RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 LRRC9Q6ZRR7 1453 aa13.07□□□□□ -0.32
USP48-212ENST00000527823 COL16A1Q07092 1604 aaPredicted RBP13.06□□□□□ -0.32
USP48-212ENST00000527823 ATMINO43313 823 aaPredicted RBP13.06□□□□□ -0.32
USP48-212ENST00000527823 DUOX2Q9NRD8 1548 aa13.05□□□□□ -0.32
USP48-212ENST00000527823 LTKP29376 864 aa13.05□□□□□ -0.32
USP48-212ENST00000527823 TET3O43151 1660 aa13.05□□□□□ -0.32
USP48-212ENST00000527823 ARHGAP31Q2M1Z3 1444 aa13.05□□□□□ -0.32
USP48-212ENST00000527823 NKTRP30414 1462 aaKnown RBP13.04□□□□□ -0.32
USP48-212ENST00000527823 EFCAB6Q5THR3 1501 aa13.04□□□□□ -0.32
USP48-212ENST00000527823 SOX12O15370 315 aa13.04□□□□□ -0.32
USP48-212ENST00000527823 MKRN3Q13064 507 aaKnown RBP13.04□□□□□ -0.32
USP48-212ENST00000527823 DCBLD2Q96PD2 775 aa13.04□□□□□ -0.32
USP48-212ENST00000527823 PHF8Q9UPP1 1060 aa13.04□□□□□ -0.32
USP48-212ENST00000527823 TMEM94Q12767 1356 aa13.04□□□□□ -0.32
USP48-212ENST00000527823 ASTLQ6HA08 431 aaPredicted RBP13.03□□□□□ -0.32
USP48-212ENST00000527823 ADGRB3O60242 1522 aa13.03□□□□□ -0.32
USP48-212ENST00000527823 RSPH4AQ5TD94 716 aa13.02□□□□□ -0.33
USP48-212ENST00000527823 LRP6O75581 1613 aa13.02□□□□□ -0.33
USP48-212ENST00000527823 MYO5BQ9ULV0 1848 aa13.02□□□□□ -0.33
USP48-212ENST00000527823 RYDENQ9NUL5 291 aaKnown RBP13.01□□□□□ -0.33
USP48-212ENST00000527823 TMEM2Q9UHN6 1383 aa13.01□□□□□ -0.33
USP48-212ENST00000527823 SHPRHQ149N8 1683 aa13□□□□□ -0.33
USP48-212ENST00000527823 NLRP6P59044 892 aa13□□□□□ -0.33
USP48-212ENST00000527823 ERBINQ96RT1 1412 aa12.99□□□□□ -0.33
USP48-212ENST00000527823 FBXO22Q8NEZ5 403 aa12.99□□□□□ -0.33
USP48-212ENST00000527823 TSHZ2Q9NRE2 1034 aa12.99□□□□□ -0.33
USP48-212ENST00000527823 CHD2O14647 1828 aaKnown RBP12.99□□□□□ -0.33
USP48-212ENST00000527823 LMTK2Q8IWU2 1503 aa12.98□□□□□ -0.33
USP48-212ENST00000527823 TXNDC2Q86VQ3 553 aa12.98□□□□□ -0.33
USP48-212ENST00000527823 GCC2Q8IWJ2 1684 aa12.98□□□□□ -0.33
USP48-212ENST00000527823 TSPY4P0CV99 314 aa12.97□□□□□ -0.33
USP48-212ENST00000527823 TSPY10P0CW01 314 aa12.97□□□□□ -0.33
USP48-212ENST00000527823 PELP1Q8IZL8 1130 aaKnown RBP12.97□□□□□ -0.33
USP48-212ENST00000527823 KIF15Q9NS87 1388 aa12.96□□□□□ -0.33
USP48-212ENST00000527823 AHDC1Q5TGY3 1603 aaPredicted RBP12.96□□□□□ -0.33
USP48-212ENST00000527823 MYOM3Q5VTT5 1437 aa12.96□□□□□ -0.34
USP48-212ENST00000527823 SRCAPQ6ZRS2 3230 aa12.95□□□□□ -0.34
USP48-212ENST00000527823 POTEIP0CG38 1075 aa12.95□□□□□ -0.34
USP48-212ENST00000527823 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.95□□□□□ -0.344e-7■■□□□ 14.3
USP48-212ENST00000527823 JCADQ9P266 1359 aa12.94□□□□□ -0.34
USP48-212ENST00000527823 RBM33Q96EV2 1170 aaKnown RBP12.94□□□□□ -0.34
USP48-212ENST00000527823 MS4A4AQ96JQ5 239 aa12.94□□□□□ -0.34
USP48-212ENST00000527823 PTPN23Q9H3S7 1636 aa12.94□□□□□ -0.34
USP48-212ENST00000527823 DIP2AQ14689 1571 aa12.94□□□□□ -0.34
USP48-212ENST00000527823 PPP1R37O75864 691 aa12.93□□□□□ -0.34
USP48-212ENST00000527823 KCNA6P17658 529 aa12.93□□□□□ -0.34
USP48-212ENST00000527823 EID1Q9Y6B2 187 aa12.93□□□□□ -0.34
USP48-212ENST00000527823 NOS1P29475 1434 aa12.93□□□□□ -0.34
USP48-212ENST00000527823 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.93□□□□□ -0.34
USP48-212ENST00000527823 MSH6P52701 1360 aa12.92□□□□□ -0.34
USP48-212ENST00000527823 ZFYVE9O95405 1425 aa12.91□□□□□ -0.34
USP48-212ENST00000527823 FGD6Q6ZV73 1430 aa12.91□□□□□ -0.34
USP48-212ENST00000527823 VPS8Q8N3P4 1428 aa12.91□□□□□ -0.34
USP48-212ENST00000527823 ABCC5O15440 1437 aa12.9□□□□□ -0.34
USP48-212ENST00000527823 SLC26A8Q96RN1 970 aa12.9□□□□□ -0.34
USP48-212ENST00000527823 TMEM131LA2VDJ0 1609 aa12.9□□□□□ -0.34
USP48-212ENST00000527823 DAPK1P53355 1430 aa12.88□□□□□ -0.35
USP48-212ENST00000527823 NHSL1Q5SYE7 1610 aa12.88□□□□□ -0.35
USP48-212ENST00000527823 IER5LQ5T953 404 aa12.88□□□□□ -0.35
USP48-212ENST00000527823 PROSER2Q86WR7 435 aaPredicted RBP12.88□□□□□ -0.35
USP48-212ENST00000527823 UPF1Q92900 1129 aaKnown RBP eCLIP12.88□□□□□ -0.35
USP48-212ENST00000527823 CDK12Q9NYV4 1490 aaPredicted RBP12.87□□□□□ -0.35
USP48-212ENST00000527823 IRX5P78411 483 aaPredicted RBP12.87□□□□□ -0.35
USP48-212ENST00000527823 PLEKHG1Q9ULL1 1385 aa12.86□□□□□ -0.35
USP48-212ENST00000527823 IDI1Q13907 227 aa12.86□□□□□ -0.35
USP48-212ENST00000527823 DPY19L2Q6NUT2 758 aa12.86□□□□□ -0.35
USP48-212ENST00000527823 KANK1Q14678 1352 aa12.85□□□□□ -0.35
USP48-212ENST00000527823 SPATA31A6Q5VVP1 1343 aa12.85□□□□□ -0.35
USP48-212ENST00000527823 XRN1Q8IZH2 1706 aaKnown RBP12.85□□□□□ -0.35
USP48-212ENST00000527823 RPRD2Q5VT52 1461 aaKnown RBP12.85□□□□□ -0.35
USP48-212ENST00000527823 KANK4Q5T7N3 995 aaPredicted RBP12.84□□□□□ -0.35
USP48-212ENST00000527823 PDCD7Q8N8D1 485 aaKnown RBP12.84□□□□□ -0.35
USP48-212ENST00000527823 SLC39A7Q92504 469 aa12.84□□□□□ -0.35
USP48-212ENST00000527823 TRIM52Q96A61 297 aa12.84□□□□□ -0.35
USP48-212ENST00000527823 OCEL1Q9H607 264 aa12.84□□□□□ -0.35
USP48-212ENST00000527823 SLAIN2Q9P270 581 aa12.84□□□□□ -0.35
USP48-212ENST00000527823 RGS12O14924 1447 aa12.84□□□□□ -0.35
USP48-212ENST00000527823 ASXL1Q8IXJ9 1541 aa12.83□□□□□ -0.35
USP48-212ENST00000527823 ADAMTS13Q76LX8 1427 aa12.83□□□□□ -0.36
USP48-212ENST00000527823 SEC24BO95487 1268 aa12.83□□□□□ -0.36
USP48-212ENST00000527823 VSIG10Q8N0Z9 540 aa12.83□□□□□ -0.36
USP48-212ENST00000527823 COLQQ9Y215 455 aaPredicted RBP12.83□□□□□ -0.36
USP48-212ENST00000527823 KDM2AQ9Y2K7 1162 aa12.83□□□□□ -0.36
USP48-212ENST00000527823 UNC13BO14795 1591 aa12.82□□□□□ -0.36
USP48-212ENST00000527823 RIMS2Q9UQ26 1411 aa12.82□□□□□ -0.36
USP48-212ENST00000527823 NCOA3Q9Y6Q9 1424 aa12.82□□□□□ -0.36
USP48-212ENST00000527823 NRXN3Q9Y4C0 1643 aa12.82□□□□□ -0.36
USP48-212ENST00000527823 PLCG2P16885 1265 aa12.82□□□□□ -0.36
USP48-212ENST00000527823 RRP7BPQ9NSQ0 103 aa12.82□□□□□ -0.36
USP48-212ENST00000527823 ADGRL2O95490 1459 aa12.82□□□□□ -0.36
USP48-212ENST00000527823 E9PCH4 1651 aa12.82□□□□□ -0.36
USP48-212ENST00000527823 C7P10643 843 aa12.81□□□□□ -0.36
USP48-212ENST00000527823 ZNF772Q68DY9 489 aaPredicted RBP12.81□□□□□ -0.36
USP48-212ENST00000527823 METRNQ9UJH8 293 aa12.81□□□□□ -0.36
USP48-212ENST00000527823 EP400Q96L91 3159 aa12.81□□□□□ -0.36
USP48-212ENST00000527823 NALCNQ8IZF0 1738 aa12.8□□□□□ -0.36
USP48-212ENST00000527823 TRPM2O94759 1503 aa12.8□□□□□ -0.36
USP48-212ENST00000527823 MEX3CQ5U5Q3 659 aaKnown RBP12.8□□□□□ -0.36
USP48-212ENST00000527823 CADPS2Q86UW7 1296 aa12.8□□□□□ -0.36
USP48-212ENST00000527823 POTEFA5A3E0 1075 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms