RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 CEP152O94986 1710 aa10.52□□□□□ -0.73
HDAC3-209ENST00000486618 PSDA5PKW4 1024 aaPredicted RBP10.51□□□□□ -0.73
HDAC3-209ENST00000486618 KCNA6P17658 529 aa10.51□□□□□ -0.73
HDAC3-209ENST00000486618 PLCB2Q00722 1185 aa10.51□□□□□ -0.73
HDAC3-209ENST00000486618 PODXL2Q9NZ53 605 aa10.51□□□□□ -0.73
HDAC3-209ENST00000486618 ARHGAP31Q2M1Z3 1444 aa10.5□□□□□ -0.73
HDAC3-209ENST00000486618 DUOX2Q9NRD8 1548 aa10.5□□□□□ -0.73
HDAC3-209ENST00000486618 POTEEQ6S8J3 1075 aa10.5□□□□□ -0.73
HDAC3-209ENST00000486618 PROSER2Q86WR7 435 aaPredicted RBP10.5□□□□□ -0.73
HDAC3-209ENST00000486618 EMILIN3Q9NT22 766 aa10.5□□□□□ -0.73
HDAC3-209ENST00000486618 MROH1Q8NDA8 1641 aa10.5□□□□□ -0.73
HDAC3-209ENST00000486618 TMEM94Q12767 1356 aa10.5□□□□□ -0.73
HDAC3-209ENST00000486618 TMEM2Q9UHN6 1383 aa10.5□□□□□ -0.73
HDAC3-209ENST00000486618 LRRC9Q6ZRR7 1453 aa10.49□□□□□ -0.73
HDAC3-209ENST00000486618 KANK1Q14678 1352 aa10.48□□□□□ -0.73
HDAC3-209ENST00000486618 MYOM3Q5VTT5 1437 aa10.48□□□□□ -0.73
HDAC3-209ENST00000486618 PBX2P40425 430 aa10.47□□□□□ -0.73
HDAC3-209ENST00000486618 AXIN2Q9Y2T1 843 aa10.47□□□□□ -0.73
HDAC3-209ENST00000486618 PIK3C2BO00750 1634 aa10.47□□□□□ -0.73
HDAC3-209ENST00000486618 ROBO1Q9Y6N7 1651 aa10.47□□□□□ -0.73
HDAC3-209ENST00000486618 LSM11P83369 360 aaKnown RBP eCLIP10.46□□□□□ -0.73
HDAC3-209ENST00000486618 PPP4R3BQ5MIZ7 849 aa10.46□□□□□ -0.73
HDAC3-209ENST00000486618 SLC26A8Q96RN1 970 aa10.46□□□□□ -0.73
HDAC3-209ENST00000486618 MSH6P52701 1360 aa10.46□□□□□ -0.74
HDAC3-209ENST00000486618 KIF15Q9NS87 1388 aa10.46□□□□□ -0.74
HDAC3-209ENST00000486618 ERBINQ96RT1 1412 aa10.46□□□□□ -0.74
HDAC3-209ENST00000486618 KDM5AP29375 1690 aaKnown RBP10.46□□□□□ -0.74
HDAC3-209ENST00000486618 PRDM15P57071 1507 aaPredicted RBP10.45□□□□□ -0.74
HDAC3-209ENST00000486618 EFCAB6Q5THR3 1501 aa10.45□□□□□ -0.74
HDAC3-209ENST00000486618 JCADQ9P266 1359 aa10.45□□□□□ -0.74
HDAC3-209ENST00000486618 EVI5O60447 810 aa10.45□□□□□ -0.74
HDAC3-209ENST00000486618 MAP3K9P80192 1104 aa10.45□□□□□ -0.74
HDAC3-209ENST00000486618 CAMK2BQ13554 666 aa10.45□□□□□ -0.74
HDAC3-209ENST00000486618 IDI1Q13907 227 aa10.45□□□□□ -0.74
HDAC3-209ENST00000486618 SLAIN2Q9P270 581 aa10.45□□□□□ -0.74
HDAC3-209ENST00000486618 ANKRD13DQ6ZTN6 518 aa10.44□□□□□ -0.74
HDAC3-209ENST00000486618 ANO8Q9HCE9 1232 aaPredicted RBP10.44□□□□□ -0.74
HDAC3-209ENST00000486618 RRP7BPQ9NSQ0 103 aa10.44□□□□□ -0.74
HDAC3-209ENST00000486618 MAP3K1Q13233 1512 aa10.43□□□□□ -0.74
HDAC3-209ENST00000486618 NKTRP30414 1462 aaKnown RBP10.43□□□□□ -0.74
HDAC3-209ENST00000486618 HDGFP51858 240 aaKnown RBP10.43□□□□□ -0.74
HDAC3-209ENST00000486618 RBM33Q96EV2 1170 aaKnown RBP10.43□□□□□ -0.74
HDAC3-209ENST00000486618 PHLPP1O60346 1717 aa10.43□□□□□ -0.74
HDAC3-209ENST00000486618 TET3O43151 1660 aa10.43□□□□□ -0.74
HDAC3-209ENST00000486618 ARHGAP33O14559 1287 aa10.42□□□□□ -0.74
HDAC3-209ENST00000486618 ZNF772Q68DY9 489 aaPredicted RBP10.42□□□□□ -0.74
HDAC3-209ENST00000486618 ZNF454Q8N9F8 522 aa10.42□□□□□ -0.74
HDAC3-209ENST00000486618 SLC52A1Q9NWF4 448 aa10.42□□□□□ -0.74
HDAC3-209ENST00000486618 VPS8Q8N3P4 1428 aa10.41□□□□□ -0.74
HDAC3-209ENST00000486618 HAP1P54257 671 aaPredicted RBP10.41□□□□□ -0.74
HDAC3-209ENST00000486618 KANK4Q5T7N3 995 aaPredicted RBP10.41□□□□□ -0.74
HDAC3-209ENST00000486618 MEX3CQ5U5Q3 659 aaKnown RBP10.41□□□□□ -0.74
HDAC3-209ENST00000486618 NWD1Q149M9 1564 aa10.4□□□□□ -0.74
HDAC3-209ENST00000486618 SPATA31A6Q5VVP1 1343 aa10.4□□□□□ -0.74
HDAC3-209ENST00000486618 LMTK2Q8IWU2 1503 aa10.4□□□□□ -0.74
HDAC3-209ENST00000486618 FOSBP53539 338 aa10.4□□□□□ -0.74
HDAC3-209ENST00000486618 SETD1AO15047 1707 aaKnown RBP10.4□□□□□ -0.74
HDAC3-209ENST00000486618 ABCC5O15440 1437 aa10.4□□□□□ -0.75
HDAC3-209ENST00000486618 PPP1R15AO75807 674 aaPredicted RBP10.39□□□□□ -0.75
HDAC3-209ENST00000486618 PSEN2P49810 448 aa10.39□□□□□ -0.75
HDAC3-209ENST00000486618 C14orf37Q86TY3 774 aa10.39□□□□□ -0.75
HDAC3-209ENST00000486618 FGD6Q6ZV73 1430 aa10.39□□□□□ -0.75
HDAC3-209ENST00000486618 NCOA3Q9Y6Q9 1424 aa10.39□□□□□ -0.75
HDAC3-209ENST00000486618 ANKRD30AQ9BXX3 1397 aa10.39□□□□□ -0.75
HDAC3-209ENST00000486618 ADGRB3O60242 1522 aa10.38□□□□□ -0.75
HDAC3-209ENST00000486618 CROCC2H7BZ55 1655 aa10.38□□□□□ -0.75
HDAC3-209ENST00000486618 DPYSL4O14531 572 aa10.38□□□□□ -0.75
HDAC3-209ENST00000486618 NOS1P29475 1434 aa10.38□□□□□ -0.75
HDAC3-209ENST00000486618 CHD2O14647 1828 aaKnown RBP10.37□□□□□ -0.75
HDAC3-209ENST00000486618 PTGER2P43116 358 aa10.37□□□□□ -0.75
HDAC3-209ENST00000486618 DAPK1P53355 1430 aa10.37□□□□□ -0.75
HDAC3-209ENST00000486618 DMRTA1Q5VZB9 504 aa10.37□□□□□ -0.75
HDAC3-209ENST00000486618 TRIM52Q96A61 297 aa10.37□□□□□ -0.75
HDAC3-209ENST00000486618 TBX22Q9Y458 520 aa10.37□□□□□ -0.75
HDAC3-209ENST00000486618 PLEKHG1Q9ULL1 1385 aa10.37□□□□□ -0.75
HDAC3-209ENST00000486618 ATF3P18847 181 aa10.36□□□□□ -0.75
HDAC3-209ENST00000486618 RXRBP28702 533 aa10.36□□□□□ -0.75
HDAC3-209ENST00000486618 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.36□□□□□ -0.75
HDAC3-209ENST00000486618 RNF166Q96A37 237 aaPredicted RBP10.36□□□□□ -0.75
HDAC3-209ENST00000486618 KCNK17Q96T54 332 aa10.36□□□□□ -0.75
HDAC3-209ENST00000486618 C19orf44Q9H6X5 657 aa10.36□□□□□ -0.75
HDAC3-209ENST00000486618 CHIC2Q9UKJ5 165 aa10.36□□□□□ -0.75
HDAC3-209ENST00000486618 COL16A1Q07092 1604 aaPredicted RBP10.36□□□□□ -0.75
HDAC3-209ENST00000486618 PTPN23Q9H3S7 1636 aa10.36□□□□□ -0.75
HDAC3-209ENST00000486618 ADGRD1Q6QNK2 874 aa10.35□□□□□ -0.75
HDAC3-209ENST00000486618 BCL2L12Q9HB09 334 aa10.35□□□□□ -0.75
HDAC3-209ENST00000486618 RPRD2Q5VT52 1461 aaKnown RBP10.35□□□□□ -0.75
HDAC3-209ENST00000486618 RIMS2Q9UQ26 1411 aa10.34□□□□□ -0.75
HDAC3-209ENST00000486618 NPM2Q86SE8 214 aaKnown RBP10.34□□□□□ -0.75
HDAC3-209ENST00000486618 ZFYVE9O95405 1425 aa10.33□□□□□ -0.76
HDAC3-209ENST00000486618 LRP6O75581 1613 aa10.33□□□□□ -0.76
HDAC3-209ENST00000486618 ZDHHC16Q969W1 377 aa10.33□□□□□ -0.76
HDAC3-209ENST00000486618 PIK3R4Q99570 1358 aa10.33□□□□□ -0.76
HDAC3-209ENST00000486618 MYO5BQ9ULV0 1848 aa10.33□□□□□ -0.76
HDAC3-209ENST00000486618 SHPRHQ149N8 1683 aa10.32□□□□□ -0.76
HDAC3-209ENST00000486618 CDK12Q9NYV4 1490 aaPredicted RBP10.32□□□□□ -0.76
HDAC3-209ENST00000486618 E2F4Q16254 413 aa10.32□□□□□ -0.76
HDAC3-209ENST00000486618 ADAM33Q9BZ11 813 aa10.32□□□□□ -0.76
HDAC3-209ENST00000486618 TSHZ2Q9NRE2 1034 aa10.32□□□□□ -0.76
HDAC3-209ENST00000486618 WDR70Q9NW82 654 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms