RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W GAL11P19659 1081 aa1.62□□□□□ -2.15
CDC39YCR093W ISC10P32645 267 aa1.62□□□□□ -2.15
CDC39YCR093W YML083CQ04526 418 aa1.62□□□□□ -2.15
CDC39YCR093W HRK1Q08732 759 aaKnown RBP1.62□□□□□ -2.15
CDC39YCR093W STB3Q12427 513 aa1.62□□□□□ -2.15
CDC39YCR093W TRK1P12685 1235 aa1.62□□□□□ -2.15
CDC39YCR093W DIT1P21623 536 aa1.62□□□□□ -2.15
CDC39YCR093W GLY1P37303 387 aaKnown RBP1.62□□□□□ -2.15
CDC39YCR093W YBR197CP38306 217 aa1.62□□□□□ -2.15
CDC39YCR093W PSY2P40164 858 aa1.62□□□□□ -2.15
CDC39YCR093W NTA1P40354 457 aa1.62□□□□□ -2.15
CDC39YCR093W NAN1Q02931 896 aaKnown RBP1.62□□□□□ -2.15
CDC39YCR093W RKM2Q03942 479 aa1.62□□□□□ -2.15
CDC39YCR093W SRP40P32583 406 aaPredicted RBP1.62□□□□□ -2.15
CDC39YCR093W PIN4P34217 668 aaKnown RBP RIP-Chip data1.62□□□□□ -2.15not detected
CDC39YCR093W NOP2P40991 618 aaKnown RBP1.62□□□□□ -2.15
CDC39YCR093W VPS30Q02948 557 aa1.62□□□□□ -2.15
CDC39YCR093W MDS3P53094 1487 aa1.62□□□□□ -2.15
CDC39YCR093W COQ4O13525 335 aa1.61□□□□□ -2.15
CDC39YCR093W DPB3P27344 201 aa1.61□□□□□ -2.15
CDC39YCR093W PPG1P32838 368 aa1.61□□□□□ -2.15
CDC39YCR093W APL6P46682 809 aa1.61□□□□□ -2.15
CDC39YCR093W GCV1P48015 400 aa1.61□□□□□ -2.15
CDC39YCR093W ERP6P53198 216 aa1.61□□□□□ -2.15
CDC39YCR093W ENV11P53246 860 aa1.61□□□□□ -2.15
CDC39YCR093W OYE2Q03558 400 aaKnown RBP1.61□□□□□ -2.15
CDC39YCR093W YCS4Q06156 1176 aa1.61□□□□□ -2.15
CDC39YCR093W OPT2Q06593 877 aa1.61□□□□□ -2.15
CDC39YCR093W YJR107WP47145 328 aa1.61□□□□□ -2.15
CDC39YCR093W NIT3P49954 291 aa1.61□□□□□ -2.15
CDC39YCR093W RSC4Q02206 625 aa1.61□□□□□ -2.15
CDC39YCR093W SRP1Q02821 542 aaKnown RBP1.61□□□□□ -2.15
CDC39YCR093W RDS2P19541 446 aaKnown RBP1.61□□□□□ -2.15
CDC39YCR093W VMA4P22203 233 aaKnown RBP1.61□□□□□ -2.15
CDC39YCR093W RSC6P25632 483 aa1.61□□□□□ -2.15
CDC39YCR093W FET4P40988 552 aa1.61□□□□□ -2.15
CDC39YCR093W JSN1P47135 1091 aaKnown RBP RIP-Chip data1.61□□□□□ -2.15not detected
CDC39YCR093W NUT2Q06213 157 aa1.61□□□□□ -2.15
CDC39YCR093W MCM5P29496 775 aaKnown RBP1.61□□□□□ -2.15
CDC39YCR093W MLF3P32047 452 aa1.61□□□□□ -2.15
CDC39YCR093W YER156CP40093 338 aaKnown RBP1.61□□□□□ -2.15
CDC39YCR093W YJR115WP47152 169 aa1.61□□□□□ -2.15
CDC39YCR093W RSB1Q08417 382 aa1.61□□□□□ -2.15
CDC39YCR093W YOL098CQ12496 1037 aa1.61□□□□□ -2.15
CDC39YCR093W BOI1P38041 980 aaKnown RBP1.61□□□□□ -2.15
CDC39YCR093W OSH7P38755 437 aa1.61□□□□□ -2.15
CDC39YCR093W HNT2P49775 206 aa1.61□□□□□ -2.15
CDC39YCR093W FAL1Q12099 399 aaKnown RBP1.61□□□□□ -2.15
CDC39YCR093W SSN3P39073 555 aa1.6□□□□□ -2.15
CDC39YCR093W RKM4Q12504 494 aa1.6□□□□□ -2.15
CDC39YCR093W SCP160P06105 1222 aaKnown RBP RIP-Chip data1.6□□□□□ -2.15 RIP-Chip
CDC39YCR093W SEC2P17065 759 aa1.6□□□□□ -2.15
CDC39YCR093W HSP60P19882 572 aaKnown RBP1.6□□□□□ -2.15
CDC39YCR093W MRP8P35719 219 aa1.6□□□□□ -2.15
CDC39YCR093W HIR3P47171 1648 aa1.6□□□□□ -2.15
CDC39YCR093W MOD5P07884 428 aa1.6□□□□□ -2.15
CDC39YCR093W SFP1P32432 683 aa1.6□□□□□ -2.15
CDC39YCR093W NNK1P36003 928 aa1.6□□□□□ -2.15
CDC39YCR093W FAF1P40546 346 aaPredicted RBP1.6□□□□□ -2.15
CDC39YCR093W HUL4P40985 892 aa1.6□□□□□ -2.15
CDC39YCR093W YGR035CP53222 116 aa1.6□□□□□ -2.15
CDC39YCR093W UBP3Q01477 912 aaKnown RBP RIP-Chip data1.6□□□□□ -2.15 RIP-Chip
CDC39YCR093W SEN54Q02825 467 aaPredicted RBP1.6□□□□□ -2.15
CDC39YCR093W SEC8P32855 1065 aa1.6□□□□□ -2.15
CDC39YCR093W NMD2P38798 1089 aaKnown RBP1.6□□□□□ -2.15
CDC39YCR093W PEX13P80667 386 aa1.6□□□□□ -2.15
CDC39YCR093W RTT10Q08924 1013 aa1.6□□□□□ -2.15
CDC39YCR093W YPL277CQ08989 487 aa1.6□□□□□ -2.15
CDC39YCR093W UTP22P53254 1237 aaPredicted RBP1.6□□□□□ -2.15
CDC39YCR093W KRE33P53914 1056 aaKnown RBP1.6□□□□□ -2.15
CDC39YCR093W JIP5Q06214 492 aaPredicted RBP1.6□□□□□ -2.15
CDC39YCR093W PIN2Q12057 282 aa1.6□□□□□ -2.15
CDC39YCR093W ATG2P53855 1592 aa1.6□□□□□ -2.15
CDC39YCR093W MSH4P40965 878 aaPredicted RBP1.59□□□□□ -2.15
CDC39YCR093W YAF9P53930 226 aa1.59□□□□□ -2.15
CDC39YCR093W CUS1Q02554 436 aaPredicted RBP1.59□□□□□ -2.15
CDC39YCR093W YDL124WQ07551 312 aaKnown RBP1.59□□□□□ -2.15
CDC39YCR093W YTA7P40340 1379 aa1.59□□□□□ -2.15
CDC39YCR093W ADE8P04161 214 aa1.59□□□□□ -2.15
CDC39YCR093W RAD2P07276 1031 aa1.59□□□□□ -2.15
CDC39YCR093W COQ2P32378 372 aa1.59□□□□□ -2.15
CDC39YCR093W NGG1P32494 702 aa1.59□□□□□ -2.15
CDC39YCR093W MAE1P36013 669 aaKnown RBP1.59□□□□□ -2.15
CDC39YCR093W ALD2P47771 506 aa1.59□□□□□ -2.15
CDC39YCR093W YGR130CP53278 816 aa1.59□□□□□ -2.15
CDC39YCR093W LEU1P07264 779 aaKnown RBP1.59□□□□□ -2.15
CDC39YCR093W SBA1P28707 216 aaKnown RBP1.59□□□□□ -2.15
CDC39YCR093W YNR014WP53719 212 aa1.59□□□□□ -2.15
CDC39YCR093W ALG14P38242 237 aa1.59□□□□□ -2.16
CDC39YCR093W HAL5P38970 855 aaKnown RBP1.59□□□□□ -2.16
CDC39YCR093W ADI1Q03677 179 aa1.59□□□□□ -2.16
CDC39YCR093W SPP382Q06411 708 aaPredicted RBP1.59□□□□□ -2.16
CDC39YCR093W TIF6Q12522 245 aaKnown RBP1.59□□□□□ -2.16
CDC39YCR093W TY1B-BRQ12193 1756 aa1.59□□□□□ -2.16
CDC39YCR093W TY1B-GR3Q12316 1755 aa1.59□□□□□ -2.16
CDC39YCR093W TY1B-ORQ92393 1755 aa1.59□□□□□ -2.16
CDC39YCR093W FUS1P11710 512 aa1.59□□□□□ -2.16
CDC39YCR093W GAR1P28007 205 aaKnown RBP1.59□□□□□ -2.16
CDC39YCR093W HXT5P38695 592 aa1.59□□□□□ -2.16
CDC39YCR093W RRT14P40470 206 aa1.59□□□□□ -2.16
Retrieved 100 of 5,963 RNA–protein pairs in 20.9 ms