RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C RSM25P40496 264 aa5.59□□□□□ -1.51
CAF4YKR036C GCR2Q01722 534 aa5.59□□□□□ -1.51
CAF4YKR036C CTI6Q08923 506 aa5.59□□□□□ -1.51
CAF4YKR036C MRC1P25588 1096 aa5.58□□□□□ -1.52
CAF4YKR036C YGL082WP53155 381 aa5.58□□□□□ -1.52
CAF4YKR036C YGL081WP53156 320 aa5.58□□□□□ -1.52
CAF4YKR036C PAP2P53632 584 aaKnown RBP5.58□□□□□ -1.52
CAF4YKR036C VPS20Q04272 221 aa5.58□□□□□ -1.52
CAF4YKR036C YKL068W-AQ3E826 78 aa5.58□□□□□ -1.52
CAF4YKR036C SSA4P22202 642 aaKnown RBP5.58□□□□□ -1.52
CAF4YKR036C MNR2P35724 969 aa5.58□□□□□ -1.52
CAF4YKR036C PFF1P38244 976 aa5.58□□□□□ -1.52
CAF4YKR036C YNL035CP53962 389 aaKnown RBP5.58□□□□□ -1.52
CAF4YKR036C SSL2Q00578 843 aa5.58□□□□□ -1.52
CAF4YKR036C RMT2Q03305 412 aa5.58□□□□□ -1.52
CAF4YKR036C GRX3Q03835 250 aa5.58□□□□□ -1.52
CAF4YKR036C MFT1P33441 392 aaKnown RBP5.57□□□□□ -1.52
CAF4YKR036C MRPL10P36520 322 aa5.57□□□□□ -1.52
CAF4YKR036C AKL1P38080 1108 aaKnown RBP5.57□□□□□ -1.52
CAF4YKR036C FPK1P53739 893 aa5.57□□□□□ -1.52
CAF4YKR036C YNL050CP53952 270 aa5.57□□□□□ -1.52
CAF4YKR036C AOS1Q06624 347 aa5.57□□□□□ -1.52
CAF4YKR036C TLG2Q08144 397 aa5.57□□□□□ -1.52
CAF4YKR036C SEC39Q12745 709 aa5.57□□□□□ -1.52
CAF4YKR036C LPD1P09624 499 aaKnown RBP5.56□□□□□ -1.52
CAF4YKR036C PRD1P25375 712 aa5.56□□□□□ -1.52
CAF4YKR036C DID4P36108 232 aa5.56□□□□□ -1.52
CAF4YKR036C GDT1P38301 280 aaPredicted RBP5.56□□□□□ -1.52
CAF4YKR036C YMR1P47147 688 aaKnown RBP RIP-Chip data5.56□□□□□ -1.52not detected
CAF4YKR036C NKP2Q06162 153 aa5.56□□□□□ -1.52
CAF4YKR036C PUS5Q06244 254 aa5.56□□□□□ -1.52
CAF4YKR036C BIK1P11709 440 aa5.56□□□□□ -1.52
CAF4YKR036C TAF13P11747 167 aa5.56□□□□□ -1.52
CAF4YKR036C SPT5P27692 1063 aaKnown RBP5.56□□□□□ -1.52
CAF4YKR036C CBF5P33322 483 aaKnown RBP RIP-Chip data5.56□□□□□ -1.52not detected
CAF4YKR036C PRP31P49704 494 aaPredicted RBP5.56□□□□□ -1.52
CAF4YKR036C GYL1Q04322 720 aa5.56□□□□□ -1.52
CAF4YKR036C RPS9BP05755 195 aaKnown RBP5.55□□□□□ -1.52
CAF4YKR036C RAD3P06839 778 aa5.55□□□□□ -1.52
CAF4YKR036C SER1P33330 395 aaKnown RBP5.55□□□□□ -1.52
CAF4YKR036C BRN1P38170 754 aa5.55□□□□□ -1.52
CAF4YKR036C HXT13P39924 564 aa5.55□□□□□ -1.52
CAF4YKR036C VPS30Q02948 557 aa5.55□□□□□ -1.52
CAF4YKR036C PUS1Q12211 544 aaKnown RBP5.55□□□□□ -1.52
CAF4YKR036C PHM7Q12252 991 aa5.55□□□□□ -1.52
CAF4YKR036C RAD50P12753 1312 aa5.54□□□□□ -1.52
CAF4YKR036C PET111P08468 800 aa5.54□□□□□ -1.52
CAF4YKR036C KCC4P25389 1037 aa5.54□□□□□ -1.52
CAF4YKR036C ILV3P39522 585 aaKnown RBP5.54□□□□□ -1.52
CAF4YKR036C RRP15Q06511 250 aaPredicted RBP5.54□□□□□ -1.52
CAF4YKR036C RTT109Q07794 436 aa5.54□□□□□ -1.52
CAF4YKR036C TRP5P00931 707 aaKnown RBP5.54□□□□□ -1.52
CAF4YKR036C MRPL32P25348 183 aa5.54□□□□□ -1.52
CAF4YKR036C SMY1P32364 656 aaKnown RBP5.54□□□□□ -1.52
CAF4YKR036C ELM1P32801 640 aa5.54□□□□□ -1.52
CAF4YKR036C SLI15P38283 698 aa5.54□□□□□ -1.52
CAF4YKR036C MVP1P40959 511 aaKnown RBP5.54□□□□□ -1.52
CAF4YKR036C RAT1Q02792 1006 aaKnown RBP5.54□□□□□ -1.52
CAF4YKR036C MAK21Q12176 1025 aaKnown RBP5.54□□□□□ -1.52
CAF4YKR036C TOP1P04786 769 aa5.53□□□□□ -1.52
CAF4YKR036C NTH2P35172 780 aa5.53□□□□□ -1.52
CAF4YKR036C ARP5P53946 755 aa5.53□□□□□ -1.52
CAF4YKR036C ERO1Q03103 563 aa5.53□□□□□ -1.52
CAF4YKR036C IRC3Q06683 689 aa5.53□□□□□ -1.52
CAF4YKR036C TRL1P09880 827 aaKnown RBP5.52□□□□□ -1.53
CAF4YKR036C ZUO1P32527 433 aaKnown RBP5.52□□□□□ -1.53
CAF4YKR036C NPR3P38742 1146 aa5.52□□□□□ -1.53
CAF4YKR036C CTK3P46963 296 aaPredicted RBP5.52□□□□□ -1.53
CAF4YKR036C HXT17P53631 564 aa5.52□□□□□ -1.53
CAF4YKR036C ERV41Q04651 352 aa5.52□□□□□ -1.53
CAF4YKR036C DIB1Q06819 143 aaPredicted RBP5.52□□□□□ -1.53
CAF4YKR036C PEX19Q07418 342 aa5.52□□□□□ -1.53
CAF4YKR036C ALE1Q08548 619 aa5.52□□□□□ -1.53
CAF4YKR036C YPL225WQ08971 146 aaKnown RBP5.52□□□□□ -1.53
CAF4YKR036C LYS2P07702 1392 aa5.52□□□□□ -1.53
CAF4YKR036C ATE1P16639 503 aa5.52□□□□□ -1.53
CAF4YKR036C RET1P22276 1149 aaKnown RBP5.52□□□□□ -1.53
CAF4YKR036C ICL1P28240 557 aaPredicted RBP5.52□□□□□ -1.53
CAF4YKR036C RFC1P38630 861 aaKnown RBP5.52□□□□□ -1.53
CAF4YKR036C JSN1P47135 1091 aaKnown RBP RIP-Chip data5.52□□□□□ -1.53not detected
CAF4YKR036C PXR1P53335 271 aaPredicted RBP5.52□□□□□ -1.53
CAF4YKR036C COG4Q06096 861 aa5.52□□□□□ -1.53
CAF4YKR036C BDF2Q07442 638 aa5.52□□□□□ -1.53
CAF4YKR036C ATG20Q07528 640 aa5.52□□□□□ -1.53
CAF4YKR036C SSP2Q08646 371 aa5.52□□□□□ -1.53
CAF4YKR036C SES1P07284 462 aaKnown RBP5.51□□□□□ -1.53
CAF4YKR036C RNR2P09938 399 aaKnown RBP5.51□□□□□ -1.53
CAF4YKR036C SIT4P20604 311 aa5.51□□□□□ -1.53
CAF4YKR036C YKU70P32807 602 aa5.51□□□□□ -1.53
CAF4YKR036C SHC1P39000 512 aa5.51□□□□□ -1.53
CAF4YKR036C RIO2P40160 425 aaKnown RBP5.51□□□□□ -1.53
CAF4YKR036C MBR1P23493 339 aa5.5□□□□□ -1.53
CAF4YKR036C UGA3P26370 528 aa5.5□□□□□ -1.53
CAF4YKR036C CCT5P40413 562 aaKnown RBP5.5□□□□□ -1.53
CAF4YKR036C BDP1P46678 594 aa5.5□□□□□ -1.53
CAF4YKR036C YGL015CP33199 130 aa5.5□□□□□ -1.53
CAF4YKR036C ORM2Q06144 216 aa5.5□□□□□ -1.53
CAF4YKR036C GIN4Q12263 1142 aa5.5□□□□□ -1.53
CAF4YKR036C THS1P04801 734 aaKnown RBP5.49□□□□□ -1.53
CAF4YKR036C STE11P23561 717 aa5.49□□□□□ -1.53
Retrieved 100 of 5,963 RNA–protein pairs in 93.7 ms