RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 IDI1Q13907 227 aa9.6□□□□□ -0.87
TCF4-249ENST00000625716 TXNDC2Q86VQ3 553 aa9.6□□□□□ -0.87
TCF4-249ENST00000625716 ZNF454Q8N9F8 522 aa9.6□□□□□ -0.87
TCF4-249ENST00000625716 NPHP4O75161 1426 aaPredicted RBP9.59□□□□□ -0.87
TCF4-249ENST00000625716 CFAP65Q6ZU64 1925 aaKnown RBP9.59□□□□□ -0.87
TCF4-249ENST00000625716 BBXQ8WY36 941 aaPredicted RBP9.59□□□□□ -0.87
TCF4-249ENST00000625716 KCNK17Q96T54 332 aa9.59□□□□□ -0.87
TCF4-249ENST00000625716 EFCAB6Q5THR3 1501 aa9.59□□□□□ -0.87
TCF4-249ENST00000625716 RPRD2Q5VT52 1461 aaKnown RBP9.59□□□□□ -0.87
TCF4-249ENST00000625716 HDGFP51858 240 aaKnown RBP9.58□□□□□ -0.88
TCF4-249ENST00000625716 TRIM52Q96A61 297 aa9.58□□□□□ -0.88
TCF4-249ENST00000625716 BCANQ96GW7 911 aa9.58□□□□□ -0.88
TCF4-249ENST00000625716 NOS1P29475 1434 aa9.57□□□□□ -0.88
TCF4-249ENST00000625716 BCL2L12Q9HB09 334 aa9.57□□□□□ -0.88
TCF4-249ENST00000625716 RTN4Q9NQC3 1192 aaKnown RBP9.57□□□□□ -0.88
TCF4-249ENST00000625716 UNC13BO14795 1591 aa9.57□□□□□ -0.88
TCF4-249ENST00000625716 TET3O43151 1660 aa9.57□□□□□ -0.88
TCF4-249ENST00000625716 POLR1AO95602 1720 aaPredicted RBP9.56□□□□□ -0.88
TCF4-249ENST00000625716 MED14O60244 1454 aa9.56□□□□□ -0.88
TCF4-249ENST00000625716 SCAF11Q99590 1463 aaKnown RBP9.56□□□□□ -0.88
TCF4-249ENST00000625716 TMEM2Q9UHN6 1383 aa9.56□□□□□ -0.88
TCF4-249ENST00000625716 LTKP29376 864 aa9.56□□□□□ -0.88
TCF4-249ENST00000625716 UBR1Q8IWV7 1749 aa9.56□□□□□ -0.88
TCF4-249ENST00000625716 PIK3C2BO00750 1634 aa9.56□□□□□ -0.88
TCF4-249ENST00000625716 LTBP4Q8N2S1 1624 aa9.56□□□□□ -0.88
TCF4-249ENST00000625716 PPP1R15AO75807 674 aaPredicted RBP9.55□□□□□ -0.88
TCF4-249ENST00000625716 MAP3K9P80192 1104 aa9.55□□□□□ -0.88
TCF4-249ENST00000625716 VPS9D1Q9Y2B5 631 aa9.55□□□□□ -0.88
TCF4-249ENST00000625716 NAIPQ13075 1403 aa9.55□□□□□ -0.88
TCF4-249ENST00000625716 GCC2Q8IWJ2 1684 aa9.55□□□□□ -0.88
TCF4-249ENST00000625716 NEURL4Q96JN8 1562 aa9.54□□□□□ -0.88
TCF4-249ENST00000625716 IQSEC2Q5JU85 1478 aa9.54□□□□□ -0.88
TCF4-249ENST00000625716 IQGAP3Q86VI3 1631 aa9.54□□□□□ -0.88
TCF4-249ENST00000625716 CAMK2BQ13554 666 aa9.54□□□□□ -0.88
TCF4-249ENST00000625716 ADAM33Q9BZ11 813 aa9.54□□□□□ -0.88
TCF4-249ENST00000625716 SLIT1O75093 1534 aa9.54□□□□□ -0.88
TCF4-249ENST00000625716 SYNMO15061 1565 aa9.54□□□□□ -0.88
TCF4-249ENST00000625716 ARHGAP23Q9P227 1491 aa9.53□□□□□ -0.88
TCF4-249ENST00000625716 IQGAP1P46940 1657 aa9.53□□□□□ -0.88
TCF4-249ENST00000625716 UBAP1LF5GYI3 381 aa9.53□□□□□ -0.88
TCF4-249ENST00000625716 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.53□□□□□ -0.88
TCF4-249ENST00000625716 HFM1A2PYH4 1435 aa9.53□□□□□ -0.88
TCF4-249ENST00000625716 ADGRB3O60242 1522 aa9.52□□□□□ -0.88
TCF4-249ENST00000625716 CPS1P31327 1500 aa9.52□□□□□ -0.88
TCF4-249ENST00000625716 AMER1Q5JTC6 1135 aaPredicted RBP9.52□□□□□ -0.89
TCF4-249ENST00000625716 SLC4A5Q9BY07 1137 aa9.52□□□□□ -0.89
TCF4-249ENST00000625716 KDM5AP29375 1690 aaKnown RBP9.51□□□□□ -0.89
TCF4-249ENST00000625716 TOM1O60784 492 aa9.51□□□□□ -0.89
TCF4-249ENST00000625716 ZNF326Q5BKZ1 582 aaKnown RBP9.51□□□□□ -0.89
TCF4-249ENST00000625716 ZDHHC16Q969W1 377 aa9.51□□□□□ -0.89
TCF4-249ENST00000625716 PCDHGA10Q9Y5H3 936 aa9.51□□□□□ -0.89
TCF4-249ENST00000625716 E9PCH4 1651 aa9.51□□□□□ -0.89
TCF4-249ENST00000625716 ACIN1Q9UKV3 1341 aaKnown RBP9.51□□□□□ -0.89
TCF4-249ENST00000625716 RIMS2Q9UQ26 1411 aa9.5□□□□□ -0.89
TCF4-249ENST00000625716 SLC26A8Q96RN1 970 aa9.5□□□□□ -0.89
TCF4-249ENST00000625716 ZBED2Q9BTP6 218 aa9.5□□□□□ -0.89
TCF4-249ENST00000625716 BHMG1C9JSJ3 638 aaPredicted RBP9.49□□□□□ -0.89
TCF4-249ENST00000625716 PTPREP23469 700 aa9.49□□□□□ -0.89
TCF4-249ENST00000625716 NUTM2DQ5VT03 806 aaPredicted RBP9.49□□□□□ -0.89
TCF4-249ENST00000625716 PIP4K2BP78356 416 aa9.48□□□□□ -0.89
TCF4-249ENST00000625716 HCSTQ9UBK5 93 aa9.48□□□□□ -0.89
TCF4-249ENST00000625716 TMEM131LA2VDJ0 1609 aa9.47□□□□□ -0.89
TCF4-249ENST00000625716 DPYSL4O14531 572 aa9.47□□□□□ -0.89
TCF4-249ENST00000625716 KCNA6P17658 529 aa9.47□□□□□ -0.89
TCF4-249ENST00000625716 SPRYD3Q8NCJ5 442 aa9.47□□□□□ -0.89
TCF4-249ENST00000625716 KCTD12Q96CX2 325 aaKnown RBP9.47□□□□□ -0.89
TCF4-249ENST00000625716 PLEKHG1Q9ULL1 1385 aa9.47□□□□□ -0.89
TCF4-249ENST00000625716 PROSER2Q86WR7 435 aaPredicted RBP9.46□□□□□ -0.9
TCF4-249ENST00000625716 ZFYVE9O95405 1425 aa9.46□□□□□ -0.9
TCF4-249ENST00000625716 SETD5Q9C0A6 1442 aa9.46□□□□□ -0.9
TCF4-249ENST00000625716 COL9A1P20849 921 aa9.45□□□□□ -0.9
TCF4-249ENST00000625716 MPHOSPH9Q99550 1183 aa9.45□□□□□ -0.9
TCF4-249ENST00000625716 TBX22Q9Y458 520 aa9.45□□□□□ -0.9
TCF4-249ENST00000625716 LRRC7Q96NW7 1537 aa9.45□□□□□ -0.9
TCF4-249ENST00000625716 SPHKAPQ2M3C7 1700 aa9.45□□□□□ -0.9
TCF4-249ENST00000625716 TRPM2O94759 1503 aa9.43□□□□□ -0.9
TCF4-249ENST00000625716 PHF14O94880 888 aa9.43□□□□□ -0.9
TCF4-249ENST00000625716 C14orf37Q86TY3 774 aa9.43□□□□□ -0.9
TCF4-249ENST00000625716 MYO5BQ9ULV0 1848 aa9.42□□□□□ -0.9
TCF4-249ENST00000625716 TMEM94Q12767 1356 aa9.42□□□□□ -0.9
TCF4-249ENST00000625716 RPGRIP1LQ68CZ1 1315 aa9.42□□□□□ -0.9
TCF4-249ENST00000625716 CCDC144AA2RUR9 1427 aa9.41□□□□□ -0.9
TCF4-249ENST00000625716 TYW1BQ6NUM6 668 aa9.41□□□□□ -0.9
TCF4-249ENST00000625716 RBM33Q96EV2 1170 aaKnown RBP9.41□□□□□ -0.9
TCF4-249ENST00000625716 STAC3Q96MF2 364 aa9.41□□□□□ -0.9
TCF4-249ENST00000625716 PLA2G2EQ9NZK7 142 aa9.41□□□□□ -0.9
TCF4-249ENST00000625716 CLTCL1P53675 1640 aa9.41□□□□□ -0.9
TCF4-249ENST00000625716 STRCP1A6NGW2 1772 aa9.4□□□□□ -0.9
TCF4-249ENST00000625716 PIK3R4Q99570 1358 aa9.4□□□□□ -0.9
TCF4-249ENST00000625716 RAB3GAP2Q9H2M9 1393 aa9.4□□□□□ -0.9
TCF4-249ENST00000625716 PPP1R3GB7ZBB8 358 aa9.4□□□□□ -0.9
TCF4-249ENST00000625716 PROX2Q3B8N5 592 aa9.4□□□□□ -0.9
TCF4-249ENST00000625716 PAXIP1Q6ZW49 1069 aaPredicted RBP9.4□□□□□ -0.9
TCF4-249ENST00000625716 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.4□□□□□ -0.9
TCF4-249ENST00000625716 AMOTL2Q9Y2J4 779 aa9.4□□□□□ -0.9
TCF4-249ENST00000625716 DIP2AQ14689 1571 aa9.4□□□□□ -0.9
TCF4-249ENST00000625716 NKTRP30414 1462 aaKnown RBP9.4□□□□□ -0.91
TCF4-249ENST00000625716 MSH6P52701 1360 aa9.39□□□□□ -0.91
TCF4-249ENST00000625716 HSPA1LP34931 641 aa9.39□□□□□ -0.91
TCF4-249ENST00000625716 RGL3Q3MIN7 710 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms