RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 AEBP2Q6ZN18 517 aaPredicted RBP37.4■■■■□ 3.58
SS18-221ENST00000582448 CHIC1Q5VXU3 224 aa36.06■■■■□ 3.36
SS18-221ENST00000582448 PHF23Q9BUL5 403 aaPredicted RBP31.75■■■□□ 2.67
SS18-221ENST00000582448 SENP3Q9H4L4 574 aaPredicted RBP31.65■■■□□ 2.66
SS18-221ENST00000582448 FOXD1Q16676 465 aa29.52■■■□□ 2.32
SS18-221ENST00000582448 PLPPR3Q6T4P5 718 aa29.05■■■□□ 2.24
SS18-221ENST00000582448 PPP6R1Q9UPN7 881 aa28.15■■■□□ 2.1
SS18-221ENST00000582448 ADRA2BP18089 450 aa28.08■■■□□ 2.09
SS18-221ENST00000582448 PIAS4Q8N2W9 510 aaPredicted RBP27.69■■■□□ 2.02
SS18-221ENST00000582448 MSH5O43196 834 aa27.26■■□□□ 1.95
SS18-221ENST00000582448 MAPK8IP2Q13387 824 aaPredicted RBP25.62■■□□□ 1.69
SS18-221ENST00000582448 PPP4R3CPQ6ZMV5 832 aa25.6■■□□□ 1.69
SS18-221ENST00000582448 POTEDQ86YR6 584 aa25.6■■□□□ 1.69
SS18-221ENST00000582448 SCAF1Q9H7N4 1312 aaKnown RBP25.52■■□□□ 1.68
SS18-221ENST00000582448 DMRT2Q9Y5R5 561 aa25.25■■□□□ 1.63
SS18-221ENST00000582448 CNKSR2Q8WXI2 1034 aa24.93■■□□□ 1.58
SS18-221ENST00000582448 NCBP3Q53F19 620 aaKnown RBP24.73■■□□□ 1.55
SS18-221ENST00000582448 KCNA4P22459 653 aa24.62■■□□□ 1.53
SS18-221ENST00000582448 NISCHQ9Y2I1 1504 aa24.6■■□□□ 1.53
SS18-221ENST00000582448 HOXD11P31277 338 aaPredicted RBP24.57■■□□□ 1.52
SS18-221ENST00000582448 RNF216Q9NWF9 866 aaPredicted RBP24.54■■□□□ 1.52
SS18-221ENST00000582448 NPM3O75607 178 aaKnown RBP24.48■■□□□ 1.51
SS18-221ENST00000582448 DCAF8L1A6NGE4 600 aa24.16■■□□□ 1.46
SS18-221ENST00000582448 DNAJC5BQ9UF47 199 aa23.76■■□□□ 1.39
SS18-221ENST00000582448 RNF39Q9H2S5 420 aa23.39■■□□□ 1.33
SS18-221ENST00000582448 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.38■■□□□ 1.33
SS18-221ENST00000582448 SLC4A1APQ9BWU0 796 aaKnown RBP23.31■■□□□ 1.32
SS18-221ENST00000582448 SLC4A2P04920 1241 aa23.25■■□□□ 1.31
SS18-221ENST00000582448 CACNB1Q02641 598 aaPredicted RBP23.03■■□□□ 1.28
SS18-221ENST00000582448 C1QBPQ07021 282 aaKnown RBP23.03■■□□□ 1.28
SS18-221ENST00000582448 U3KPZ7 1027 aaPredicted RBP23.03■■□□□ 1.28
SS18-221ENST00000582448 FOXD4L1Q9NU39 408 aa22.7■■□□□ 1.22
SS18-221ENST00000582448 ZBTB22O15209 634 aa22.69■■□□□ 1.22
SS18-221ENST00000582448 ABCC9O60706 1549 aa22.57■■□□□ 1.2
SS18-221ENST00000582448 MYCNP04198 464 aaPredicted RBP22.56■■□□□ 1.2
SS18-221ENST00000582448 SPINK5Q9NQ38 1064 aaPredicted RBP22.53■■□□□ 1.2
SS18-221ENST00000582448 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.45■■□□□ 1.18
SS18-221ENST00000582448 HNRNPUL2Q1KMD3 747 aaKnown RBP22.45■■□□□ 1.18
SS18-221ENST00000582448 SAMD1Q6SPF0 538 aaPredicted RBP22.4■■□□□ 1.18
SS18-221ENST00000582448 CAPN15O75808 1086 aa22.38■■□□□ 1.17
SS18-221ENST00000582448 APLP2Q06481 763 aa22.28■■□□□ 1.16
SS18-221ENST00000582448 EHMT2Q96KQ7 1210 aa22.24■■□□□ 1.15
SS18-221ENST00000582448 CSRNP3Q8WYN3 585 aa22.21■■□□□ 1.15
SS18-221ENST00000582448 TRHP20396 242 aaPredicted RBP22.2■■□□□ 1.14
SS18-221ENST00000582448 DSG3P32926 999 aa22.14■■□□□ 1.13
SS18-221ENST00000582448 ATF5Q9Y2D1 282 aaPredicted RBP22.12■■□□□ 1.13
SS18-221ENST00000582448 ZNF219Q9P2Y4 722 aaPredicted RBP22.11■■□□□ 1.13
SS18-221ENST00000582448 CCDC180Q9P1Z9 1646 aa22.05■■□□□ 1.12
SS18-221ENST00000582448 ABCB7O75027 752 aa21.98■■□□□ 1.11
SS18-221ENST00000582448 ATXN8OSP0DMR3 200 aa21.9■■□□□ 1.1
SS18-221ENST00000582448 POLA2Q14181 598 aa21.75■■□□□ 1.07
SS18-221ENST00000582448 ZBTB12Q9Y330 459 aaPredicted RBP21.25■□□□□ 0.99
SS18-221ENST00000582448 RB1CC1Q8TDY2 1594 aa21.23■□□□□ 0.99
SS18-221ENST00000582448 DCAF8L2P0C7V8 631 aa21.22■□□□□ 0.99
SS18-221ENST00000582448 MKRN4PQ13434 485 aaPredicted RBP21.12■□□□□ 0.97
SS18-221ENST00000582448 PABPN1Q86U42 306 aaKnown RBP eCLIP21.08■□□□□ 0.97
SS18-221ENST00000582448 FBLN2P98095 1184 aa21.06■□□□□ 0.96
SS18-221ENST00000582448 OSCARQ8IYS5 282 aa21.05■□□□□ 0.96
SS18-221ENST00000582448 NACADO15069 1562 aa21■□□□□ 0.95
SS18-221ENST00000582448 RBM42Q9BTD8 480 aaKnown RBP20.99■□□□□ 0.95
SS18-221ENST00000582448 SPDYE2BA6NHP3 402 aa20.71■□□□□ 0.91
SS18-221ENST00000582448 SPDYE6P0CI01 402 aa20.71■□□□□ 0.91
SS18-221ENST00000582448 SPDYE2Q495Y8 402 aa20.71■□□□□ 0.91
SS18-221ENST00000582448 AKT1S1Q96B36 256 aa20.71■□□□□ 0.91
SS18-221ENST00000582448 UNC13AQ9UPW8 1703 aa20.67■□□□□ 0.9
SS18-221ENST00000582448 BICRAQ9NZM4 1560 aa20.59■□□□□ 0.89
SS18-221ENST00000582448 ZNF692Q9BU19 519 aaPredicted RBP20.59■□□□□ 0.89
SS18-221ENST00000582448 SSUH2Q9Y2M2 353 aa20.56■□□□□ 0.88
SS18-221ENST00000582448 REM2Q8IYK8 340 aaPredicted RBP20.55■□□□□ 0.88
SS18-221ENST00000582448 MYO15BQ96JP2 1530 aa20.54■□□□□ 0.88
SS18-221ENST00000582448 SPDYE4A6NLX3 237 aa20.37■□□□□ 0.85
SS18-221ENST00000582448 CHRDL2Q6WN34 429 aa20.34■□□□□ 0.85
SS18-221ENST00000582448 PITPNM1O00562 1244 aa20.33■□□□□ 0.85
SS18-221ENST00000582448 CECR2Q9BXF3 1484 aa20.32■□□□□ 0.84
SS18-221ENST00000582448 ZCCHC6Q5VYS8 1495 aaKnown RBP20.29■□□□□ 0.84
SS18-221ENST00000582448 CC2D2AQ9P2K1 1620 aa20.27■□□□□ 0.84
SS18-221ENST00000582448 SCRIBQ14160 1630 aa20.25■□□□□ 0.83
SS18-221ENST00000582448 SHROOM4Q9ULL8 1493 aa20.2■□□□□ 0.82
SS18-221ENST00000582448 DCAF1Q9Y4B6 1507 aa20.2■□□□□ 0.82
SS18-221ENST00000582448 SPDYE1Q8NFV5 336 aaPredicted RBP20.19■□□□□ 0.82
SS18-221ENST00000582448 POTEHQ6S545 545 aa20.16■□□□□ 0.82
SS18-221ENST00000582448 CLEC11AQ9Y240 323 aa20.16■□□□□ 0.82
SS18-221ENST00000582448 EIF4G1Q04637 1599 aaKnown RBP20.15■□□□□ 0.82
SS18-221ENST00000582448 FKBP8Q14318 412 aa20.06■□□□□ 0.8
SS18-221ENST00000582448 PIP4P2Q8N4L2 257 aa20.04■□□□□ 0.8
SS18-221ENST00000582448 FXR2P51116 673 aaKnown RBP eCLIP20.02■□□□□ 0.8
SS18-221ENST00000582448 PROM2Q8N271 834 aa20.01■□□□□ 0.79
SS18-221ENST00000582448 PRR29P0C7W0 189 aa19.89■□□□□ 0.77
SS18-221ENST00000582448 DNAJC5Q9H3Z4 198 aa19.88■□□□□ 0.77
SS18-221ENST00000582448 STAG3Q9UJ98 1225 aa19.83■□□□□ 0.77
SS18-221ENST00000582448 PRKAR2AP13861 404 aaKnown RBP19.79■□□□□ 0.76
SS18-221ENST00000582448 CHADLQ6NUI6 762 aa19.76■□□□□ 0.75
SS18-221ENST00000582448 CREBZFQ9NS37 354 aa19.63■□□□□ 0.73
SS18-221ENST00000582448 ERCC6Q03468 1493 aa19.51■□□□□ 0.71
SS18-221ENST00000582448 FARP1Q9Y4F1 1045 aaPredicted RBP19.49■□□□□ 0.71
SS18-221ENST00000582448 HAX1O00165 279 aa19.46■□□□□ 0.71
SS18-221ENST00000582448 CUX2O14529 1486 aa19.45■□□□□ 0.7
SS18-221ENST00000582448 NCAPD3P42695 1498 aa19.43■□□□□ 0.7
SS18-221ENST00000582448 MNX1P50219 401 aaPredicted RBP19.39■□□□□ 0.69
SS18-221ENST00000582448 EVX2Q03828 476 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms