RNA–Protein interactions for RNA: ENST00000300527.8

COL6A2-201, Transcript of collagen type VI alpha 2 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-201ENST00000300527 SAFB2Q14151 953 aaKnown RBP eCLIP18.4■□□□□ 0.54
COL6A2-201ENST00000300527 CFAP53Q96M91 514 aa18.4■□□□□ 0.54
COL6A2-201ENST00000300527 MRC2Q9UBG0 1479 aa18.4■□□□□ 0.54
COL6A2-201ENST00000300527 NINLQ9Y2I6 1382 aa18.39■□□□□ 0.53
COL6A2-201ENST00000300527 ARHGAP5Q13017 1502 aa18.39■□□□□ 0.53
COL6A2-201ENST00000300527 SYCP2Q9BX26 1530 aa18.39■□□□□ 0.53
COL6A2-201ENST00000300527 RBM42Q9BTD8 480 aaKnown RBP18.39■□□□□ 0.53
COL6A2-201ENST00000300527 KIAA1211Q6ZU35 1233 aa18.38■□□□□ 0.53
COL6A2-201ENST00000300527 SCAF11Q99590 1463 aaKnown RBP18.37■□□□□ 0.53
COL6A2-201ENST00000300527 TRIM27P14373 513 aa18.37■□□□□ 0.53
COL6A2-201ENST00000300527 C1orf115Q9H7X2 142 aa18.36■□□□□ 0.53
COL6A2-201ENST00000300527 NOB1Q9ULX3 412 aaKnown RBP18.36■□□□□ 0.53
COL6A2-201ENST00000300527 IFT140Q96RY7 1462 aa18.36■□□□□ 0.53
COL6A2-201ENST00000300527 DDX49Q9Y6V7 483 aaKnown RBP18.36■□□□□ 0.53
COL6A2-201ENST00000300527 NUTM2DQ5VT03 806 aaPredicted RBP18.36■□□□□ 0.53
COL6A2-201ENST00000300527 SSH1Q8WYL5 1049 aa18.36■□□□□ 0.53
COL6A2-201ENST00000300527 ADGRF5Q8IZF2 1346 aa18.36■□□□□ 0.53
COL6A2-201ENST00000300527 NUP160Q12769 1436 aa18.35■□□□□ 0.53
COL6A2-201ENST00000300527 SSFA2P28290 1259 aa18.35■□□□□ 0.53
COL6A2-201ENST00000300527 AFAP1Q8N556 730 aa18.35■□□□□ 0.53
COL6A2-201ENST00000300527 TMEM57Q8N5G2 664 aa18.35■□□□□ 0.53
COL6A2-201ENST00000300527 NGEFQ8N5V2 710 aa18.35■□□□□ 0.53
COL6A2-201ENST00000300527 ANKRD45Q5TZF3 282 aa18.35■□□□□ 0.53
COL6A2-201ENST00000300527 NSD3Q9BZ95 1437 aa18.35■□□□□ 0.53
COL6A2-201ENST00000300527 NASPP49321 788 aaPredicted RBP18.35■□□□□ 0.53
COL6A2-201ENST00000300527 TMEM132EQ6IEE7 984 aa18.35■□□□□ 0.53
COL6A2-201ENST00000300527 MSNP26038 577 aaKnown RBP18.34■□□□□ 0.53
COL6A2-201ENST00000300527 WDR63Q8IWG1 891 aa18.33■□□□□ 0.53
COL6A2-201ENST00000300527 CD2BP2O95400 341 aaKnown RBP18.33■□□□□ 0.52
COL6A2-201ENST00000300527 FAM13BQ9NYF5 915 aa18.33■□□□□ 0.52
COL6A2-201ENST00000300527 EIF2AK4Q9P2K8 1649 aaKnown RBP18.33■□□□□ 0.52
COL6A2-201ENST00000300527 ABCC2Q92887 1545 aa18.33■□□□□ 0.52
COL6A2-201ENST00000300527 GOLGA6L22H0YM25 854 aa18.33■□□□□ 0.52
COL6A2-201ENST00000300527 KIF3BO15066 747 aa18.32■□□□□ 0.52
COL6A2-201ENST00000300527 DDX19BQ9UMR2 479 aa18.32■□□□□ 0.52
COL6A2-201ENST00000300527 ZNF692Q9BU19 519 aaPredicted RBP18.32■□□□□ 0.52
COL6A2-201ENST00000300527 SYNJ2O15056 1496 aa18.32■□□□□ 0.52
COL6A2-201ENST00000300527 FOXD4L5Q5VV16 416 aaPredicted RBP18.31■□□□□ 0.52
COL6A2-201ENST00000300527 FOXD4L4Q8WXT5 416 aaPredicted RBP18.31■□□□□ 0.52
COL6A2-201ENST00000300527 SAMD9LQ8IVG5 1584 aa18.31■□□□□ 0.52
COL6A2-201ENST00000300527 R3HCC1Q9Y3T6 440 aaKnown RBP18.31■□□□□ 0.52
COL6A2-201ENST00000300527 ELL2O00472 640 aaPredicted RBP18.31■□□□□ 0.52
COL6A2-201ENST00000300527 AAMPQ13685 434 aa18.3■□□□□ 0.52
COL6A2-201ENST00000300527 ATF7IPQ6VMQ6 1270 aa18.3■□□□□ 0.52
COL6A2-201ENST00000300527 TPRNQ4KMQ1 711 aa18.29■□□□□ 0.52
COL6A2-201ENST00000300527 MCTP1Q6DN14 999 aa18.29■□□□□ 0.52
COL6A2-201ENST00000300527 CLASP1Q7Z460 1538 aa18.29■□□□□ 0.52
COL6A2-201ENST00000300527 SPAG9O60271 1321 aaKnown RBP18.29■□□□□ 0.52
COL6A2-201ENST00000300527 CAVIN1Q6NZI2 390 aaKnown RBP18.28■□□□□ 0.52
COL6A2-201ENST00000300527 POLR3AO14802 1390 aaPredicted RBP18.28■□□□□ 0.52
COL6A2-201ENST00000300527 APBB1O00213 710 aa18.28■□□□□ 0.52
COL6A2-201ENST00000300527 NPC1L1Q9UHC9 1359 aa18.27■□□□□ 0.52
COL6A2-201ENST00000300527 GAS2L2Q8NHY3 880 aa18.27■□□□□ 0.52
COL6A2-201ENST00000300527 MYO5CQ9NQX4 1742 aa18.27■□□□□ 0.51
COL6A2-201ENST00000300527 SKOR2Q2VWA4 1001 aaPredicted RBP18.26■□□□□ 0.51
COL6A2-201ENST00000300527 EFCAB2Q5VUJ9 269 aa18.26■□□□□ 0.51
COL6A2-201ENST00000300527 SYNMO15061 1565 aa18.26■□□□□ 0.51
COL6A2-201ENST00000300527 RAB3GAP1Q15042 981 aa18.26■□□□□ 0.51
COL6A2-201ENST00000300527 CHD1LQ86WJ1 897 aa18.26■□□□□ 0.51
COL6A2-201ENST00000300527 TPM2P07951 284 aa18.25■□□□□ 0.51
COL6A2-201ENST00000300527 GGNBP2Q9H3C7 697 aa18.25■□□□□ 0.51
COL6A2-201ENST00000300527 ARHGEF5Q12774 1597 aa18.25■□□□□ 0.51
COL6A2-201ENST00000300527 K7ELQ4 463 aaPredicted RBP18.24■□□□□ 0.51
COL6A2-201ENST00000300527 ABCA8O94911 1581 aa18.24■□□□□ 0.51
COL6A2-201ENST00000300527 RTEL1-TNFRSF6BF6WH68 1400 aa18.24■□□□□ 0.51
COL6A2-201ENST00000300527 RIPK4P57078 832 aa18.24■□□□□ 0.51
COL6A2-201ENST00000300527 XPCQ01831 940 aaPredicted RBP18.24■□□□□ 0.51
COL6A2-201ENST00000300527 HDAC1Q13547 482 aaPredicted RBP18.24■□□□□ 0.51
COL6A2-201ENST00000300527 CCDC173Q0VFZ6 552 aa18.24■□□□□ 0.51
COL6A2-201ENST00000300527 ZSCAN30Q86W11 494 aa18.24■□□□□ 0.51
COL6A2-201ENST00000300527 SMC5Q8IY18 1101 aa18.24■□□□□ 0.51
COL6A2-201ENST00000300527 CALD1Q05682 793 aaKnown RBP18.23■□□□□ 0.51
COL6A2-201ENST00000300527 MPNDQ8N594 471 aa18.23■□□□□ 0.51
COL6A2-201ENST00000300527 CHAMP1Q96JM3 812 aa18.22■□□□□ 0.51
COL6A2-201ENST00000300527 CABP2Q9NPB3 220 aa18.22■□□□□ 0.51
COL6A2-201ENST00000300527 ERVK-7P63135 1459 aa18.22■□□□□ 0.51
COL6A2-201ENST00000300527 TBC1D9Q6ZT07 1266 aa18.22■□□□□ 0.51
COL6A2-201ENST00000300527 ISY1Q9ULR0 285 aaKnown RBP18.21■□□□□ 0.51
COL6A2-201ENST00000300527 ERCC6Q03468 1493 aa18.21■□□□□ 0.51
COL6A2-201ENST00000300527 TMPOP42166 694 aaKnown RBP18.21■□□□□ 0.51
COL6A2-201ENST00000300527 RBM25P49756 843 aaKnown RBP18.21■□□□□ 0.51
COL6A2-201ENST00000300527 STK26Q9P289 416 aa18.21■□□□□ 0.51
COL6A2-201ENST00000300527 LAMC1P11047 1609 aa18.21■□□□□ 0.51
COL6A2-201ENST00000300527 IPO8O15397 1037 aaKnown RBP18.21■□□□□ 0.51
COL6A2-201ENST00000300527 NUCB1Q02818 461 aa18.21■□□□□ 0.51
COL6A2-201ENST00000300527 RBM27Q9P2N5 1060 aaKnown RBP18.21■□□□□ 0.51
COL6A2-201ENST00000300527 VIRMAQ69YN4 1812 aaKnown RBP18.2■□□□□ 0.5
COL6A2-201ENST00000300527 BAG4O95429 457 aaKnown RBP18.2■□□□□ 0.5
COL6A2-201ENST00000300527 CIZ1Q9ULV3 898 aaPredicted RBP18.2■□□□□ 0.5
COL6A2-201ENST00000300527 FOXD4L6Q3SYB3 417 aaPredicted RBP18.2■□□□□ 0.5
COL6A2-201ENST00000300527 FOXD4L3Q6VB84 417 aaPredicted RBP18.2■□□□□ 0.5
COL6A2-201ENST00000300527 RNF214Q8ND24 703 aa18.2■□□□□ 0.5
COL6A2-201ENST00000300527 SNX21Q969T3 373 aa18.2■□□□□ 0.5
COL6A2-201ENST00000300527 ZBTB40Q9NUA8 1239 aa18.2■□□□□ 0.5
COL6A2-201ENST00000300527 THUMPD2Q9BTF0 503 aaKnown RBP18.19■□□□□ 0.5
COL6A2-201ENST00000300527 PDCL3Q9H2J4 239 aa18.19■□□□□ 0.5
COL6A2-201ENST00000300527 SCAPERQ9BY12 1400 aa18.19■□□□□ 0.5
COL6A2-201ENST00000300527 PRPF40AO75400 957 aaKnown RBP18.18■□□□□ 0.5
COL6A2-201ENST00000300527 PKP1Q13835 747 aa18.18■□□□□ 0.5
COL6A2-201ENST00000300527 TRAPPC8Q9Y2L5 1435 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms