RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 FAM135BQ49AJ0 1406 aa6.74□□□□□ -1.33
SNHG1-220ENST00000544550 PZPP20742 1482 aa6.73□□□□□ -1.33
SNHG1-220ENST00000544550 SYCP2Q9BX26 1530 aa6.73□□□□□ -1.33
SNHG1-220ENST00000544550 UGGT1Q9NYU2 1555 aa6.73□□□□□ -1.33
SNHG1-220ENST00000544550 HNRNPMP52272 730 aaKnown RBP eCLIP6.72□□□□□ -1.33
SNHG1-220ENST00000544550 GOLGA2Q08379 1002 aa6.72□□□□□ -1.33
SNHG1-220ENST00000544550 MS4A4AQ96JQ5 239 aa6.72□□□□□ -1.33
SNHG1-220ENST00000544550 MIA2Q96PC5 1412 aa6.72□□□□□ -1.33
SNHG1-220ENST00000544550 INO80Q9ULG1 1556 aaPredicted RBP6.72□□□□□ -1.33
SNHG1-220ENST00000544550 KDM5DQ9BY66 1539 aa6.71□□□□□ -1.33
SNHG1-220ENST00000544550 MKRN3Q13064 507 aaKnown RBP6.71□□□□□ -1.34
SNHG1-220ENST00000544550 FBXO31Q5XUX0 539 aaPredicted RBP6.71□□□□□ -1.34
SNHG1-220ENST00000544550 UPF1Q92900 1129 aaKnown RBP eCLIP6.71□□□□□ -1.34
SNHG1-220ENST00000544550 CFDP1Q9UEE9 299 aaPredicted RBP6.71□□□□□ -1.34
SNHG1-220ENST00000544550 ARHGAP35Q9NRY4 1499 aa6.71□□□□□ -1.34
SNHG1-220ENST00000544550 WASHC2CQ9Y4E1 1318 aa6.71□□□□□ -1.34
SNHG1-220ENST00000544550 IQGAP1P46940 1657 aa6.71□□□□□ -1.34
SNHG1-220ENST00000544550 DHX29Q7Z478 1369 aaKnown RBP6.7□□□□□ -1.34
SNHG1-220ENST00000544550 RTEL1-TNFRSF6BF6WH68 1400 aa6.7□□□□□ -1.34
SNHG1-220ENST00000544550 UBTFP17480 764 aaKnown RBP6.7□□□□□ -1.34
SNHG1-220ENST00000544550 NBR1Q14596 966 aa6.7□□□□□ -1.34
SNHG1-220ENST00000544550 ZNF710Q8N1W2 664 aa6.7□□□□□ -1.34
SNHG1-220ENST00000544550 ERBB3P21860 1342 aa6.7□□□□□ -1.34
SNHG1-220ENST00000544550 GPATCH8Q9UKJ3 1502 aaKnown RBP6.7□□□□□ -1.34
SNHG1-220ENST00000544550 ADGBQ8N7X0 1667 aa6.69□□□□□ -1.34
SNHG1-220ENST00000544550 LRRC9Q6ZRR7 1453 aa6.69□□□□□ -1.34
SNHG1-220ENST00000544550 ZNF772Q68DY9 489 aaPredicted RBP6.69□□□□□ -1.34
SNHG1-220ENST00000544550 CASKIN1Q8WXD9 1431 aa6.68□□□□□ -1.34
SNHG1-220ENST00000544550 RIMBP2O15034 1052 aa6.68□□□□□ -1.34
SNHG1-220ENST00000544550 KIF3BO15066 747 aa6.68□□□□□ -1.34
SNHG1-220ENST00000544550 PRKCSHP14314 528 aaPredicted RBP6.68□□□□□ -1.34
SNHG1-220ENST00000544550 HOXB1P14653 301 aaPredicted RBP6.68□□□□□ -1.34
SNHG1-220ENST00000544550 WDR70Q9NW82 654 aa6.68□□□□□ -1.34
SNHG1-220ENST00000544550 CCNB3Q8WWL7 1395 aa6.68□□□□□ -1.34
SNHG1-220ENST00000544550 JCADQ9P266 1359 aa6.68□□□□□ -1.34
SNHG1-220ENST00000544550 CDC42BPAQ5VT25 1732 aa6.67□□□□□ -1.34
SNHG1-220ENST00000544550 G3V3G9 751 aa6.67□□□□□ -1.34
SNHG1-220ENST00000544550 DOK7Q18PE1 504 aa6.67□□□□□ -1.34
SNHG1-220ENST00000544550 PDCD7Q8N8D1 485 aaKnown RBP6.67□□□□□ -1.34
SNHG1-220ENST00000544550 SCAF11Q99590 1463 aaKnown RBP6.66□□□□□ -1.34
SNHG1-220ENST00000544550 MEX3CQ5U5Q3 659 aaKnown RBP6.66□□□□□ -1.34
SNHG1-220ENST00000544550 EID1Q9Y6B2 187 aa6.66□□□□□ -1.34
SNHG1-220ENST00000544550 SPATA31A6Q5VVP1 1343 aa6.66□□□□□ -1.34
SNHG1-220ENST00000544550 SETD1AO15047 1707 aaKnown RBP6.65□□□□□ -1.34
SNHG1-220ENST00000544550 RXRBP28702 533 aa6.65□□□□□ -1.34
SNHG1-220ENST00000544550 RSPH4AQ5TD94 716 aa6.65□□□□□ -1.34
SNHG1-220ENST00000544550 FYCO1Q9BQS8 1478 aa6.65□□□□□ -1.35
SNHG1-220ENST00000544550 CDK12Q9NYV4 1490 aaPredicted RBP6.65□□□□□ -1.35
SNHG1-220ENST00000544550 STRCP1A6NGW2 1772 aa6.64□□□□□ -1.35
SNHG1-220ENST00000544550 TPRNQ4KMQ1 711 aa6.64□□□□□ -1.35
SNHG1-220ENST00000544550 TXNDC2Q86VQ3 553 aa6.64□□□□□ -1.35
SNHG1-220ENST00000544550 KCNV2Q8TDN2 545 aa6.64□□□□□ -1.35
SNHG1-220ENST00000544550 TRIM52Q96A61 297 aa6.64□□□□□ -1.35
SNHG1-220ENST00000544550 TMEM94Q12767 1356 aa6.64□□□□□ -1.35
SNHG1-220ENST00000544550 FGD6Q6ZV73 1430 aa6.64□□□□□ -1.35
SNHG1-220ENST00000544550 MBD5Q9P267 1494 aa6.64□□□□□ -1.35
SNHG1-220ENST00000544550 SLIT1O75093 1534 aa6.63□□□□□ -1.35
SNHG1-220ENST00000544550 KCNA6P17658 529 aa6.63□□□□□ -1.35
SNHG1-220ENST00000544550 MSH6P52701 1360 aa6.63□□□□□ -1.35
SNHG1-220ENST00000544550 ZC3H13Q5T200 1668 aaKnown RBP6.63□□□□□ -1.35
SNHG1-220ENST00000544550 LRRIQ1Q96JM4 1722 aa6.63□□□□□ -1.35
SNHG1-220ENST00000544550 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.63□□□□□ -1.35
SNHG1-220ENST00000544550 ARHGAP23Q9P227 1491 aa6.63□□□□□ -1.35
SNHG1-220ENST00000544550 ROBO1Q9Y6N7 1651 aa6.63□□□□□ -1.35
SNHG1-220ENST00000544550 ERVK-7P63135 1459 aa6.62□□□□□ -1.35
SNHG1-220ENST00000544550 CCDC141Q6ZP82 1450 aa6.62□□□□□ -1.35
SNHG1-220ENST00000544550 MTUS2Q5JR59 1369 aa6.62□□□□□ -1.35
SNHG1-220ENST00000544550 PDE4AP27815 886 aa6.62□□□□□ -1.35
SNHG1-220ENST00000544550 LTKP29376 864 aa6.62□□□□□ -1.35
SNHG1-220ENST00000544550 PROSER2Q86WR7 435 aaPredicted RBP6.62□□□□□ -1.35
SNHG1-220ENST00000544550 CRISPLD2Q9H0B8 497 aa6.62□□□□□ -1.35
SNHG1-220ENST00000544550 ABCC3O15438 1527 aa6.61□□□□□ -1.35
SNHG1-220ENST00000544550 NKTRP30414 1462 aaKnown RBP6.61□□□□□ -1.35
SNHG1-220ENST00000544550 MFSD10Q14728 455 aa6.61□□□□□ -1.35
SNHG1-220ENST00000544550 SLAIN2Q9P270 581 aa6.61□□□□□ -1.35
SNHG1-220ENST00000544550 PRDM15P57071 1507 aaPredicted RBP6.6□□□□□ -1.35
SNHG1-220ENST00000544550 MAP3K1Q13233 1512 aa6.6□□□□□ -1.35
SNHG1-220ENST00000544550 TMEM2Q9UHN6 1383 aa6.6□□□□□ -1.35
SNHG1-220ENST00000544550 TSPY4P0CV99 314 aa6.6□□□□□ -1.35
SNHG1-220ENST00000544550 TSPY10P0CW01 314 aa6.6□□□□□ -1.35
SNHG1-220ENST00000544550 HOXB3P14651 431 aaPredicted RBP6.6□□□□□ -1.35
SNHG1-220ENST00000544550 E2F4Q16254 413 aa6.6□□□□□ -1.35
SNHG1-220ENST00000544550 ZNF687Q8N1G0 1237 aa6.6□□□□□ -1.35
SNHG1-220ENST00000544550 LARP6Q9BRS8 491 aaKnown RBP6.6□□□□□ -1.35
SNHG1-220ENST00000544550 ZSWIM6Q9HCJ5 1215 aa6.6□□□□□ -1.35
SNHG1-220ENST00000544550 NCOA2Q15596 1464 aa6.6□□□□□ -1.35
SNHG1-220ENST00000544550 ZNF644Q9H582 1327 aaPredicted RBP6.59□□□□□ -1.35
SNHG1-220ENST00000544550 LRP6O75581 1613 aa6.59□□□□□ -1.35
SNHG1-220ENST00000544550 VARS2Q5ST30 1063 aaKnown RBP6.59□□□□□ -1.35
SNHG1-220ENST00000544550 ARHGEF1Q92888 912 aaKnown RBP6.59□□□□□ -1.35
SNHG1-220ENST00000544550 CAMSAP2Q08AD1 1489 aa6.59□□□□□ -1.36
SNHG1-220ENST00000544550 PHLPP1O60346 1717 aa6.59□□□□□ -1.36
SNHG1-220ENST00000544550 UBR1Q8IWV7 1749 aa6.59□□□□□ -1.36
SNHG1-220ENST00000544550 NCOA3Q9Y6Q9 1424 aa6.59□□□□□ -1.36
SNHG1-220ENST00000544550 TIAM1Q13009 1591 aa6.58□□□□□ -1.36
SNHG1-220ENST00000544550 DPY19L2Q6NUT2 758 aa6.58□□□□□ -1.36
SNHG1-220ENST00000544550 ARHGAP31Q2M1Z3 1444 aa6.58□□□□□ -1.36
SNHG1-220ENST00000544550 ATAD2Q6PL18 1390 aa6.57□□□□□ -1.36
SNHG1-220ENST00000544550 XIRP1Q702N8 1843 aaKnown RBP6.57□□□□□ -1.36
SNHG1-220ENST00000544550 NUTM2BA6NNL0 878 aaPredicted RBP6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms