RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 AEBP2Q6ZN18 517 aaPredicted RBP23.02■■□□□ 1.28
TCF4-249ENST00000625716 CHIC1Q5VXU3 224 aa21.88■■□□□ 1.09
TCF4-249ENST00000625716 SENP3Q9H4L4 574 aaPredicted RBP19.47■□□□□ 0.71
TCF4-249ENST00000625716 PHF23Q9BUL5 403 aaPredicted RBP19.3■□□□□ 0.68
TCF4-249ENST00000625716 FOXD1Q16676 465 aa18.23■□□□□ 0.51
TCF4-249ENST00000625716 PLPPR3Q6T4P5 718 aa17.47■□□□□ 0.39
TCF4-249ENST00000625716 PPP6R1Q9UPN7 881 aa17.19■□□□□ 0.34
TCF4-249ENST00000625716 ADRA2BP18089 450 aa17.1■□□□□ 0.33
TCF4-249ENST00000625716 PIAS4Q8N2W9 510 aaPredicted RBP16.98■□□□□ 0.31
TCF4-249ENST00000625716 MSH5O43196 834 aa16.9■□□□□ 0.3
TCF4-249ENST00000625716 POTEDQ86YR6 584 aa16.41■□□□□ 0.22
TCF4-249ENST00000625716 MAPK8IP2Q13387 824 aaPredicted RBP15.71■□□□□ 0.11
TCF4-249ENST00000625716 DMRT2Q9Y5R5 561 aa15.51■□□□□ 0.07
TCF4-249ENST00000625716 SCAF1Q9H7N4 1312 aaKnown RBP15.49■□□□□ 0.07
TCF4-249ENST00000625716 NISCHQ9Y2I1 1504 aa15.44■□□□□ 0.06
TCF4-249ENST00000625716 PPP4R3CPQ6ZMV5 832 aa15.37■□□□□ 0.05
TCF4-249ENST00000625716 CNKSR2Q8WXI2 1034 aa15.03■□□□□ -0
TCF4-249ENST00000625716 HOXD11P31277 338 aaPredicted RBP14.99□□□□□ -0.01
TCF4-249ENST00000625716 RNF216Q9NWF9 866 aaPredicted RBP14.87□□□□□ -0.03
TCF4-249ENST00000625716 DCAF8L1A6NGE4 600 aa14.78□□□□□ -0.04
TCF4-249ENST00000625716 NCBP3Q53F19 620 aaKnown RBP14.72□□□□□ -0.05
TCF4-249ENST00000625716 NPM3O75607 178 aaKnown RBP14.62□□□□□ -0.07
TCF4-249ENST00000625716 RNF39Q9H2S5 420 aa14.51□□□□□ -0.09
TCF4-249ENST00000625716 KCNA4P22459 653 aa14.46□□□□□ -0.09
TCF4-249ENST00000625716 CACNB1Q02641 598 aaPredicted RBP14.45□□□□□ -0.1
TCF4-249ENST00000625716 DNAJC5BQ9UF47 199 aa14.41□□□□□ -0.1
TCF4-249ENST00000625716 C1QBPQ07021 282 aaKnown RBP14.24□□□□□ -0.13
TCF4-249ENST00000625716 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.21□□□□□ -0.13
TCF4-249ENST00000625716 U3KPZ7 1027 aaPredicted RBP14.01□□□□□ -0.17
TCF4-249ENST00000625716 SLC4A2P04920 1241 aa13.99□□□□□ -0.17
TCF4-249ENST00000625716 SPINK5Q9NQ38 1064 aaPredicted RBP13.78□□□□□ -0.2
TCF4-249ENST00000625716 CCDC180Q9P1Z9 1646 aa13.75□□□□□ -0.21
TCF4-249ENST00000625716 CAPN15O75808 1086 aa13.66□□□□□ -0.22
TCF4-249ENST00000625716 DSG3P32926 999 aa13.63□□□□□ -0.23
TCF4-249ENST00000625716 SLC4A1APQ9BWU0 796 aaKnown RBP13.61□□□□□ -0.23
TCF4-249ENST00000625716 ABCC9O60706 1549 aa13.6□□□□□ -0.23
TCF4-249ENST00000625716 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.5□□□□□ -0.25
TCF4-249ENST00000625716 HNRNPUL2Q1KMD3 747 aaKnown RBP13.5□□□□□ -0.25
TCF4-249ENST00000625716 TRHP20396 242 aaPredicted RBP13.49□□□□□ -0.25
TCF4-249ENST00000625716 SAMD1Q6SPF0 538 aaPredicted RBP13.46□□□□□ -0.25
TCF4-249ENST00000625716 MYCNP04198 464 aaPredicted RBP13.45□□□□□ -0.26
TCF4-249ENST00000625716 APLP2Q06481 763 aa13.44□□□□□ -0.26
TCF4-249ENST00000625716 ZNF219Q9P2Y4 722 aaPredicted RBP13.42□□□□□ -0.26
TCF4-249ENST00000625716 ABCB7O75027 752 aa13.41□□□□□ -0.26
TCF4-249ENST00000625716 FOXD4L1Q9NU39 408 aa13.38□□□□□ -0.27
TCF4-249ENST00000625716 ZBTB22O15209 634 aa13.35□□□□□ -0.27
TCF4-249ENST00000625716 ATF5Q9Y2D1 282 aaPredicted RBP13.27□□□□□ -0.29
TCF4-249ENST00000625716 POLA2Q14181 598 aa13.18□□□□□ -0.3
TCF4-249ENST00000625716 DCAF8L2P0C7V8 631 aa13.09□□□□□ -0.31
TCF4-249ENST00000625716 RB1CC1Q8TDY2 1594 aa13.03□□□□□ -0.32
TCF4-249ENST00000625716 NACADO15069 1562 aa12.98□□□□□ -0.33
TCF4-249ENST00000625716 ATXN8OSP0DMR3 200 aa12.96□□□□□ -0.33
TCF4-249ENST00000625716 RBM42Q9BTD8 480 aaKnown RBP12.88□□□□□ -0.35
TCF4-249ENST00000625716 MYO15BQ96JP2 1530 aa12.84□□□□□ -0.35
TCF4-249ENST00000625716 POTEHQ6S545 545 aa12.84□□□□□ -0.35
TCF4-249ENST00000625716 ZCCHC6Q5VYS8 1495 aaKnown RBP12.83□□□□□ -0.36
TCF4-249ENST00000625716 ZBTB12Q9Y330 459 aaPredicted RBP12.81□□□□□ -0.36
TCF4-249ENST00000625716 CSRNP3Q8WYN3 585 aa12.8□□□□□ -0.36
TCF4-249ENST00000625716 DCAF1Q9Y4B6 1507 aa12.76□□□□□ -0.37
TCF4-249ENST00000625716 OSCARQ8IYS5 282 aa12.75□□□□□ -0.37
TCF4-249ENST00000625716 PABPN1Q86U42 306 aaKnown RBP eCLIP12.73□□□□□ -0.37
TCF4-249ENST00000625716 AKT1S1Q96B36 256 aa12.67□□□□□ -0.38
TCF4-249ENST00000625716 MKRN4PQ13434 485 aaPredicted RBP12.65□□□□□ -0.38
TCF4-249ENST00000625716 UNC13AQ9UPW8 1703 aa12.64□□□□□ -0.39
TCF4-249ENST00000625716 CHRDL2Q6WN34 429 aa12.63□□□□□ -0.39
TCF4-249ENST00000625716 EHMT2Q96KQ7 1210 aa12.62□□□□□ -0.39
TCF4-249ENST00000625716 REM2Q8IYK8 340 aaPredicted RBP12.59□□□□□ -0.39
TCF4-249ENST00000625716 BICRAQ9NZM4 1560 aa12.57□□□□□ -0.4
TCF4-249ENST00000625716 SCRIBQ14160 1630 aa12.56□□□□□ -0.4
TCF4-249ENST00000625716 FBLN2P98095 1184 aa12.56□□□□□ -0.4
TCF4-249ENST00000625716 SPDYE2BA6NHP3 402 aa12.49□□□□□ -0.41
TCF4-249ENST00000625716 SPDYE6P0CI01 402 aa12.49□□□□□ -0.41
TCF4-249ENST00000625716 SPDYE2Q495Y8 402 aa12.49□□□□□ -0.41
TCF4-249ENST00000625716 SHROOM4Q9ULL8 1493 aa12.48□□□□□ -0.41
TCF4-249ENST00000625716 PITPNM1O00562 1244 aa12.46□□□□□ -0.41
TCF4-249ENST00000625716 PIP4P2Q8N4L2 257 aa12.4□□□□□ -0.42
TCF4-249ENST00000625716 SSUH2Q9Y2M2 353 aa12.39□□□□□ -0.43
TCF4-249ENST00000625716 ZNF692Q9BU19 519 aaPredicted RBP12.37□□□□□ -0.43
TCF4-249ENST00000625716 FXR2P51116 673 aaKnown RBP eCLIP12.34□□□□□ -0.43
TCF4-249ENST00000625716 EIF4G1Q04637 1599 aaKnown RBP12.29□□□□□ -0.44
TCF4-249ENST00000625716 CC2D2AQ9P2K1 1620 aa12.27□□□□□ -0.44
TCF4-249ENST00000625716 CECR2Q9BXF3 1484 aa12.24□□□□□ -0.45
TCF4-249ENST00000625716 SPDYE1Q8NFV5 336 aaPredicted RBP12.22□□□□□ -0.45
TCF4-249ENST00000625716 CLEC11AQ9Y240 323 aa12.21□□□□□ -0.45
TCF4-249ENST00000625716 PRKAR2AP13861 404 aaKnown RBP12.11□□□□□ -0.47
TCF4-249ENST00000625716 SP7Q8TDD2 431 aaPredicted RBP12.09□□□□□ -0.47
TCF4-249ENST00000625716 HAX1O00165 279 aa12.08□□□□□ -0.48
TCF4-249ENST00000625716 EVX2Q03828 476 aa12.08□□□□□ -0.48
TCF4-249ENST00000625716 CHADLQ6NUI6 762 aa12.04□□□□□ -0.48
TCF4-249ENST00000625716 PRR29P0C7W0 189 aa12.02□□□□□ -0.49
TCF4-249ENST00000625716 SPDYE4A6NLX3 237 aa12.01□□□□□ -0.49
TCF4-249ENST00000625716 BAZ1AQ9NRL2 1556 aaPredicted RBP12□□□□□ -0.49
TCF4-249ENST00000625716 SMARCA4P51532 1647 aa11.99□□□□□ -0.49
TCF4-249ENST00000625716 NCAPD3P42695 1498 aa11.98□□□□□ -0.49
TCF4-249ENST00000625716 ATAD2BQ9ULI0 1458 aa11.97□□□□□ -0.49
TCF4-249ENST00000625716 SMARCA2P51531 1590 aa11.96□□□□□ -0.49
TCF4-249ENST00000625716 C19orf67A6NJJ6 358 aa11.94□□□□□ -0.5
TCF4-249ENST00000625716 HMGXB3Q12766 1538 aa11.9□□□□□ -0.5
TCF4-249ENST00000625716 BAZ1BQ9UIG0 1483 aaKnown RBP11.89□□□□□ -0.51
TCF4-249ENST00000625716 MROH2BQ7Z745 1585 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 323.2 ms