RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ROCK1Q13464 1354 aa13.96□□□□□ -0.17
PTPRF-203ENST00000372407 PCF11O94913 1555 aaKnown RBP13.96□□□□□ -0.17
PTPRF-203ENST00000372407 C22orf23Q9BZE7 217 aa13.96□□□□□ -0.18
PTPRF-203ENST00000372407 BRD4O60885 1362 aaPredicted RBP13.96□□□□□ -0.18
PTPRF-203ENST00000372407 WASHC2AQ641Q2 1341 aa13.96□□□□□ -0.18
PTPRF-203ENST00000372407 FANCAO15360 1455 aa13.95□□□□□ -0.18
PTPRF-203ENST00000372407 UGGT2Q9NYU1 1516 aa13.95□□□□□ -0.18
PTPRF-203ENST00000372407 EIF2S2P20042 333 aaKnown RBP13.95□□□□□ -0.18
PTPRF-203ENST00000372407 INTS3Q68E01 1043 aaKnown RBP13.95□□□□□ -0.18
PTPRF-203ENST00000372407 TXNDC2Q86VQ3 553 aa13.95□□□□□ -0.18
PTPRF-203ENST00000372407 SUPT6HQ7KZ85 1726 aaKnown RBP13.95□□□□□ -0.18
PTPRF-203ENST00000372407 FKBP5Q13451 457 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-203ENST00000372407 MCTP1Q6DN14 999 aa13.94□□□□□ -0.18
PTPRF-203ENST00000372407 PBRM1Q86U86 1689 aa13.94□□□□□ -0.18
PTPRF-203ENST00000372407 IFIT2P09913 472 aaKnown RBP13.94□□□□□ -0.18
PTPRF-203ENST00000372407 AKAP17AQ02040 695 aaKnown RBP13.94□□□□□ -0.18
PTPRF-203ENST00000372407 NFKBIBQ15653 356 aa13.94□□□□□ -0.18
PTPRF-203ENST00000372407 CCDC9Q9Y3X0 531 aaKnown RBP13.94□□□□□ -0.18
PTPRF-203ENST00000372407 ATP10BO94823 1461 aa13.94□□□□□ -0.18
PTPRF-203ENST00000372407 TSR1Q2NL82 804 aaKnown RBP13.94□□□□□ -0.18
PTPRF-203ENST00000372407 RNF20Q5VTR2 975 aa13.93□□□□□ -0.18
PTPRF-203ENST00000372407 TPD52L1Q16890 204 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-203ENST00000372407 SYNE3Q6ZMZ3 975 aa13.93□□□□□ -0.18
PTPRF-203ENST00000372407 ABCA5Q8WWZ7 1642 aa13.93□□□□□ -0.18
PTPRF-203ENST00000372407 ADAMTS8Q9UP79 889 aa13.93□□□□□ -0.18
PTPRF-203ENST00000372407 PES1O00541 588 aaKnown RBP13.92□□□□□ -0.18
PTPRF-203ENST00000372407 MARCH6O60337 910 aa13.92□□□□□ -0.18
PTPRF-203ENST00000372407 PANK1Q8TE04 598 aa13.92□□□□□ -0.18
PTPRF-203ENST00000372407 DNAJC5Q9H3Z4 198 aa13.92□□□□□ -0.18
PTPRF-203ENST00000372407 AKNAQ7Z591 1439 aa13.92□□□□□ -0.18
PTPRF-203ENST00000372407 WDR7Q9Y4E6 1490 aa13.92□□□□□ -0.18
PTPRF-203ENST00000372407 TARBP1Q13395 1621 aaKnown RBP13.92□□□□□ -0.18
PTPRF-203ENST00000372407 TPM1P09493 284 aa13.92□□□□□ -0.18
PTPRF-203ENST00000372407 CCDC141Q6ZP82 1450 aa13.92□□□□□ -0.18
PTPRF-203ENST00000372407 DDX58O95786 925 aaKnown RBP13.92□□□□□ -0.18
PTPRF-203ENST00000372407 HSP90AB4PQ58FF6 505 aa13.91□□□□□ -0.18
PTPRF-203ENST00000372407 TTC5Q8N0Z6 440 aa13.91□□□□□ -0.18
PTPRF-203ENST00000372407 SLC52A1Q9NWF4 448 aa13.91□□□□□ -0.18
PTPRF-203ENST00000372407 A0A0U1RQG5 324 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-203ENST00000372407 CPLX1O14810 134 aa13.91□□□□□ -0.18
PTPRF-203ENST00000372407 BICD2Q8TD16 824 aa13.9□□□□□ -0.18
PTPRF-203ENST00000372407 CEP89Q96ST8 783 aa13.9□□□□□ -0.18
PTPRF-203ENST00000372407 RAPGEF6Q8TEU7 1601 aa13.9□□□□□ -0.18
PTPRF-203ENST00000372407 G3BP1Q13283 466 aaKnown RBP eCLIP13.9□□□□□ -0.184e-7■□□□□ 8.1
PTPRF-203ENST00000372407 NCBP3Q53F19 620 aaKnown RBP13.9□□□□□ -0.18
PTPRF-203ENST00000372407 SMC3Q9UQE7 1217 aa13.9□□□□□ -0.18
PTPRF-203ENST00000372407 KIAA0556O60303 1618 aa13.9□□□□□ -0.18
PTPRF-203ENST00000372407 ANKLE2Q86XL3 938 aa13.89□□□□□ -0.19
PTPRF-203ENST00000372407 CCAR2Q8N163 923 aaKnown RBP13.89□□□□□ -0.19
PTPRF-203ENST00000372407 VPS37CA5D8V6 355 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-203ENST00000372407 FAM43AQ8N2R8 423 aa13.89□□□□□ -0.19
PTPRF-203ENST00000372407 NECTIN2Q92692 538 aa13.89□□□□□ -0.19
PTPRF-203ENST00000372407 ABCC2Q92887 1545 aa13.89□□□□□ -0.19
PTPRF-203ENST00000372407 CEP170Q5SW79 1584 aa13.89□□□□□ -0.19
PTPRF-203ENST00000372407 G3V3G9 751 aa13.89□□□□□ -0.19
PTPRF-203ENST00000372407 DCAF8Q5TAQ9 597 aa13.89□□□□□ -0.19
PTPRF-203ENST00000372407 TCP11L2Q8N4U5 519 aa13.89□□□□□ -0.19
PTPRF-203ENST00000372407 CDCA7LQ96GN5 454 aa13.89□□□□□ -0.19
PTPRF-203ENST00000372407 GGNBP2Q9H3C7 697 aa13.89□□□□□ -0.19
PTPRF-203ENST00000372407 TRIM29Q14134 588 aa13.88□□□□□ -0.19
PTPRF-203ENST00000372407 DAPK1P53355 1430 aa13.88□□□□□ -0.19
PTPRF-203ENST00000372407 ATF3P18847 181 aa13.88□□□□□ -0.19
PTPRF-203ENST00000372407 MTHFSP49914 203 aa13.88□□□□□ -0.19
PTPRF-203ENST00000372407 VSIG10Q8N0Z9 540 aa13.88□□□□□ -0.19
PTPRF-203ENST00000372407 TSPYL4Q9UJ04 414 aa13.88□□□□□ -0.19
PTPRF-203ENST00000372407 ERC2O15083 957 aa13.87□□□□□ -0.19
PTPRF-203ENST00000372407 CDC45O75419 566 aa13.87□□□□□ -0.19
PTPRF-203ENST00000372407 MRE11P49959 708 aa13.87□□□□□ -0.19
PTPRF-203ENST00000372407 HMOX1P09601 288 aa13.87□□□□□ -0.19
PTPRF-203ENST00000372407 TRDNQ13061 729 aa13.87□□□□□ -0.19
PTPRF-203ENST00000372407 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-203ENST00000372407 GPS2Q13227 327 aa13.87□□□□□ -0.19
PTPRF-203ENST00000372407 ZNF592Q92610 1267 aa13.86□□□□□ -0.19
PTPRF-203ENST00000372407 IPO7O95373 1038 aaKnown RBP13.86□□□□□ -0.19
PTPRF-203ENST00000372407 NUP153P49790 1475 aaKnown RBP13.86□□□□□ -0.19
PTPRF-203ENST00000372407 CTTNBP2Q8WZ74 1663 aa13.86□□□□□ -0.19
PTPRF-203ENST00000372407 PDE3AQ14432 1141 aa13.86□□□□□ -0.19
PTPRF-203ENST00000372407 FAM13BQ9NYF5 915 aa13.85□□□□□ -0.19
PTPRF-203ENST00000372407 PLCH2O75038 1416 aa13.85□□□□□ -0.19
PTPRF-203ENST00000372407 CAMSAP2Q08AD1 1489 aa13.85□□□□□ -0.19
PTPRF-203ENST00000372407 APPP05067 770 aa13.85□□□□□ -0.19
PTPRF-203ENST00000372407 PROSER2Q86WR7 435 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-203ENST00000372407 TPM2P07951 284 aa13.84□□□□□ -0.19
PTPRF-203ENST00000372407 SASS6Q6UVJ0 657 aa13.84□□□□□ -0.19
PTPRF-203ENST00000372407 ANKRD20A12PQ8NF67 263 aa13.84□□□□□ -0.19
PTPRF-203ENST00000372407 RRBP1Q9P2E9 1410 aaKnown RBP13.84□□□□□ -0.19
PTPRF-203ENST00000372407 PPP2R1AP30153 589 aa13.84□□□□□ -0.19
PTPRF-203ENST00000372407 CCDC73Q6ZRK6 1079 aa13.84□□□□□ -0.19
PTPRF-203ENST00000372407 CCDC70Q6NSX1 233 aa13.83□□□□□ -0.19
PTPRF-203ENST00000372407 HOMER1Q86YM7 354 aa13.83□□□□□ -0.19
PTPRF-203ENST00000372407 HOOK1Q9UJC3 728 aaKnown RBP13.83□□□□□ -0.19
PTPRF-203ENST00000372407 VPS53Q5VIR6 699 aa13.83□□□□□ -0.2
PTPRF-203ENST00000372407 PDE4CQ08493 712 aa13.83□□□□□ -0.2
PTPRF-203ENST00000372407 PPP6R1Q9UPN7 881 aa13.82□□□□□ -0.2
PTPRF-203ENST00000372407 TRAK2O60296 914 aa13.82□□□□□ -0.2
PTPRF-203ENST00000372407 UBTFL1P0CB47 393 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-203ENST00000372407 CEBPAP49715 358 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-203ENST00000372407 GNAI3P08754 354 aa13.82□□□□□ -0.2
PTPRF-203ENST00000372407 PSME1Q06323 249 aa13.82□□□□□ -0.2
PTPRF-203ENST00000372407 CFAP70Q5T0N1 1121 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms