RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 PNISRQ8TF01 805 aaKnown RBP12.19□□□□□ -0.46
TDP1-210ENST00000554976 FAM135BQ49AJ0 1406 aa12.18□□□□□ -0.46
TDP1-210ENST00000554976 CARD14Q9BXL6 1004 aa12.18□□□□□ -0.46
TDP1-210ENST00000554976 MRS2Q9HD23 443 aa12.18□□□□□ -0.46
TDP1-210ENST00000554976 NRKQ7Z2Y5 1582 aa12.17□□□□□ -0.46
TDP1-210ENST00000554976 BLMP54132 1417 aaPredicted RBP12.17□□□□□ -0.46
TDP1-210ENST00000554976 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.17□□□□□ -0.46
TDP1-210ENST00000554976 CEBPAP49715 358 aaPredicted RBP12.16□□□□□ -0.46
TDP1-210ENST00000554976 PLEKHH1Q9ULM0 1364 aa12.16□□□□□ -0.46
TDP1-210ENST00000554976 NINLQ9Y2I6 1382 aa12.16□□□□□ -0.46
TDP1-210ENST00000554976 PTPRUQ92729 1446 aa12.16□□□□□ -0.46
TDP1-210ENST00000554976 GTF3C3Q9Y5Q9 886 aa12.16□□□□□ -0.46
TDP1-210ENST00000554976 CHD2O14647 1828 aaKnown RBP12.15□□□□□ -0.46
TDP1-210ENST00000554976 ESF1Q9H501 851 aaKnown RBP12.15□□□□□ -0.46
TDP1-210ENST00000554976 ANKRD36BQ8N2N9 1353 aa12.15□□□□□ -0.46
TDP1-210ENST00000554976 ITSN1Q15811 1721 aa12.15□□□□□ -0.46
TDP1-210ENST00000554976 SIRT1Q96EB6 747 aa12.14□□□□□ -0.47
TDP1-210ENST00000554976 NLRP13Q86W25 1043 aa12.14□□□□□ -0.47
TDP1-210ENST00000554976 ZBED9Q6R2W3 1325 aa12.14□□□□□ -0.47
TDP1-210ENST00000554976 EVC2Q86UK5 1308 aa12.14□□□□□ -0.47
TDP1-210ENST00000554976 LTKP29376 864 aa12.13□□□□□ -0.47
TDP1-210ENST00000554976 NSD3Q9BZ95 1437 aa12.13□□□□□ -0.47
TDP1-210ENST00000554976 CDC42BPGQ6DT37 1551 aa12.13□□□□□ -0.47
TDP1-210ENST00000554976 STAG3Q9UJ98 1225 aa12.13□□□□□ -0.47
TDP1-210ENST00000554976 PRAM1Q96QH2 718 aa12.12□□□□□ -0.47
TDP1-210ENST00000554976 ATP7BP35670 1465 aa12.12□□□□□ -0.47
TDP1-210ENST00000554976 CC2D1BQ5T0F9 858 aaKnown RBP12.11□□□□□ -0.47
TDP1-210ENST00000554976 PTCH1Q13635 1447 aa12.11□□□□□ -0.47
TDP1-210ENST00000554976 PPP2R1AP30153 589 aa12.11□□□□□ -0.47
TDP1-210ENST00000554976 A0A1W2PP64 1363 aa12.1□□□□□ -0.47
TDP1-210ENST00000554976 BCL11AQ9H165 835 aa12.1□□□□□ -0.47
TDP1-210ENST00000554976 ATAD2Q6PL18 1390 aa12.1□□□□□ -0.47
TDP1-210ENST00000554976 ROBO2Q9HCK4 1378 aa12.1□□□□□ -0.47
TDP1-210ENST00000554976 HNRNPUQ00839 825 aaKnown RBP eCLIP12.1□□□□□ -0.47
TDP1-210ENST00000554976 FAM9BQ8IZU0 186 aa12.1□□□□□ -0.47
TDP1-210ENST00000554976 KNSTRNQ9Y448 316 aa12.1□□□□□ -0.47
TDP1-210ENST00000554976 SLC12A5Q9H2X9 1139 aa12.09□□□□□ -0.47
TDP1-210ENST00000554976 NALCNQ8IZF0 1738 aa12.09□□□□□ -0.47
TDP1-210ENST00000554976 FMN2Q9NZ56 1722 aa12.09□□□□□ -0.47
TDP1-210ENST00000554976 CPSF1Q10570 1443 aaKnown RBP12.09□□□□□ -0.47
TDP1-210ENST00000554976 SETD1BQ9UPS6 1966 aaKnown RBP12.09□□□□□ -0.47
TDP1-210ENST00000554976 NSD2O96028 1365 aa12.09□□□□□ -0.47
TDP1-210ENST00000554976 STK26Q9P289 416 aa12.09□□□□□ -0.47
TDP1-210ENST00000554976 RGPD8O14715 1765 aaPredicted RBP12.09□□□□□ -0.47
TDP1-210ENST00000554976 PRKCSHP14314 528 aaPredicted RBP12.08□□□□□ -0.47
TDP1-210ENST00000554976 CABP2Q9NPB3 220 aa12.08□□□□□ -0.48
TDP1-210ENST00000554976 USP54Q70EL1 1684 aa12.08□□□□□ -0.48
TDP1-210ENST00000554976 NWD1Q149M9 1564 aa12.08□□□□□ -0.48
TDP1-210ENST00000554976 HDGFP51858 240 aaKnown RBP12.08□□□□□ -0.48
TDP1-210ENST00000554976 COL3A1P02461 1466 aaPredicted RBP12.07□□□□□ -0.48
TDP1-210ENST00000554976 MARF1Q9Y4F3 1742 aaKnown RBP12.07□□□□□ -0.48
TDP1-210ENST00000554976 WAPLQ7Z5K2 1190 aa12.06□□□□□ -0.48
TDP1-210ENST00000554976 TMC1Q8TDI8 760 aa12.06□□□□□ -0.48
TDP1-210ENST00000554976 SMG6Q86US8 1419 aaKnown RBP12.06□□□□□ -0.48
TDP1-210ENST00000554976 MINK1Q8N4C8 1332 aaPredicted RBP12.05□□□□□ -0.48
TDP1-210ENST00000554976 POLR3AO14802 1390 aaPredicted RBP12.05□□□□□ -0.48
TDP1-210ENST00000554976 NKTRP30414 1462 aaKnown RBP12.05□□□□□ -0.48
TDP1-210ENST00000554976 CDK19Q9BWU1 502 aa12.05□□□□□ -0.48
TDP1-210ENST00000554976 SENP3Q9H4L4 574 aaPredicted RBP12.05□□□□□ -0.48
TDP1-210ENST00000554976 CNGB1Q14028 1251 aaPredicted RBP12.04□□□□□ -0.48
TDP1-210ENST00000554976 PIK3R4Q99570 1358 aa12.04□□□□□ -0.48
TDP1-210ENST00000554976 IQSEC2Q5JU85 1478 aa12.03□□□□□ -0.48
TDP1-210ENST00000554976 SAFB2Q14151 953 aaKnown RBP eCLIP12.03□□□□□ -0.48
TDP1-210ENST00000554976 TBX22Q9Y458 520 aa12.03□□□□□ -0.48
TDP1-210ENST00000554976 TXNDC2Q86VQ3 553 aa12.03□□□□□ -0.48
TDP1-210ENST00000554976 THEMISQ8N1K5 641 aaPredicted RBP12.03□□□□□ -0.48
TDP1-210ENST00000554976 POGKQ9P215 609 aa12.03□□□□□ -0.48
TDP1-210ENST00000554976 WASLO00401 505 aaPredicted RBP12.02□□□□□ -0.49
TDP1-210ENST00000554976 MAP2P11137 1827 aaKnown RBP12.02□□□□□ -0.49
TDP1-210ENST00000554976 PPIP5K1Q6PFW1 1433 aa12.02□□□□□ -0.49
TDP1-210ENST00000554976 PRR36Q9H6K5 1346 aa12.01□□□□□ -0.49
TDP1-210ENST00000554976 CGNL1Q0VF96 1302 aa12.01□□□□□ -0.49
TDP1-210ENST00000554976 STRCP1A6NGW2 1772 aa12□□□□□ -0.49
TDP1-210ENST00000554976 EDC4Q6P2E9 1401 aaKnown RBP12□□□□□ -0.49
TDP1-210ENST00000554976 SSH2Q76I76 1423 aa12□□□□□ -0.49
TDP1-210ENST00000554976 SRPK2P78362 688 aaKnown RBP11.99□□□□□ -0.49
TDP1-210ENST00000554976 EID1Q9Y6B2 187 aa11.99□□□□□ -0.49
TDP1-210ENST00000554976 SUPT16HQ9Y5B9 1047 aaKnown RBP11.99□□□□□ -0.49
TDP1-210ENST00000554976 PIK3C2AO00443 1686 aa11.98□□□□□ -0.49
TDP1-210ENST00000554976 ZNF521Q96K83 1311 aa11.98□□□□□ -0.49
TDP1-210ENST00000554976 LRRC7Q96NW7 1537 aa11.98□□□□□ -0.49
TDP1-210ENST00000554976 RNF123Q5XPI4 1314 aa11.98□□□□□ -0.49
TDP1-210ENST00000554976 ADAMTS8Q9UP79 889 aa11.97□□□□□ -0.49
TDP1-210ENST00000554976 CABP1Q9NZU7 370 aa11.97□□□□□ -0.49
TDP1-210ENST00000554976 PNPLA6Q8IY17 1366 aa11.97□□□□□ -0.49
TDP1-210ENST00000554976 FYB1O15117 783 aa11.97□□□□□ -0.49
TDP1-210ENST00000554976 PEAK1Q9H792 1746 aa11.97□□□□□ -0.49
TDP1-210ENST00000554976 RGPD1P0DJD0 1748 aa11.96□□□□□ -0.49
TDP1-210ENST00000554976 SLC26A8Q96RN1 970 aa11.96□□□□□ -0.49
TDP1-210ENST00000554976 ANKARQ7Z5J8 1434 aa11.96□□□□□ -0.5
TDP1-210ENST00000554976 NPHP4O75161 1426 aaPredicted RBP11.95□□□□□ -0.5
TDP1-210ENST00000554976 TERF2IPQ9NYB0 399 aa11.95□□□□□ -0.5
TDP1-210ENST00000554976 AMOTL2Q9Y2J4 779 aa11.95□□□□□ -0.5
TDP1-210ENST00000554976 NUDT16Q96DE0 195 aaKnown RBP11.95□□□□□ -0.5
TDP1-210ENST00000554976 NUDCQ9Y266 331 aa11.95□□□□□ -0.5
TDP1-210ENST00000554976 XIRP1Q702N8 1843 aaKnown RBP11.94□□□□□ -0.5
TDP1-210ENST00000554976 STRCQ7RTU9 1775 aa11.94□□□□□ -0.5
TDP1-210ENST00000554976 MORC1Q86VD1 984 aa11.94□□□□□ -0.5
TDP1-210ENST00000554976 OVOS2A0A0J9YW53 1432 aa11.94□□□□□ -0.5
TDP1-210ENST00000554976 OVOS2Q6IE36 1432 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms