49
UBI4	YLL039C	NTH2	P35172	780 aa		5.75	□□□□□ -1.49
UBI4	YLL039C	UGA2	P38067	497 aa		5.75	□□□□□ -1.49
UBI4	YLL039C	TBS1	P38114	1094 aa		5.75	□□□□□ -1.49
UBI4	YLL039C	CTH1	P47976	325 aa		5.75	□□□□□ -1.49
UBI4	YLL039C	ADE12	P80210	433 aa	Known RBP	5.75	□□□□□ -1.49
UBI4	YLL039C	GRX1	P25373	110 aa	Known RBP	5.74	□□□□□ -1.49
UBI4	YLL039C	BIO2	P32451	375 aa		5.74	□□□□□ -1.49
UBI4	YLL039C	AHP1	P38013	176 aa	Known RBP	5.74	□□□□□ -1.49
UBI4	YLL039C	SOH1	P38633	127 aa		5.74	□□□□□ -1.49
UBI4	YLL039C	SLX8	P40072	274 aa		5.74	□□□□□ -1.49
UBI4	YLL039C	RTR1	P40084	226 aa	Predicted RBP	5.74	□□□□□ -1.49
UBI4	YLL039C	SUM1	P46676	1062 aa		5.74	□□□□□ -1.49
UBI4	YLL039C	CCT8	P47079	568 aa	Known RBP	5.74	□□□□□ -1.49
UBI4	YLL039C	YBP2	P53169	641 aa		5.74	□□□□□ -1.49
UBI4	YLL039C	UTP13	Q05946	817 aa	Known RBP	5.74	□□□□□ -1.49
UBI4	YLL039C	PRD1	P25375	712 aa		5.73	□□□□□ -1.49
UBI4	YLL039C	BRL1	P38770	471 aa		5.73	□□□□□ -1.49
UBI4	YLL039C	SBE2	P42223	864 aa	Known RBP	5.73	□□□□□ -1.49
UBI4	YLL039C	HDA3	Q06623	655 aa		5.73	□□□□□ -1.49
UBI4	YLL039C	SUP45	P12385	437 aa	Known RBP	5.72	□□□□□ -1.49
UBI4	YLL039C	RAD4	P14736	754 aa		5.72	□□□□□ -1.49
UBI4	YLL039C	KCC4	P25389	1037 aa		5.72	□□□□□ -1.49
UBI4	YLL039C	CAB3	P36076	571 aa		5.72	□□□□□ -1.49
UBI4	YLL039C	SHM1	P37292	490 aa	Predicted RBP	5.72	□□□□□ -1.49
UBI4	YLL039C	JJJ2	P46997	583 aa		5.72	□□□□□ -1.49
UBI4	YLL039C	YNL050C	P53952	270 aa		5.72	□□□□□ -1.49
UBI4	YLL039C	IRE1	P32361	1115 aa		5.71	□□□□□ -1.5
UBI4	YLL039C	ALA1	P40825	983 aa	Known RBP	5.71	□□□□□ -1.5
UBI4	YLL039C	ATG3	P40344	310 aa		5.7	□□□□□ -1.5
UBI4	YLL039C	YPP1	P46951	817 aa		5.7	□□□□□ -1.5
UBI4	YLL039C	MPP10	P47083	593 aa	Known RBP	5.7	□□□□□ -1.5
UBI4	YLL039C	ALD3	P54114	506 aa		5.7	□□□□□ -1.5
UBI4	YLL039C	THI22	Q06490	572 aa		5.7	□□□□□ -1.5
UBI4	YLL039C	BUG1	Q12191	341 aa		5.7	□□□□□ -1.5
UBI4	YLL039C	YPR053C	Q6Q5F3	151 aa		5.7	□□□□□ -1.5
UBI4	YLL039C	ENO2	P00925	437 aa	Known RBP	5.69	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms