RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 CC2D1BQ5T0F9 858 aaKnown RBP18.17■□□□□ 0.5
LIMS1-205ENST00000410093 IDI1Q13907 227 aa18.16■□□□□ 0.5
LIMS1-205ENST00000410093 EID1Q9Y6B2 187 aa18.16■□□□□ 0.5
LIMS1-205ENST00000410093 USP32Q8NFA0 1604 aa18.16■□□□□ 0.5
LIMS1-205ENST00000410093 MYO5BQ9ULV0 1848 aa18.15■□□□□ 0.5
LIMS1-205ENST00000410093 CNGB1Q14028 1251 aaPredicted RBP18.14■□□□□ 0.49
LIMS1-205ENST00000410093 RNF123Q5XPI4 1314 aa18.14■□□□□ 0.49
LIMS1-205ENST00000410093 NINLQ9Y2I6 1382 aa18.13■□□□□ 0.49
LIMS1-205ENST00000410093 NPHP4O75161 1426 aaPredicted RBP18.13■□□□□ 0.49
LIMS1-205ENST00000410093 TXNDC2Q86VQ3 553 aa18.13■□□□□ 0.49
LIMS1-205ENST00000410093 PPP4R2Q9NY27 417 aa18.13■□□□□ 0.49
LIMS1-205ENST00000410093 LTBP4Q8N2S1 1624 aa18.13■□□□□ 0.49
LIMS1-205ENST00000410093 PPP2R1AP30153 589 aa18.12■□□□□ 0.49
LIMS1-205ENST00000410093 EVC2Q86UK5 1308 aa18.11■□□□□ 0.49
LIMS1-205ENST00000410093 NGEFQ8N5V2 710 aa18.1■□□□□ 0.49
LIMS1-205ENST00000410093 MED14O60244 1454 aa18.1■□□□□ 0.49
LIMS1-205ENST00000410093 IQSEC2Q5JU85 1478 aa18.1■□□□□ 0.49
LIMS1-205ENST00000410093 UBR1Q8IWV7 1749 aa18.09■□□□□ 0.49
LIMS1-205ENST00000410093 TRAK1Q9UPV9 953 aa18.08■□□□□ 0.49
LIMS1-205ENST00000410093 NSD2O96028 1365 aa18.07■□□□□ 0.48
LIMS1-205ENST00000410093 WDR43Q15061 677 aaKnown RBP eCLIP18.07■□□□□ 0.48
LIMS1-205ENST00000410093 BCANQ96GW7 911 aa18.06■□□□□ 0.48
LIMS1-205ENST00000410093 TMEM2Q9UHN6 1383 aa18.06■□□□□ 0.48
LIMS1-205ENST00000410093 UBAP1LF5GYI3 381 aa18.05■□□□□ 0.48
LIMS1-205ENST00000410093 LTKP29376 864 aa18.05■□□□□ 0.48
LIMS1-205ENST00000410093 HDGFP51858 240 aaKnown RBP18.05■□□□□ 0.48
LIMS1-205ENST00000410093 DLC1Q96QB1 1528 aa18.05■□□□□ 0.48
LIMS1-205ENST00000410093 SLIT1O75093 1534 aa18.04■□□□□ 0.48
LIMS1-205ENST00000410093 CPS1P31327 1500 aa18.04■□□□□ 0.48
LIMS1-205ENST00000410093 ALKQ9UM73 1620 aa18.03■□□□□ 0.48
LIMS1-205ENST00000410093 ARHGAP23Q9P227 1491 aa18.03■□□□□ 0.48
LIMS1-205ENST00000410093 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.03■□□□□ 0.48
LIMS1-205ENST00000410093 TMEM132EQ6IEE7 984 aa18.02■□□□□ 0.47
LIMS1-205ENST00000410093 POLR3AO14802 1390 aaPredicted RBP18.02■□□□□ 0.47
LIMS1-205ENST00000410093 ANKRD36BQ8N2N9 1353 aa18.02■□□□□ 0.47
LIMS1-205ENST00000410093 TULP4Q9NRJ4 1543 aa18.01■□□□□ 0.47
LIMS1-205ENST00000410093 YTHDC2Q9H6S0 1430 aaKnown RBP18.01■□□□□ 0.47
LIMS1-205ENST00000410093 ATAD2Q6PL18 1390 aa18.01■□□□□ 0.47
LIMS1-205ENST00000410093 CGNL1Q0VF96 1302 aa18.01■□□□□ 0.47
LIMS1-205ENST00000410093 TOM1O60784 492 aa18■□□□□ 0.47
LIMS1-205ENST00000410093 CARD14Q9BXL6 1004 aa18■□□□□ 0.47
LIMS1-205ENST00000410093 NSD3Q9BZ95 1437 aa17.99■□□□□ 0.47
LIMS1-205ENST00000410093 ADAMTS8Q9UP79 889 aa17.98■□□□□ 0.47
LIMS1-205ENST00000410093 SETD1AO15047 1707 aaKnown RBP17.97■□□□□ 0.47
LIMS1-205ENST00000410093 RIMS2Q9UQ26 1411 aa17.97■□□□□ 0.47
LIMS1-205ENST00000410093 TSHZ2Q9NRE2 1034 aa17.97■□□□□ 0.47
LIMS1-205ENST00000410093 RCAN3Q9UKA8 241 aa17.95■□□□□ 0.46
LIMS1-205ENST00000410093 PIP4K2BP78356 416 aa17.94■□□□□ 0.46
LIMS1-205ENST00000410093 NCBP3Q53F19 620 aaKnown RBP17.94■□□□□ 0.46
LIMS1-205ENST00000410093 MORC1Q86VD1 984 aa17.94■□□□□ 0.46
LIMS1-205ENST00000410093 SLC26A8Q96RN1 970 aa17.94■□□□□ 0.46
LIMS1-205ENST00000410093 KNDC1Q76NI1 1749 aa17.94■□□□□ 0.46
LIMS1-205ENST00000410093 ANKRD26Q9UPS8 1709 aa17.94■□□□□ 0.46
LIMS1-205ENST00000410093 SIRT1Q96EB6 747 aa17.93■□□□□ 0.46
LIMS1-205ENST00000410093 ABCC11Q96J66 1382 aa17.93■□□□□ 0.46
LIMS1-205ENST00000410093 SLC12A5Q9H2X9 1139 aa17.93■□□□□ 0.46
LIMS1-205ENST00000410093 TERF2IPQ9NYB0 399 aa17.93■□□□□ 0.46
LIMS1-205ENST00000410093 POGKQ9P215 609 aa17.93■□□□□ 0.46
LIMS1-205ENST00000410093 IRX6P78412 446 aaPredicted RBP17.92■□□□□ 0.46
LIMS1-205ENST00000410093 CFAP53Q96M91 514 aa17.92■□□□□ 0.46
LIMS1-205ENST00000410093 RRP1P56182 461 aaKnown RBP17.91■□□□□ 0.46
LIMS1-205ENST00000410093 NUTM2DQ5VT03 806 aaPredicted RBP17.91■□□□□ 0.46
LIMS1-205ENST00000410093 ZNF521Q96K83 1311 aa17.9■□□□□ 0.46
LIMS1-205ENST00000410093 KCNA6P17658 529 aa17.89■□□□□ 0.45
LIMS1-205ENST00000410093 LRRC7Q96NW7 1537 aa17.89■□□□□ 0.45
LIMS1-205ENST00000410093 PLEKHG1Q9ULL1 1385 aa17.89■□□□□ 0.45
LIMS1-205ENST00000410093 GOLGA2Q08379 1002 aa17.88■□□□□ 0.45
LIMS1-205ENST00000410093 PRAM1Q96QH2 718 aa17.88■□□□□ 0.45
LIMS1-205ENST00000410093 NRXN3Q9Y4C0 1643 aa17.88■□□□□ 0.45
LIMS1-205ENST00000410093 FAM135BQ49AJ0 1406 aa17.88■□□□□ 0.45
LIMS1-205ENST00000410093 SHPRHQ149N8 1683 aa17.88■□□□□ 0.45
LIMS1-205ENST00000410093 SRPK2P78362 688 aaKnown RBP17.88■□□□□ 0.45
LIMS1-205ENST00000410093 TECPR2O15040 1411 aa17.87■□□□□ 0.45
LIMS1-205ENST00000410093 PROSER2Q86WR7 435 aaPredicted RBP17.87■□□□□ 0.45
LIMS1-205ENST00000410093 ATP7BP35670 1465 aa17.87■□□□□ 0.45
LIMS1-205ENST00000410093 HDGFL2Q7Z4V5 671 aaPredicted RBP17.86■□□□□ 0.45
LIMS1-205ENST00000410093 STK26Q9P289 416 aa17.86■□□□□ 0.45
LIMS1-205ENST00000410093 CABP2Q9NPB3 220 aa17.85■□□□□ 0.45
LIMS1-205ENST00000410093 STRCP1A6NGW2 1772 aa17.85■□□□□ 0.45
LIMS1-205ENST00000410093 KIF20BQ96Q89 1820 aa17.84■□□□□ 0.45
LIMS1-205ENST00000410093 TBX22Q9Y458 520 aa17.84■□□□□ 0.45
LIMS1-205ENST00000410093 A0A1W2PP64 1363 aa17.84■□□□□ 0.45
LIMS1-205ENST00000410093 CCDC136Q96JN2 1154 aa17.83■□□□□ 0.45
LIMS1-205ENST00000410093 PLEKHH1Q9ULM0 1364 aa17.83■□□□□ 0.45
LIMS1-205ENST00000410093 TRMT2AQ8IZ69 625 aaKnown RBP17.82■□□□□ 0.44
LIMS1-205ENST00000410093 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.82■□□□□ 0.44
LIMS1-205ENST00000410093 SALL2Q9Y467 1007 aaPredicted RBP17.82■□□□□ 0.44
LIMS1-205ENST00000410093 E9PSI1 815 aa17.82■□□□□ 0.44
LIMS1-205ENST00000410093 CDCA7LQ96GN5 454 aa17.82■□□□□ 0.44
LIMS1-205ENST00000410093 CDK19Q9BWU1 502 aa17.82■□□□□ 0.44
LIMS1-205ENST00000410093 SLFN5Q08AF3 891 aa17.81■□□□□ 0.44
LIMS1-205ENST00000410093 DUSP27Q5VZP5 1158 aa17.81■□□□□ 0.44
LIMS1-205ENST00000410093 RUNDC1Q96C34 613 aa17.81■□□□□ 0.44
LIMS1-205ENST00000410093 TMEM94Q12767 1356 aa17.81■□□□□ 0.44
LIMS1-205ENST00000410093 CD163L1Q9NR16 1453 aa17.81■□□□□ 0.44
LIMS1-205ENST00000410093 MINK1Q8N4C8 1332 aaPredicted RBP17.8■□□□□ 0.44
LIMS1-205ENST00000410093 B4GALNT3Q6L9W6 998 aa17.8■□□□□ 0.44
LIMS1-205ENST00000410093 NKTRP30414 1462 aaKnown RBP17.79■□□□□ 0.44
LIMS1-205ENST00000410093 HSPA1LP34931 641 aa17.79■□□□□ 0.44
LIMS1-205ENST00000410093 CCDC27Q2M243 656 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms