RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 GLI2P10070 1586 aa27.11■■□□□ 1.93
TRIM28-201ENST00000253024 IFT172Q9UG01 1749 aa27.11■■□□□ 1.93
TRIM28-201ENST00000253024 PLEKHF1Q96S99 279 aa27.1■■□□□ 1.93
TRIM28-201ENST00000253024 EMILIN1Q9Y6C2 1016 aa27.1■■□□□ 1.93
TRIM28-201ENST00000253024 PHACTR3Q96KR7 559 aa27.1■■□□□ 1.93
TRIM28-201ENST00000253024 HDGFL2Q7Z4V5 671 aaPredicted RBP27.08■■□□□ 1.93
TRIM28-201ENST00000253024 GZF1Q9H116 711 aaPredicted RBP27.08■■□□□ 1.93
TRIM28-201ENST00000253024 IQSEC2Q5JU85 1478 aa27.08■■□□□ 1.93
TRIM28-201ENST00000253024 SIGLEC1Q9BZZ2 1709 aa27.07■■□□□ 1.92
TRIM28-201ENST00000253024 PPLO60437 1756 aa27.07■■□□□ 1.92
TRIM28-201ENST00000253024 DCTN1Q14203 1278 aa27.06■■□□□ 1.92
TRIM28-201ENST00000253024 RRS1Q15050 365 aaKnown RBP27.06■■□□□ 1.92
TRIM28-201ENST00000253024 ATF7IPQ6VMQ6 1270 aa27.06■■□□□ 1.92
TRIM28-201ENST00000253024 TBC1D2Q9BYX2 928 aa27.06■■□□□ 1.92
TRIM28-201ENST00000253024 ANO8Q9HCE9 1232 aaPredicted RBP27.06■■□□□ 1.92
TRIM28-201ENST00000253024 BECN1Q14457 450 aa27.05■■□□□ 1.92
TRIM28-201ENST00000253024 NME9Q86XW9 330 aa27.04■■□□□ 1.92
TRIM28-201ENST00000253024 TSPYL6Q8N831 410 aa27.04■■□□□ 1.92
TRIM28-201ENST00000253024 CAMSAP1Q5T5Y3 1602 aa27.04■■□□□ 1.92
TRIM28-201ENST00000253024 FAM83GA6ND36 823 aa27.03■■□□□ 1.92
TRIM28-201ENST00000253024 CCDC27Q2M243 656 aa27.03■■□□□ 1.92
TRIM28-201ENST00000253024 TXNDC2Q86VQ3 553 aa27.03■■□□□ 1.92
TRIM28-201ENST00000253024 MLH3Q9UHC1 1453 aa27.03■■□□□ 1.92
TRIM28-201ENST00000253024 HECW2Q9P2P5 1572 aa27.02■■□□□ 1.92
TRIM28-201ENST00000253024 FAM69CQ0P6D2 419 aa27.02■■□□□ 1.92
TRIM28-201ENST00000253024 LMTK2Q8IWU2 1503 aa27.02■■□□□ 1.92
TRIM28-201ENST00000253024 FOXD4L1Q9NU39 408 aa27.02■■□□□ 1.92
TRIM28-201ENST00000253024 SETBP1Q9Y6X0 1596 aa27.01■■□□□ 1.91
TRIM28-201ENST00000253024 SLC52A1Q9NWF4 448 aa27■■□□□ 1.91
TRIM28-201ENST00000253024 ABCC11Q96J66 1382 aa27■■□□□ 1.91
TRIM28-201ENST00000253024 MYO3AQ8NEV4 1616 aa26.99■■□□□ 1.91
TRIM28-201ENST00000253024 TBC1D32Q96NH3 1257 aa26.99■■□□□ 1.91
TRIM28-201ENST00000253024 POLKQ9UBT6 870 aa26.99■■□□□ 1.91
TRIM28-201ENST00000253024 NEXMIFQ5QGS0 1516 aa26.98■■□□□ 1.91
TRIM28-201ENST00000253024 NINLQ9Y2I6 1382 aa26.98■■□□□ 1.91
TRIM28-201ENST00000253024 APBB1O00213 710 aa26.97■■□□□ 1.91
TRIM28-201ENST00000253024 DDX19BQ9UMR2 479 aa26.97■■□□□ 1.91
TRIM28-201ENST00000253024 C22orf23Q9BZE7 217 aa26.96■■□□□ 1.91
TRIM28-201ENST00000253024 YTHDC2Q9H6S0 1430 aaKnown RBP26.96■■□□□ 1.91
TRIM28-201ENST00000253024 ANKRD45Q5TZF3 282 aa26.95■■□□□ 1.9
TRIM28-201ENST00000253024 ATAD2Q6PL18 1390 aa26.95■■□□□ 1.9
TRIM28-201ENST00000253024 KRT24Q2M2I5 525 aa26.94■■□□□ 1.9
TRIM28-201ENST00000253024 ARHGEF28Q8N1W1 1705 aaKnown RBP26.93■■□□□ 1.9
TRIM28-201ENST00000253024 ZC3H13Q5T200 1668 aaKnown RBP26.92■■□□□ 1.9
TRIM28-201ENST00000253024 MYO5BQ9ULV0 1848 aa26.92■■□□□ 1.9
TRIM28-201ENST00000253024 NEURL4Q96JN8 1562 aa26.9■■□□□ 1.9
TRIM28-201ENST00000253024 RSPH6AQ9H0K4 717 aa26.9■■□□□ 1.9
TRIM28-201ENST00000253024 NLRP1Q9C000 1473 aa26.9■■□□□ 1.9
TRIM28-201ENST00000253024 ZBTB40Q9NUA8 1239 aa26.89■■□□□ 1.9
TRIM28-201ENST00000253024 NSD2O96028 1365 aa26.89■■□□□ 1.9
TRIM28-201ENST00000253024 PIK3C2BO00750 1634 aa26.89■■□□□ 1.9
TRIM28-201ENST00000253024 CD163L1Q9NR16 1453 aa26.87■■□□□ 1.89
TRIM28-201ENST00000253024 AEBP1Q8IUX7 1158 aa26.87■■□□□ 1.89
TRIM28-201ENST00000253024 PTPRMP28827 1452 aa26.87■■□□□ 1.89
TRIM28-201ENST00000253024 DIP2CQ9Y2E4 1556 aa26.86■■□□□ 1.89
TRIM28-201ENST00000253024 C8orf58Q8NAV2 365 aa26.86■■□□□ 1.89
TRIM28-201ENST00000253024 MBIPQ9NS73 344 aa26.85■■□□□ 1.89
TRIM28-201ENST00000253024 IPO8O15397 1037 aaKnown RBP26.85■■□□□ 1.89
TRIM28-201ENST00000253024 ANTXR1Q9H6X2 564 aa26.84■■□□□ 1.89
TRIM28-201ENST00000253024 FCHSD2O94868 740 aa26.84■■□□□ 1.89
TRIM28-201ENST00000253024 MIS18AQ9NYP9 233 aa26.84■■□□□ 1.89
TRIM28-201ENST00000253024 PLEKHG5O94827 1062 aa26.82■■□□□ 1.88
TRIM28-201ENST00000253024 RBM42Q9BTD8 480 aaKnown RBP26.82■■□□□ 1.88
TRIM28-201ENST00000253024 KIF16BQ96L93 1317 aa26.81■■□□□ 1.88
TRIM28-201ENST00000253024 VAMP4O75379 141 aa26.81■■□□□ 1.88
TRIM28-201ENST00000253024 NFE2L2Q16236 605 aa26.81■■□□□ 1.88
TRIM28-201ENST00000253024 CHD1LQ86WJ1 897 aa26.81■■□□□ 1.88
TRIM28-201ENST00000253024 HDAC1Q13547 482 aaPredicted RBP26.8■■□□□ 1.88
TRIM28-201ENST00000253024 TWISTNBQ3B726 338 aaPredicted RBP26.8■■□□□ 1.88
TRIM28-201ENST00000253024 COL3A1P02461 1466 aaPredicted RBP26.8■■□□□ 1.88
TRIM28-201ENST00000253024 MCM10Q7L590 875 aa26.79■■□□□ 1.88
TRIM28-201ENST00000253024 SMC5Q8IY18 1101 aa26.79■■□□□ 1.88
TRIM28-201ENST00000253024 ESF1Q9H501 851 aaKnown RBP26.79■■□□□ 1.88
TRIM28-201ENST00000253024 NUDT16Q96DE0 195 aaKnown RBP26.79■■□□□ 1.88
TRIM28-201ENST00000253024 PUS7Q96PZ0 661 aaKnown RBP26.79■■□□□ 1.88
TRIM28-201ENST00000253024 COG3Q96JB2 828 aa26.77■■□□□ 1.88
TRIM28-201ENST00000253024 HSCBQ8IWL3 235 aa26.76■■□□□ 1.87
TRIM28-201ENST00000253024 HSP90AA1P07900 732 aaKnown RBP26.76■■□□□ 1.87
TRIM28-201ENST00000253024 SULT6B1Q6IMI4 303 aa26.76■■□□□ 1.87
TRIM28-201ENST00000253024 C16orf71Q8IYS4 520 aaPredicted RBP26.76■■□□□ 1.87
TRIM28-201ENST00000253024 WASLO00401 505 aaPredicted RBP26.75■■□□□ 1.87
TRIM28-201ENST00000253024 PRKCSHP14314 528 aaPredicted RBP26.75■■□□□ 1.87
TRIM28-201ENST00000253024 NUCB1Q02818 461 aa26.75■■□□□ 1.87
TRIM28-201ENST00000253024 MRPL50Q8N5N7 158 aaKnown RBP26.75■■□□□ 1.87
TRIM28-201ENST00000253024 METP08581 1390 aa26.75■■□□□ 1.87
TRIM28-201ENST00000253024 LRRC7Q96NW7 1537 aa26.75■■□□□ 1.87
TRIM28-201ENST00000253024 ZBTB7BO15156 539 aaPredicted RBP26.75■■□□□ 1.87
TRIM28-201ENST00000253024 SIRT2Q8IXJ6 389 aa26.75■■□□□ 1.87
TRIM28-201ENST00000253024 CT47B1P0C2W7 299 aaPredicted RBP26.74■■□□□ 1.87
TRIM28-201ENST00000253024 IL13P35225 146 aa26.74■■□□□ 1.87
TRIM28-201ENST00000253024 AAMPQ13685 434 aa26.74■■□□□ 1.87
TRIM28-201ENST00000253024 PNNQ9H307 717 aaKnown RBP26.74■■□□□ 1.87
TRIM28-201ENST00000253024 EIF5BO60841 1220 aaKnown RBP26.74■■□□□ 1.87
TRIM28-201ENST00000253024 CD2BP2O95400 341 aaKnown RBP26.73■■□□□ 1.87
TRIM28-201ENST00000253024 TSPOAP1O95153 1857 aa26.73■■□□□ 1.87
TRIM28-201ENST00000253024 PPIP5K1Q6PFW1 1433 aa26.73■■□□□ 1.87
TRIM28-201ENST00000253024 NECTIN2Q92692 538 aa26.72■■□□□ 1.87
TRIM28-201ENST00000253024 NEO1Q92859 1461 aa26.72■■□□□ 1.87
TRIM28-201ENST00000253024 ADGRB2O60241 1585 aa26.72■■□□□ 1.87
TRIM28-201ENST00000253024 PANK2Q9BZ23 570 aa26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms