RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP1	YDL122W	YLR326W	Q06170	240 aa	Known RBP	3.21	□□□□□ -1.9
UBP1	YDL122W	RPO41	P13433	1351 aa	Known RBP	3.2	□□□□□ -1.9
UBP1	YDL122W	IRC3	Q06683	689 aa		3.2	□□□□□ -1.9
UBP1	YDL122W	DIB1	Q06819	143 aa	Predicted RBP	3.2	□□□□□ -1.9
UBP1	YDL122W	ULP1	Q02724	621 aa		3.2	□□□□□ -1.9
UBP1	YDL122W	YPR148C	Q06523	435 aa		3.2	□□□□□ -1.9
UBP1	YDL122W	SGD1	Q06132	899 aa		3.19	□□□□□ -1.9
UBP1	YDL122W	ISU2	Q12056	156 aa		3.19	□□□□□ -1.9
UBP1	YDL122W	AHC1	Q12433	566 aa		3.19	□□□□□ -1.9
UBP1	YDL122W	LYS2	P07702	1392 aa		3.19	□□□□□ -1.9
UBP1	YDL122W	SIT4	P20604	311 aa		3.19	□□□□□ -1.9
UBP1	YDL122W	YGR117C	P53270	476 aa		3.19	□□□□□ -1.9
UBP1	YDL122W	ADE16	P54113	591 aa	Known RBP	3.19	□□□□□ -1.9
UBP1	YDL122W	RAD54	P32863	898 aa		3.18	□□□□□ -1.9
UBP1	YDL122W	MTR4	P47047	1073 aa	Known RBP	3.18	□□□□□ -1.9
UBP1	YDL122W	RPP1B	P10622	106 aa	Known RBP	3.18	□□□□□ -1.9
UBP1	YDL122W	PPH3	P32345	308 aa		3.18	□□□□□ -1.9
UBP1	YDL122W	SPR3	P41901	512 aa		3.18	□□□□□ -1.9
UBP1	YDL122W	CRF1	Q04930	467 aa		3.18	□□□□□ -1.9
UBP1	YDL122W	GYP1	Q08484	637 aa		3.18	□□□□□ -1.9
UBP1	YDL122W	UTP10	P42945	1769 aa	Known RBP	3.17	□□□□□ -1.9
UBP1	YDL122W	CSE4	P36012	229 aa		3.17	□□□□□ -1.9
UBP1	YDL122W	VPS62	P53285	467 aa		3.17	□□□□□ -1.9
UBP1	YDL122W	RAT1	Q02792	1006 aa	Known RBP	3.17	□□□□□ -1.9
UBP1	YDL122W	YPR015C	Q12531	247 aa		3.17	□□□□□ -1.9
UBP1	YDL122W	YEL077C	Q3E7X8	1277 aa		3.17	□□□□□ -1.9
UBP1	YDL122W	PSF2	P40359	213 aa		3.17	□□□□□ -1.9
UBP1	YDL122W	YPL034W	Q03083	165 aa		3.17	□□□□□ -1.9
UBP1	YDL122W	REF2	P42073	533 aa	Predicted RBP	3.16	□□□□□ -1.9
UBP1	YDL122W	MDG1	P53885	366 aa		3.16	□□□□□ -1.9
UBP1	YDL122W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	3.16	□□□□□ -1.9	not detected
UBP1	YDL122W	YDR090C	Q03193	310 aa		3.16	□□□□□ -1.9
UBP1	YDL122W	CDC73	Q06697	393 aa		3.16	□□□□□ -1.9
UBP1	YDL122W	MET22	P32179	357 aa		3.15	□□□□□ -1.9
UBP1	YDL122W	AFG2	P32794	780 aa		3.15	□□□□□ -1.9
UBP1	YDL122W	LPD1	P09624	499 aa	Known RBP	3.15	□□□□□ -1.91
UBP1	YDL122W	RAM1	P22007	431 aa		3.15	□□□□□ -1.91
UBP1	YDL122W	ASH1	P34233	588 aa		3.15	□□□□□ -1.91
UBP1	YDL122W	KIC1	P38692	1080 aa		3.14	□□□□□ -1.91
UBP1	YDL122W	TRM44	Q02648	567 aa	Known RBP	3.14	□□□□□ -1.91
UBP1	YDL122W	BDF2	Q07442	638 aa		3.14	□□□□□ -1.91
UBP1	YDL122W	DAP1	Q12091	152 aa		3.14	□□□□□ -1.91
UBP1	YDL122W	MAK21	Q12176	1025 aa	Known RBP	3.14	□□□□□ -1.91
UBP1	YDL122W	RLF2	Q12495	606 aa		3.14	□□□□□ -1.91
UBP1	YDL122W	YDR034W-B	Q6Q5X2	51 aa		3.14	□□□□□ -1.91
UBP1	YDL122W	HKR1	P41809	1802 aa		3.14	□□□□□ -1.91
UBP1	YDL122W	LEU2	P04173	364 aa	Predicted RBP	3.13	□□□□□ -1.91
UBP1	YDL122W	SPB4	P25808	606 aa	Predicted RBP	3.13	□□□□□ -1.91
UBP1	YDL122W	TAF8	Q03750	510 aa		3.13	□□□□□ -1.91
UBP1	YDL122W	CTI6	Q08923	506 aa		3.13	□□□□□ -1.91
UBP1	YDL122W	GAL2	P13181	574 aa		3.13	□□□□□ -1.91
UBP1	YDL122W	FLO1	P32768	1537 aa		3.13	□□□□□ -1.91
UBP1	YDL122W	CSC1	Q06538	782 aa		3.12	□□□□□ -1.91
UBP1	YDL122W	TFB4	Q12004	338 aa		3.12	□□□□□ -1.91
UBP1	YDL122W	COX6	P00427	148 aa		3.12	□□□□□ -1.91
UBP1	YDL122W	HPR1	P17629	752 aa	Known RBP	3.12	□□□□□ -1.91
UBP1	YDL122W	IXR1	P33417	597 aa		3.12	□□□□□ -1.91
UBP1	YDL122W	AIM21	P40563	679 aa		3.12	□□□□□ -1.91
UBP1	YDL122W	VPS70	P47161	811 aa		3.12	□□□□□ -1.91
UBP1	YDL122W	ZDS1	P50111	915 aa	Known RBP	3.12	□□□□□ -1.91
UBP1	YDL122W	ART5	P53244	586 aa	Known RBP	3.12	□□□□□ -1.91
UBP1	YDL122W	SAS4	Q04003	481 aa		3.12	□□□□□ -1.91
UBP1	YDL122W	SSM4	P40318	1319 aa		3.12	□□□□□ -1.91
UBP1	YDL122W	TUS1	Q06412	1307 aa		3.12	□□□□□ -1.91
UBP1	YDL122W	RPS24A	P0CX31	135 aa	Known RBP	3.11	□□□□□ -1.91
UBP1	YDL122W	RPS24B	P0CX32	135 aa	Known RBP	3.11	□□□□□ -1.91
UBP1	YDL122W	OSM1	P21375	501 aa	Known RBP	3.11	□□□□□ -1.91
UBP1	YDL122W	YBP2	P53169	641 aa		3.11	□□□□□ -1.91
UBP1	YDL122W	YDL176W	Q12027	708 aa		3.11	□□□□□ -1.91
UBP1	YDL122W	TY3A-G	Q12173	290 aa		3.11	□□□□□ -1.91
UBP1	YDL122W	STB3	Q12427	513 aa		3.11	□□□□□ -1.91
UBP1	YDL122W	TY3A-I	Q99219	290 aa		3.11	□□□□□ -1.91
UBP1	YDL122W	PDR1	P12383	1068 aa		3.1	□□□□□ -1.91
UBP1	YDL122W	ICL2	Q12031	575 aa		3.1	□□□□□ -1.91
UBP1	YDL122W	PMD1	P32634	1753 aa		3.1	□□□□□ -1.91
UBP1	YDL122W	RPL40A	P0CH08	128 aa	Known RBP	3.1	□□□□□ -1.91
UBP1	YDL122W	RPL40B	P0CH09	128 aa	Known RBP	3.1	□□□□□ -1.91
UBP1	YDL122W	ESL2	P36168	1195 aa		3.1	□□□□□ -1.91
UBP1	YDL122W	ORC6	P38826	435 aa		3.1	□□□□□ -1.91
UBP1	YDL122W	PNT1	P38969	423 aa		3.1	□□□□□ -1.91
UBP1	YDL122W	TAO3	P40468	2376 aa		3.1	□□□□□ -1.91
UBP1	YDL122W	ERG7	P38604	731 aa		3.09	□□□□□ -1.91
UBP1	YDL122W	VID30	P53076	958 aa		3.09	□□□□□ -1.91
UBP1	YDL122W	UBX2	Q04228	584 aa		3.09	□□□□□ -1.91
UBP1	YDL122W	RRG1	Q12167	365 aa	Predicted RBP	3.09	□□□□□ -1.91
UBP1	YDL122W	YRR1	Q12172	810 aa		3.09	□□□□□ -1.92
UBP1	YDL122W	AIR1	P40507	360 aa	Known RBP	3.08	□□□□□ -1.92
UBP1	YDL122W	MCM6	P53091	1017 aa	Known RBP	3.08	□□□□□ -1.92
UBP1	YDL122W	ECM16	Q04217	1267 aa	Known RBP	3.08	□□□□□ -1.92
UBP1	YDL122W	INP54	Q08227	384 aa	Known RBP	3.08	□□□□□ -1.92
UBP1	YDL122W	ADR1	P07248	1323 aa		3.08	□□□□□ -1.92
UBP1	YDL122W	SSK22	P25390	1331 aa	Predicted RBP	3.08	□□□□□ -1.92
UBP1	YDL122W	CBP1	P07252	654 aa		3.08	□□□□□ -1.92
UBP1	YDL122W	YFR016C	P43597	1233 aa	Known RBP	3.08	□□□□□ -1.92
UBP1	YDL122W	TEA1	P47988	759 aa		3.08	□□□□□ -1.92
UBP1	YDL122W	VPS4	P52917	437 aa		3.08	□□□□□ -1.92
UBP1	YDL122W	MAM3	Q12296	706 aa		3.08	□□□□□ -1.92
UBP1	YDL122W	MRF1	P30775	413 aa	Predicted RBP	3.07	□□□□□ -1.92
UBP1	YDL122W	UIP5	P36137	443 aa		3.07	□□□□□ -1.92
UBP1	YDL122W	YDR444W	Q04093	687 aa		3.07	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 81.6 ms