RNA–Protein interactions for RNA: ENST00000300527.8

COL6A2-201, Transcript of collagen type VI alpha 2 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-201ENST00000300527 NISCHQ9Y2I1 1504 aa27.66■■■□□ 2.02
COL6A2-201ENST00000300527 SHROOM4Q9ULL8 1493 aa25.15■■□□□ 1.62
COL6A2-201ENST00000300527 SUPT5HO00267 1087 aaKnown RBP25.02■■□□□ 1.6
COL6A2-201ENST00000300527 HRCP23327 699 aa24.56■■□□□ 1.52
COL6A2-201ENST00000300527 PCGF6Q9BYE7 350 aa24.51■■□□□ 1.51
COL6A2-201ENST00000300527 PPARGC1BQ86YN6 1023 aaKnown RBP24.41■■□□□ 1.5
COL6A2-201ENST00000300527 CHIC1Q5VXU3 224 aa24.15■■□□□ 1.46
COL6A2-201ENST00000300527 MYO15BQ96JP2 1530 aa24.13■■□□□ 1.45
COL6A2-201ENST00000300527 DCAF8L2P0C7V8 631 aa24.11■■□□□ 1.45
COL6A2-201ENST00000300527 LOC105371045A0A1W2PR82 267 aa23.85■■□□□ 1.41
COL6A2-201ENST00000300527 TRIM26Q12899 539 aaPredicted RBP23.47■■□□□ 1.35
COL6A2-201ENST00000300527 EHMT2Q96KQ7 1210 aa23.45■■□□□ 1.34
COL6A2-201ENST00000300527 ZCCHC6Q5VYS8 1495 aaKnown RBP23.42■■□□□ 1.34
COL6A2-201ENST00000300527 DCAF1Q9Y4B6 1507 aa23.33■■□□□ 1.33
COL6A2-201ENST00000300527 FAM9AQ8IZU1 332 aaPredicted RBP23.28■■□□□ 1.32
COL6A2-201ENST00000300527 PELP1Q8IZL8 1130 aaKnown RBP23.24■■□□□ 1.31
COL6A2-201ENST00000300527 SCAF1Q9H7N4 1312 aaKnown RBP23.22■■□□□ 1.31
COL6A2-201ENST00000300527 ZEB1P37275 1124 aaPredicted RBP23.12■■□□□ 1.29
COL6A2-201ENST00000300527 TRIM41Q8WV44 630 aa22.97■■□□□ 1.27
COL6A2-201ENST00000300527 CCDC180Q9P1Z9 1646 aa22.93■■□□□ 1.26
COL6A2-201ENST00000300527 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.79■■□□□ 1.24
COL6A2-201ENST00000300527 TTBK1Q5TCY1 1321 aaPredicted RBP22.79■■□□□ 1.24
COL6A2-201ENST00000300527 CCER1Q8TC90 406 aaPredicted RBP22.74■■□□□ 1.23
COL6A2-201ENST00000300527 NEUROD1Q13562 356 aa22.73■■□□□ 1.23
COL6A2-201ENST00000300527 ACIN1Q9UKV3 1341 aaKnown RBP22.68■■□□□ 1.22
COL6A2-201ENST00000300527 GTF3C3Q9Y5Q9 886 aa22.66■■□□□ 1.22
COL6A2-201ENST00000300527 CENPBP07199 599 aaPredicted RBP22.52■■□□□ 1.2
COL6A2-201ENST00000300527 DIEXFQ68CQ4 756 aaKnown RBP22.52■■□□□ 1.2
COL6A2-201ENST00000300527 YTHDC1Q96MU7 727 aaKnown RBP22.5■■□□□ 1.19
COL6A2-201ENST00000300527 RSF1Q96T23 1441 aaPredicted RBP22.35■■□□□ 1.17
COL6A2-201ENST00000300527 RB1CC1Q8TDY2 1594 aa22.23■■□□□ 1.15
COL6A2-201ENST00000300527 ABCC9O60706 1549 aa22.19■■□□□ 1.14
COL6A2-201ENST00000300527 SCRIBQ14160 1630 aa22.19■■□□□ 1.14
COL6A2-201ENST00000300527 MYT1Q01538 1121 aa22.18■■□□□ 1.14
COL6A2-201ENST00000300527 ZNF316A6NFI3 1004 aaPredicted RBP22.04■■□□□ 1.12
COL6A2-201ENST00000300527 HNRNPUL2Q1KMD3 747 aaKnown RBP21.98■■□□□ 1.11
COL6A2-201ENST00000300527 MIER1Q8N108 512 aa21.98■■□□□ 1.11
COL6A2-201ENST00000300527 UBTFP17480 764 aaKnown RBP21.96■■□□□ 1.11
COL6A2-201ENST00000300527 CECR2Q9BXF3 1484 aa21.89■■□□□ 1.09
COL6A2-201ENST00000300527 RANGAP1P46060 587 aaPredicted RBP21.84■■□□□ 1.09
COL6A2-201ENST00000300527 MROH2BQ7Z745 1585 aa21.74■■□□□ 1.07
COL6A2-201ENST00000300527 CEP162Q5TB80 1403 aa21.74■■□□□ 1.07
COL6A2-201ENST00000300527 WIZO95785 1651 aa21.63■■□□□ 1.05
COL6A2-201ENST00000300527 ABCC8Q09428 1581 aa21.61■■□□□ 1.05
COL6A2-201ENST00000300527 CCDC88BA6NC98 1476 aa21.61■■□□□ 1.05
COL6A2-201ENST00000300527 SOGA1O94964 1423 aa21.61■■□□□ 1.05
COL6A2-201ENST00000300527 CSRNP3Q8WYN3 585 aa21.6■■□□□ 1.05
COL6A2-201ENST00000300527 APLP2Q06481 763 aa21.58■■□□□ 1.04
COL6A2-201ENST00000300527 WRNQ14191 1432 aaPredicted RBP eCLIP21.51■■□□□ 1.03
COL6A2-201ENST00000300527 TNIKQ9UKE5 1360 aa21.48■■□□□ 1.03
COL6A2-201ENST00000300527 BCANQ96GW7 911 aa21.47■■□□□ 1.03
COL6A2-201ENST00000300527 SUPT16HQ9Y5B9 1047 aaKnown RBP21.47■■□□□ 1.03
COL6A2-201ENST00000300527 RUSC2Q8N2Y8 1516 aa21.47■■□□□ 1.03
COL6A2-201ENST00000300527 ITGAEP38570 1179 aa21.32■■□□□ 1
COL6A2-201ENST00000300527 TSHZ2Q9NRE2 1034 aa21.31■■□□□ 1
COL6A2-201ENST00000300527 GOLGA3Q08378 1498 aa21.26■□□□□ 0.99
COL6A2-201ENST00000300527 BAZ1AQ9NRL2 1556 aaPredicted RBP21.25■□□□□ 0.99
COL6A2-201ENST00000300527 KCNH8Q96L42 1107 aa21.24■□□□□ 0.99
COL6A2-201ENST00000300527 CLIP1P30622 1438 aa21.23■□□□□ 0.99
COL6A2-201ENST00000300527 ANP32EQ9BTT0 268 aa21.23■□□□□ 0.99
COL6A2-201ENST00000300527 EIF4G1Q04637 1599 aaKnown RBP21.16■□□□□ 0.98
COL6A2-201ENST00000300527 FKBP8Q14318 412 aa21.15■□□□□ 0.98
COL6A2-201ENST00000300527 EEA1Q15075 1411 aa21.14■□□□□ 0.97
COL6A2-201ENST00000300527 BCL11AQ9H165 835 aa21.12■□□□□ 0.97
COL6A2-201ENST00000300527 NACADO15069 1562 aa21.1■□□□□ 0.97
COL6A2-201ENST00000300527 CLSPNQ9HAW4 1339 aa21.09■□□□□ 0.97
COL6A2-201ENST00000300527 PABPN1Q86U42 306 aaKnown RBP eCLIP21.08■□□□□ 0.96
COL6A2-201ENST00000300527 TOP2AP11388 1531 aaKnown RBP21.06■□□□□ 0.96
COL6A2-201ENST00000300527 VPS8Q8N3P4 1428 aa21.05■□□□□ 0.96
COL6A2-201ENST00000300527 DHX57Q6P158 1386 aaKnown RBP21.05■□□□□ 0.96
COL6A2-201ENST00000300527 SMARCA2P51531 1590 aa21.03■□□□□ 0.96
COL6A2-201ENST00000300527 DDX10Q13206 875 aaKnown RBP21.03■□□□□ 0.96
COL6A2-201ENST00000300527 CEP164Q9UPV0 1460 aa21.02■□□□□ 0.96
COL6A2-201ENST00000300527 KANK4Q5T7N3 995 aaPredicted RBP21.02■□□□□ 0.96
COL6A2-201ENST00000300527 NEFLP07196 543 aa21.01■□□□□ 0.95
COL6A2-201ENST00000300527 HIRIP3Q9BW71 556 aaPredicted RBP21.01■□□□□ 0.95
COL6A2-201ENST00000300527 TRIM52Q96A61 297 aa20.98■□□□□ 0.95
COL6A2-201ENST00000300527 RAPGEF2Q9Y4G8 1499 aa20.95■□□□□ 0.94
COL6A2-201ENST00000300527 SMARCA4P51532 1647 aa20.88■□□□□ 0.93
COL6A2-201ENST00000300527 RBM19Q9Y4C8 960 aaKnown RBP20.88■□□□□ 0.93
COL6A2-201ENST00000300527 SIN3AQ96ST3 1273 aa20.83■□□□□ 0.92
COL6A2-201ENST00000300527 ATP1B4Q9UN42 357 aaPredicted RBP20.82■□□□□ 0.92
COL6A2-201ENST00000300527 IRX6P78412 446 aaPredicted RBP20.81■□□□□ 0.92
COL6A2-201ENST00000300527 KIF21BO75037 1637 aa20.81■□□□□ 0.92
COL6A2-201ENST00000300527 ERICH6Q7L0X2 663 aa20.79■□□□□ 0.92
COL6A2-201ENST00000300527 SYNJ1O43426 1573 aa20.78■□□□□ 0.92
COL6A2-201ENST00000300527 FAM50AQ14320 339 aaKnown RBP20.77■□□□□ 0.92
COL6A2-201ENST00000300527 ANP32CO43423 234 aa20.71■□□□□ 0.91
COL6A2-201ENST00000300527 CCNB3Q8WWL7 1395 aa20.69■□□□□ 0.9
COL6A2-201ENST00000300527 RAB3GAP2Q9H2M9 1393 aa20.68■□□□□ 0.9
COL6A2-201ENST00000300527 BAZ1BQ9UIG0 1483 aaKnown RBP20.65■□□□□ 0.9
COL6A2-201ENST00000300527 MSH5O43196 834 aa20.62■□□□□ 0.89
COL6A2-201ENST00000300527 P3H3Q8IVL6 736 aa20.61■□□□□ 0.89
COL6A2-201ENST00000300527 ARAP1Q96P48 1450 aa20.6■□□□□ 0.89
COL6A2-201ENST00000300527 HNRNPUQ00839 825 aaKnown RBP eCLIP20.59■□□□□ 0.89
COL6A2-201ENST00000300527 CDK11AQ9UQ88 783 aaPredicted RBP20.57■□□□□ 0.88
COL6A2-201ENST00000300527 PPP1R15AO75807 674 aaPredicted RBP20.54■□□□□ 0.88
COL6A2-201ENST00000300527 RRBP1Q9P2E9 1410 aaKnown RBP20.52■□□□□ 0.88
COL6A2-201ENST00000300527 WDR97A6NE52 1622 aa20.5■□□□□ 0.87
COL6A2-201ENST00000300527 CNGB1Q14028 1251 aaPredicted RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 141.8 ms