RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 NISCHQ9Y2I1 1504 aa20.35■□□□□ 0.85
PTPRF-203ENST00000372407 DCAF8L2P0C7V8 631 aa19.61■□□□□ 0.73
PTPRF-203ENST00000372407 SUPT5HO00267 1087 aaKnown RBP18.8■□□□□ 0.6
PTPRF-203ENST00000372407 SHROOM4Q9ULL8 1493 aa18.33■□□□□ 0.52
PTPRF-203ENST00000372407 EHMT2Q96KQ7 1210 aa18.07■□□□□ 0.48
PTPRF-203ENST00000372407 PELP1Q8IZL8 1130 aaKnown RBP18.02■□□□□ 0.47
PTPRF-203ENST00000372407 APLP2Q06481 763 aa17.86■□□□□ 0.45
PTPRF-203ENST00000372407 ABCC9O60706 1549 aa17.83■□□□□ 0.45
PTPRF-203ENST00000372407 PCGF6Q9BYE7 350 aa17.74■□□□□ 0.43
PTPRF-203ENST00000372407 FAM9AQ8IZU1 332 aaPredicted RBP17.71■□□□□ 0.43
PTPRF-203ENST00000372407 ZEB1P37275 1124 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-203ENST00000372407 TTBK1Q5TCY1 1321 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-203ENST00000372407 CENPBP07199 599 aaPredicted RBP17.48■□□□□ 0.39
PTPRF-203ENST00000372407 TRIM41Q8WV44 630 aa17.42■□□□□ 0.38
PTPRF-203ENST00000372407 CCER1Q8TC90 406 aaPredicted RBP17.38■□□□□ 0.37
PTPRF-203ENST00000372407 PABPN1Q86U42 306 aaKnown RBP eCLIP17.3■□□□□ 0.36
PTPRF-203ENST00000372407 RANGAP1P46060 587 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-203ENST00000372407 CCDC180Q9P1Z9 1646 aa17.25■□□□□ 0.35
PTPRF-203ENST00000372407 ERICH6Q7L0X2 663 aa17.2■□□□□ 0.34
PTPRF-203ENST00000372407 UBTFP17480 764 aaKnown RBP17.19■□□□□ 0.34
PTPRF-203ENST00000372407 ATP1B4Q9UN42 357 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-203ENST00000372407 NEFLP07196 543 aa17.04■□□□□ 0.32
PTPRF-203ENST00000372407 TRIM26Q12899 539 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-203ENST00000372407 YTHDC1Q96MU7 727 aaKnown RBP16.98■□□□□ 0.31
PTPRF-203ENST00000372407 MYT1Q01538 1121 aa16.95■□□□□ 0.3
PTPRF-203ENST00000372407 PPARGC1BQ86YN6 1023 aaKnown RBP16.92■□□□□ 0.3
PTPRF-203ENST00000372407 HRCP23327 699 aa16.91■□□□□ 0.3
PTPRF-203ENST00000372407 ZCCHC6Q5VYS8 1495 aaKnown RBP16.84■□□□□ 0.29
PTPRF-203ENST00000372407 RB1CC1Q8TDY2 1594 aa16.82■□□□□ 0.28
PTPRF-203ENST00000372407 CHIC1Q5VXU3 224 aa16.77■□□□□ 0.28
PTPRF-203ENST00000372407 LOC105371045A0A1W2PR82 267 aa16.74■□□□□ 0.27
PTPRF-203ENST00000372407 SCRIBQ14160 1630 aa16.74■□□□□ 0.27
PTPRF-203ENST00000372407 NACADO15069 1562 aa16.68■□□□□ 0.26
PTPRF-203ENST00000372407 ITGAEP38570 1179 aa16.63■□□□□ 0.25
PTPRF-203ENST00000372407 HNRNPUL2Q1KMD3 747 aaKnown RBP16.6■□□□□ 0.25
PTPRF-203ENST00000372407 POLR3GLQ9BT43 218 aa16.49■□□□□ 0.23
PTPRF-203ENST00000372407 DAXXQ9UER7 740 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-203ENST00000372407 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-203ENST00000372407 DIEXFQ68CQ4 756 aaKnown RBP16.43■□□□□ 0.22
PTPRF-203ENST00000372407 MYT1LQ9UL68 1186 aa16.36■□□□□ 0.21
PTPRF-203ENST00000372407 DCAF1Q9Y4B6 1507 aa16.33■□□□□ 0.21
PTPRF-203ENST00000372407 CNGB1Q14028 1251 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-203ENST00000372407 FBLN2P98095 1184 aa16.2■□□□□ 0.18
PTPRF-203ENST00000372407 FAM50AQ14320 339 aaKnown RBP16.19■□□□□ 0.18
PTPRF-203ENST00000372407 RTL5Q5HYW3 569 aaPredicted RBP16.18■□□□□ 0.18
PTPRF-203ENST00000372407 GTF3C3Q9Y5Q9 886 aa16.13■□□□□ 0.17
PTPRF-203ENST00000372407 CLSPNQ9HAW4 1339 aa16.12■□□□□ 0.17
PTPRF-203ENST00000372407 MYO15BQ96JP2 1530 aa16.12■□□□□ 0.17
PTPRF-203ENST00000372407 TRIM52Q96A61 297 aa16.1■□□□□ 0.17
PTPRF-203ENST00000372407 NEUROD1Q13562 356 aa16.1■□□□□ 0.17
PTPRF-203ENST00000372407 SLC4A1APQ9BWU0 796 aaKnown RBP16.09■□□□□ 0.17
PTPRF-203ENST00000372407 ZNF316A6NFI3 1004 aaPredicted RBP16.08■□□□□ 0.16
PTPRF-203ENST00000372407 BAZ1BQ9UIG0 1483 aaKnown RBP16.06■□□□□ 0.16
PTPRF-203ENST00000372407 ANP32CO43423 234 aa16.05■□□□□ 0.16
PTPRF-203ENST00000372407 BCANQ96GW7 911 aa16.01■□□□□ 0.15
PTPRF-203ENST00000372407 BAZ1AQ9NRL2 1556 aaPredicted RBP15.98■□□□□ 0.15
PTPRF-203ENST00000372407 RSF1Q96T23 1441 aaPredicted RBP15.96■□□□□ 0.15
PTPRF-203ENST00000372407 CDK11AQ9UQ88 783 aaPredicted RBP15.96■□□□□ 0.14
PTPRF-203ENST00000372407 CECR2Q9BXF3 1484 aa15.93■□□□□ 0.14
PTPRF-203ENST00000372407 ACIN1Q9UKV3 1341 aaKnown RBP15.92■□□□□ 0.14
PTPRF-203ENST00000372407 ERCC6Q03468 1493 aa15.92■□□□□ 0.14
PTPRF-203ENST00000372407 CSRNP3Q8WYN3 585 aa15.92■□□□□ 0.14
PTPRF-203ENST00000372407 ZNF326Q5BKZ1 582 aaKnown RBP15.91■□□□□ 0.14
PTPRF-203ENST00000372407 SMARCA2P51531 1590 aa15.79■□□□□ 0.12
PTPRF-203ENST00000372407 ZBTB47Q9UFB7 747 aaPredicted RBP15.77■□□□□ 0.12
PTPRF-203ENST00000372407 CHMP7Q8WUX9 453 aaPredicted RBP15.76■□□□□ 0.11
PTPRF-203ENST00000372407 P3H3Q8IVL6 736 aa15.74■□□□□ 0.11
PTPRF-203ENST00000372407 MROH2BQ7Z745 1585 aa15.71■□□□□ 0.11
PTPRF-203ENST00000372407 CANXP27824 592 aaKnown RBP15.69■□□□□ 0.1
PTPRF-203ENST00000372407 ANP32AP39687 249 aaKnown RBP15.69■□□□□ 0.1
PTPRF-203ENST00000372407 NPM1P06748 294 aaKnown RBP eCLIP15.67■□□□□ 0.1
PTPRF-203ENST00000372407 PDS5BQ9NTI5 1447 aa15.66■□□□□ 0.1
PTPRF-203ENST00000372407 NEFMP07197 916 aa15.64■□□□□ 0.09
PTPRF-203ENST00000372407 ARID3CA6NKF2 412 aa15.63■□□□□ 0.09
PTPRF-203ENST00000372407 FKBP8Q14318 412 aa15.62■□□□□ 0.09
PTPRF-203ENST00000372407 TONSLQ96HA7 1378 aa15.61■□□□□ 0.09
PTPRF-203ENST00000372407 ATAD2BQ9ULI0 1458 aa15.61■□□□□ 0.09
PTPRF-203ENST00000372407 ZNF777Q9ULD5 760 aaPredicted RBP15.59■□□□□ 0.09
PTPRF-203ENST00000372407 WRNQ14191 1432 aaPredicted RBP eCLIP15.59■□□□□ 0.09
PTPRF-203ENST00000372407 HNRNPUQ00839 825 aaKnown RBP eCLIP15.58■□□□□ 0.08
PTPRF-203ENST00000372407 DDX10Q13206 875 aaKnown RBP15.58■□□□□ 0.08
PTPRF-203ENST00000372407 BCL11AQ9H165 835 aa15.55■□□□□ 0.08
PTPRF-203ENST00000372407 NPM2Q86SE8 214 aaKnown RBP15.54■□□□□ 0.08
PTPRF-203ENST00000372407 CADPSQ9ULU8 1353 aa15.53■□□□□ 0.08
PTPRF-203ENST00000372407 SMARCA4P51532 1647 aa15.53■□□□□ 0.08
PTPRF-203ENST00000372407 EIF4G1Q04637 1599 aaKnown RBP15.51■□□□□ 0.07
PTPRF-203ENST00000372407 SLC24A1O60721 1099 aa15.51■□□□□ 0.07
PTPRF-203ENST00000372407 CCDC88BA6NC98 1476 aa15.5■□□□□ 0.07
PTPRF-203ENST00000372407 FAM9BQ8IZU0 186 aa15.49■□□□□ 0.07
PTPRF-203ENST00000372407 KIF27Q86VH2 1401 aa15.46■□□□□ 0.06
PTPRF-203ENST00000372407 TOP2AP11388 1531 aaKnown RBP15.45■□□□□ 0.06
PTPRF-203ENST00000372407 WIZO95785 1651 aa15.45■□□□□ 0.06
PTPRF-203ENST00000372407 TMC1Q8TDI8 760 aa15.42■□□□□ 0.06
PTPRF-203ENST00000372407 CCDC136Q96JN2 1154 aa15.42■□□□□ 0.06
PTPRF-203ENST00000372407 UPF2Q9HAU5 1272 aaKnown RBP15.42■□□□□ 0.06
PTPRF-203ENST00000372407 NCAPD3P42695 1498 aa15.4■□□□□ 0.06
PTPRF-203ENST00000372407 MIER1Q8N108 512 aa15.39■□□□□ 0.05
PTPRF-203ENST00000372407 HSP90AA1P07900 732 aaKnown RBP15.39■□□□□ 0.05
PTPRF-203ENST00000372407 SALL2Q9Y467 1007 aaPredicted RBP15.38■□□□□ 0.05
PTPRF-203ENST00000372407 ANP32BQ92688 251 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms