RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 SETD1BQ9UPS6 1966 aaKnown RBP16.04■□□□□ 0.16
SS18-221ENST00000582448 PHF14O94880 888 aa16.03■□□□□ 0.16
SS18-221ENST00000582448 PTGER2P43116 358 aa16.03■□□□□ 0.16
SS18-221ENST00000582448 DDX12PQ92771 950 aa16.03■□□□□ 0.16
SS18-221ENST00000582448 KCNK17Q96T54 332 aa16.03■□□□□ 0.16
SS18-221ENST00000582448 KDM5CP41229 1560 aa16.03■□□□□ 0.16
SS18-221ENST00000582448 DIP2CQ9Y2E4 1556 aa16.03■□□□□ 0.16
SS18-221ENST00000582448 PTPRTO14522 1441 aa16.02■□□□□ 0.16
SS18-221ENST00000582448 SPDYE16A6NNV3 312 aaPredicted RBP16.02■□□□□ 0.16
SS18-221ENST00000582448 MLH3Q9UHC1 1453 aa16.02■□□□□ 0.15
SS18-221ENST00000582448 HNRNPMP52272 730 aaKnown RBP eCLIP16■□□□□ 0.15
SS18-221ENST00000582448 ABCA6Q8N139 1617 aa15.99■□□□□ 0.15
SS18-221ENST00000582448 KDM2AQ9Y2K7 1162 aa15.99■□□□□ 0.15
SS18-221ENST00000582448 C3P01024 1663 aa15.99■□□□□ 0.15
SS18-221ENST00000582448 TYW1BQ6NUM6 668 aa15.98■□□□□ 0.15
SS18-221ENST00000582448 CDC42BPBQ9Y5S2 1711 aa15.98■□□□□ 0.15
SS18-221ENST00000582448 SPAG9O60271 1321 aaKnown RBP15.97■□□□□ 0.15
SS18-221ENST00000582448 GGT6Q6P531 493 aa15.96■□□□□ 0.15
SS18-221ENST00000582448 ZMYM3Q14202 1370 aa15.96■□□□□ 0.15
SS18-221ENST00000582448 REREQ9P2R6 1566 aa15.96■□□□□ 0.14
SS18-221ENST00000582448 CNTLNQ9NXG0 1405 aa15.95■□□□□ 0.14
SS18-221ENST00000582448 AGLP35573 1532 aa15.95■□□□□ 0.14
SS18-221ENST00000582448 UBAP1LF5GYI3 381 aa15.95■□□□□ 0.14
SS18-221ENST00000582448 PTPREP23469 700 aa15.95■□□□□ 0.14
SS18-221ENST00000582448 ARHGEF1Q92888 912 aaKnown RBP15.95■□□□□ 0.14
SS18-221ENST00000582448 ZNF335Q9H4Z2 1342 aaPredicted RBP15.94■□□□□ 0.14
SS18-221ENST00000582448 NCOA1Q15788 1441 aa15.94■□□□□ 0.14
SS18-221ENST00000582448 ABCC1P33527 1531 aa15.94■□□□□ 0.14
SS18-221ENST00000582448 LRRIQ1Q96JM4 1722 aa15.94■□□□□ 0.14
SS18-221ENST00000582448 ADGRD1Q6QNK2 874 aa15.94■□□□□ 0.14
SS18-221ENST00000582448 EPAS1Q99814 870 aa15.94■□□□□ 0.14
SS18-221ENST00000582448 FBXW7Q969H0 707 aa15.93■□□□□ 0.14
SS18-221ENST00000582448 CASKIN1Q8WXD9 1431 aa15.93■□□□□ 0.14
SS18-221ENST00000582448 CFDP1Q9UEE9 299 aaPredicted RBP15.92■□□□□ 0.14
SS18-221ENST00000582448 PREX2Q70Z35 1606 aa15.92■□□□□ 0.14
SS18-221ENST00000582448 LTBP4Q8N2S1 1624 aa15.92■□□□□ 0.14
SS18-221ENST00000582448 CCDC18Q5T9S5 1454 aa15.91■□□□□ 0.14
SS18-221ENST00000582448 CAMSAP1Q5T5Y3 1602 aa15.91■□□□□ 0.14
SS18-221ENST00000582448 KIDINS220Q9ULH0 1771 aa15.91■□□□□ 0.14
SS18-221ENST00000582448 NBR1Q14596 966 aa15.91■□□□□ 0.14
SS18-221ENST00000582448 RBM33Q96EV2 1170 aaKnown RBP15.91■□□□□ 0.14
SS18-221ENST00000582448 ITSN2Q9NZM3 1697 aa15.91■□□□□ 0.14
SS18-221ENST00000582448 SPATA31D1Q6ZQQ2 1576 aa15.91■□□□□ 0.14
SS18-221ENST00000582448 GRXCR2A6NFK2 248 aa15.9■□□□□ 0.14
SS18-221ENST00000582448 TK2O00142 265 aa15.9■□□□□ 0.14
SS18-221ENST00000582448 PRIM1P49642 420 aaKnown RBP15.9■□□□□ 0.14
SS18-221ENST00000582448 COL9A1P20849 921 aa15.89■□□□□ 0.13
SS18-221ENST00000582448 SAMD9LQ8IVG5 1584 aa15.88■□□□□ 0.13
SS18-221ENST00000582448 ZBED2Q9BTP6 218 aa15.88■□□□□ 0.13
SS18-221ENST00000582448 NPATQ14207 1427 aa15.87■□□□□ 0.13
SS18-221ENST00000582448 HRO43593 1189 aa15.87■□□□□ 0.13
SS18-221ENST00000582448 C6orf132Q5T0Z8 1188 aa15.87■□□□□ 0.13
SS18-221ENST00000582448 VPS9D1Q9Y2B5 631 aa15.87■□□□□ 0.13
SS18-221ENST00000582448 SUPT6HQ7KZ85 1726 aaKnown RBP15.87■□□□□ 0.13
SS18-221ENST00000582448 SYCP2Q9BX26 1530 aa15.87■□□□□ 0.13
SS18-221ENST00000582448 CDC42BPAQ5VT25 1732 aa15.86■□□□□ 0.13
SS18-221ENST00000582448 GPATCH8Q9UKJ3 1502 aaKnown RBP15.86■□□□□ 0.13
SS18-221ENST00000582448 EN1Q05925 392 aaPredicted RBP15.86■□□□□ 0.13
SS18-221ENST00000582448 CCNB3Q8WWL7 1395 aa15.86■□□□□ 0.13
SS18-221ENST00000582448 IQSEC2Q5JU85 1478 aa15.85■□□□□ 0.13
SS18-221ENST00000582448 PPP1R3GB7ZBB8 358 aa15.84■□□□□ 0.13
SS18-221ENST00000582448 PIP4K2BP78356 416 aa15.84■□□□□ 0.13
SS18-221ENST00000582448 SLC4A5Q9BY07 1137 aa15.84■□□□□ 0.13
SS18-221ENST00000582448 CEP162Q5TB80 1403 aa15.84■□□□□ 0.13
SS18-221ENST00000582448 A2MP01023 1474 aa15.84■□□□□ 0.13
SS18-221ENST00000582448 OSBPP22059 807 aa15.83■□□□□ 0.12
SS18-221ENST00000582448 MLLT3P42568 568 aaPredicted RBP15.83■□□□□ 0.12
SS18-221ENST00000582448 TSR1Q2NL82 804 aaKnown RBP15.83■□□□□ 0.12
SS18-221ENST00000582448 ZNF644Q9H582 1327 aaPredicted RBP15.83■□□□□ 0.12
SS18-221ENST00000582448 VSIG10Q8N0Z9 540 aa15.82■□□□□ 0.12
SS18-221ENST00000582448 MTUS2Q5JR59 1369 aa15.82■□□□□ 0.12
SS18-221ENST00000582448 CLTCQ00610 1675 aaKnown RBP15.82■□□□□ 0.12
SS18-221ENST00000582448 MAP3K7O43318 606 aa15.81■□□□□ 0.12
SS18-221ENST00000582448 ATP7AQ04656 1500 aa15.81■□□□□ 0.12
SS18-221ENST00000582448 PTPRKQ15262 1439 aa15.81■□□□□ 0.12
SS18-221ENST00000582448 RNF166Q96A37 237 aaPredicted RBP15.81■□□□□ 0.12
SS18-221ENST00000582448 FYCO1Q9BQS8 1478 aa15.81■□□□□ 0.12
SS18-221ENST00000582448 KIAA1107Q9UPP5 1409 aa15.8■□□□□ 0.12
SS18-221ENST00000582448 PROX2Q3B8N5 592 aa15.8■□□□□ 0.12
SS18-221ENST00000582448 MROH2AA6NES4 1674 aa15.79■□□□□ 0.12
SS18-221ENST00000582448 PLEKHH2Q8IVE3 1493 aa15.79■□□□□ 0.12
SS18-221ENST00000582448 FBXO31Q5XUX0 539 aaPredicted RBP15.79■□□□□ 0.12
SS18-221ENST00000582448 KIF3BO15066 747 aa15.78■□□□□ 0.12
SS18-221ENST00000582448 HSPA1LP34931 641 aa15.78■□□□□ 0.12
SS18-221ENST00000582448 TOM1O60784 492 aa15.77■□□□□ 0.12
SS18-221ENST00000582448 PLA2R1Q13018 1463 aa15.77■□□□□ 0.11
SS18-221ENST00000582448 CEP170BQ9Y4F5 1589 aaPredicted RBP15.76■□□□□ 0.11
SS18-221ENST00000582448 BHMG1C9JSJ3 638 aaPredicted RBP15.76■□□□□ 0.11
SS18-221ENST00000582448 MYO3AQ8NEV4 1616 aa15.76■□□□□ 0.11
SS18-221ENST00000582448 SEMA3EO15041 775 aa15.75■□□□□ 0.11
SS18-221ENST00000582448 TCOF1Q13428 1488 aaKnown RBP15.75■□□□□ 0.11
SS18-221ENST00000582448 WASHC2CQ9Y4E1 1318 aa15.73■□□□□ 0.11
SS18-221ENST00000582448 ANKLE2Q86XL3 938 aa15.73■□□□□ 0.11
SS18-221ENST00000582448 CDHR5Q9HBB8 845 aa15.73■□□□□ 0.11
SS18-221ENST00000582448 PLXNC1O60486 1568 aa15.73■□□□□ 0.11
SS18-221ENST00000582448 INO80Q9ULG1 1556 aaPredicted RBP15.73■□□□□ 0.11
SS18-221ENST00000582448 DHX29Q7Z478 1369 aaKnown RBP15.73■□□□□ 0.11
SS18-221ENST00000582448 TNRQ92752 1358 aa15.73■□□□□ 0.11
SS18-221ENST00000582448 A2ML1A8K2U0 1454 aa15.72■□□□□ 0.11
SS18-221ENST00000582448 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms