RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 IRX6P78412 446 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-203ENST00000547825 CAMSAP1Q5T5Y3 1602 aa7.64□□□□□ -1.19
LIMA1-203ENST00000547825 GRXCR2A6NFK2 248 aa7.64□□□□□ -1.19
LIMA1-203ENST00000547825 BCL11AQ9H165 835 aa7.64□□□□□ -1.19
LIMA1-203ENST00000547825 PIK3C2BO00750 1634 aa7.64□□□□□ -1.19
LIMA1-203ENST00000547825 PIP4P2Q8N4L2 257 aa7.64□□□□□ -1.19
LIMA1-203ENST00000547825 DDX10Q13206 875 aaKnown RBP7.63□□□□□ -1.19
LIMA1-203ENST00000547825 CCDC102AQ96A19 550 aa7.63□□□□□ -1.19
LIMA1-203ENST00000547825 ANP32EQ9BTT0 268 aa7.63□□□□□ -1.19
LIMA1-203ENST00000547825 LMTK2Q8IWU2 1503 aa7.63□□□□□ -1.19
LIMA1-203ENST00000547825 HIRIP3Q9BW71 556 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-203ENST00000547825 CD44P16070 742 aaKnown RBP7.63□□□□□ -1.19
LIMA1-203ENST00000547825 PARP9Q8IXQ6 854 aa7.62□□□□□ -1.19
LIMA1-203ENST00000547825 MYOM3Q5VTT5 1437 aa7.62□□□□□ -1.19
LIMA1-203ENST00000547825 POLR1AO95602 1720 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-203ENST00000547825 SCAPERQ9BY12 1400 aa7.62□□□□□ -1.19
LIMA1-203ENST00000547825 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.61□□□□□ -1.19
LIMA1-203ENST00000547825 IQGAP3Q86VI3 1631 aa7.61□□□□□ -1.19
LIMA1-203ENST00000547825 FAM50AQ14320 339 aaKnown RBP7.61□□□□□ -1.19
LIMA1-203ENST00000547825 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.61□□□□□ -1.192e-8■■■■■ 37.9
LIMA1-203ENST00000547825 CCDC141Q6ZP82 1450 aa7.61□□□□□ -1.19
LIMA1-203ENST00000547825 LMTK3Q96Q04 1460 aa7.61□□□□□ -1.19
LIMA1-203ENST00000547825 APBB1O00213 710 aa7.61□□□□□ -1.19
LIMA1-203ENST00000547825 PTPRMP28827 1452 aa7.61□□□□□ -1.19
LIMA1-203ENST00000547825 NUTM2FA1L443 756 aa7.6□□□□□ -1.19
LIMA1-203ENST00000547825 ANP32CO43423 234 aa7.6□□□□□ -1.19
LIMA1-203ENST00000547825 SPATA31D1Q6ZQQ2 1576 aa7.6□□□□□ -1.19
LIMA1-203ENST00000547825 UBR1Q8IWV7 1749 aa7.59□□□□□ -1.19
LIMA1-203ENST00000547825 EIF5BO60841 1220 aaKnown RBP7.59□□□□□ -1.19
LIMA1-203ENST00000547825 RRBP1Q9P2E9 1410 aaKnown RBP7.59□□□□□ -1.19
LIMA1-203ENST00000547825 PLEKHD1A6NEE1 506 aa7.59□□□□□ -1.19
LIMA1-203ENST00000547825 TTLL13PA6NNM8 815 aa7.59□□□□□ -1.2
LIMA1-203ENST00000547825 PRIM1P49642 420 aaKnown RBP7.59□□□□□ -1.2
LIMA1-203ENST00000547825 ILDR1Q86SU0 546 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-203ENST00000547825 CLUAP1Q96AJ1 413 aa7.58□□□□□ -1.2
LIMA1-203ENST00000547825 DUOX2Q9NRD8 1548 aa7.58□□□□□ -1.2
LIMA1-203ENST00000547825 E9PCH4 1651 aa7.58□□□□□ -1.2
LIMA1-203ENST00000547825 TET3O43151 1660 aa7.58□□□□□ -1.2
LIMA1-203ENST00000547825 IRF6O14896 467 aa7.58□□□□□ -1.2
LIMA1-203ENST00000547825 IFT172Q9UG01 1749 aa7.57□□□□□ -1.2
LIMA1-203ENST00000547825 NPM2Q86SE8 214 aaKnown RBP7.57□□□□□ -1.2
LIMA1-203ENST00000547825 REPIN1Q9BWE0 567 aaKnown RBP7.57□□□□□ -1.2
LIMA1-203ENST00000547825 ABCC5O15440 1437 aa7.57□□□□□ -1.2
LIMA1-203ENST00000547825 FGD6Q6ZV73 1430 aa7.57□□□□□ -1.2
LIMA1-203ENST00000547825 MICALL2Q8IY33 904 aa7.57□□□□□ -1.2
LIMA1-203ENST00000547825 UPF1Q92900 1129 aaKnown RBP eCLIP7.57□□□□□ -1.2
LIMA1-203ENST00000547825 MYO5BQ9ULV0 1848 aa7.57□□□□□ -1.2
LIMA1-203ENST00000547825 XIRP1Q702N8 1843 aaKnown RBP7.57□□□□□ -1.2
LIMA1-203ENST00000547825 NEURL4Q96JN8 1562 aa7.57□□□□□ -1.2
LIMA1-203ENST00000547825 CHRDL2Q6WN34 429 aa7.57□□□□□ -1.2
LIMA1-203ENST00000547825 DDX12PQ92771 950 aa7.57□□□□□ -1.2
LIMA1-203ENST00000547825 ABCC3O15438 1527 aa7.56□□□□□ -1.2
LIMA1-203ENST00000547825 OSBPP22059 807 aa7.56□□□□□ -1.2
LIMA1-203ENST00000547825 SETD1AO15047 1707 aaKnown RBP7.56□□□□□ -1.2
LIMA1-203ENST00000547825 SETD1BQ9UPS6 1966 aaKnown RBP7.56□□□□□ -1.2
LIMA1-203ENST00000547825 DAPK1P53355 1430 aa7.56□□□□□ -1.2
LIMA1-203ENST00000547825 A2MP01023 1474 aa7.56□□□□□ -1.2
LIMA1-203ENST00000547825 SENP3-EIF4A1A0A087X0R7 540 aa7.56□□□□□ -1.2
LIMA1-203ENST00000547825 ONECUT3O60422 494 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-203ENST00000547825 MAP2K5Q13163 448 aa7.56□□□□□ -1.2
LIMA1-203ENST00000547825 PLPP6Q8IY26 295 aa7.56□□□□□ -1.2
LIMA1-203ENST00000547825 SYNMO15061 1565 aa7.56□□□□□ -1.2
LIMA1-203ENST00000547825 PTPRKQ15262 1439 aa7.55□□□□□ -1.2
LIMA1-203ENST00000547825 C2orf72A6NCS6 295 aa7.55□□□□□ -1.2
LIMA1-203ENST00000547825 FOXK1P85037 733 aa7.55□□□□□ -1.2
LIMA1-203ENST00000547825 STRCP1A6NGW2 1772 aa7.55□□□□□ -1.2
LIMA1-203ENST00000547825 HNRNPUQ00839 825 aaKnown RBP eCLIP7.55□□□□□ -1.2
LIMA1-203ENST00000547825 ERBINQ96RT1 1412 aa7.55□□□□□ -1.2
LIMA1-203ENST00000547825 TRIM35Q9UPQ4 493 aa7.55□□□□□ -1.2
LIMA1-203ENST00000547825 MS4A1P11836 297 aa7.54□□□□□ -1.2
LIMA1-203ENST00000547825 MINK1Q8N4C8 1332 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-203ENST00000547825 BMP2KQ9NSY1 1161 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-203ENST00000547825 NPATQ14207 1427 aa7.54□□□□□ -1.2
LIMA1-203ENST00000547825 EFCAB6Q5THR3 1501 aa7.54□□□□□ -1.2
LIMA1-203ENST00000547825 RAPGEF3O95398 923 aa7.54□□□□□ -1.2
LIMA1-203ENST00000547825 TTLL12Q14166 644 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-203ENST00000547825 SPDYE16A6NNV3 312 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-203ENST00000547825 AMHR2Q16671 573 aa7.53□□□□□ -1.2
LIMA1-203ENST00000547825 SPHKAPQ2M3C7 1700 aa7.53□□□□□ -1.2
LIMA1-203ENST00000547825 PDCD7Q8N8D1 485 aaKnown RBP7.53□□□□□ -1.2
LIMA1-203ENST00000547825 UGGT1Q9NYU2 1555 aa7.53□□□□□ -1.2
LIMA1-203ENST00000547825 ARHGAP31Q2M1Z3 1444 aa7.52□□□□□ -1.2
LIMA1-203ENST00000547825 GNPATO15228 680 aa7.52□□□□□ -1.21
LIMA1-203ENST00000547825 TMC2Q8TDI7 906 aa7.52□□□□□ -1.21
LIMA1-203ENST00000547825 DDRGK1Q96HY6 314 aa7.52□□□□□ -1.21
LIMA1-203ENST00000547825 PZPP20742 1482 aa7.52□□□□□ -1.21
LIMA1-203ENST00000547825 EFCAB2Q5VUJ9 269 aa7.52□□□□□ -1.21
LIMA1-203ENST00000547825 CEP170BQ9Y4F5 1589 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-203ENST00000547825 CCNB3Q8WWL7 1395 aa7.52□□□□□ -1.21
LIMA1-203ENST00000547825 CCDC82Q8N4S0 544 aa7.51□□□□□ -1.21
LIMA1-203ENST00000547825 DHX29Q7Z478 1369 aaKnown RBP7.51□□□□□ -1.21
LIMA1-203ENST00000547825 RAB3GAP2Q9H2M9 1393 aa7.51□□□□□ -1.21
LIMA1-203ENST00000547825 MTUS2Q5JR59 1369 aa7.51□□□□□ -1.21
LIMA1-203ENST00000547825 TMEM131LA2VDJ0 1609 aa7.51□□□□□ -1.21
LIMA1-203ENST00000547825 MAP3K9P80192 1104 aa7.5□□□□□ -1.21
LIMA1-203ENST00000547825 ROCK1Q13464 1354 aa7.5□□□□□ -1.21
LIMA1-203ENST00000547825 NCOA1Q15788 1441 aa7.5□□□□□ -1.21
LIMA1-203ENST00000547825 ZNF644Q9H582 1327 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-203ENST00000547825 GIGYF2Q6Y7W6 1299 aaKnown RBP7.5□□□□□ -1.21
LIMA1-203ENST00000547825 FAM9BQ8IZU0 186 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms