RNA–Protein interactions for RNA: ENST00000273286.5

LRTM1-201, Transcript of leucine rich repeats and transmembrane domains 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRTM1, Length 1,423 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1-201ENST00000273286 EEA1Q15075 1411 aa16.24■□□□□ 0.19
LRTM1-201ENST00000273286 NYAP1Q6ZVC0 841 aa16.24■□□□□ 0.19
LRTM1-201ENST00000273286 NUTM2FA1L443 756 aa16.22■□□□□ 0.19
LRTM1-201ENST00000273286 PTGDRQ13258 359 aa16.21■□□□□ 0.19
LRTM1-201ENST00000273286 KDM2AQ9Y2K7 1162 aa16.21■□□□□ 0.19
LRTM1-201ENST00000273286 IFFO2Q5TF58 517 aa16.2■□□□□ 0.18
LRTM1-201ENST00000273286 SAMD9Q5K651 1589 aa16.2■□□□□ 0.18
LRTM1-201ENST00000273286 PHLDB1Q86UU1 1377 aa16.2■□□□□ 0.18
LRTM1-201ENST00000273286 ATP10BO94823 1461 aa16.17■□□□□ 0.18
LRTM1-201ENST00000273286 PPP4CP60510 307 aa16.17■□□□□ 0.18
LRTM1-201ENST00000273286 TESPA1A2RU30 521 aaPredicted RBP16.16■□□□□ 0.18
LRTM1-201ENST00000273286 RNF40O75150 1001 aa16.16■□□□□ 0.18
LRTM1-201ENST00000273286 ITGBL1O95965 494 aaPredicted RBP16.16■□□□□ 0.18
LRTM1-201ENST00000273286 ARAP3Q8WWN8 1544 aa16.16■□□□□ 0.18
LRTM1-201ENST00000273286 HDGFP51858 240 aaKnown RBP16.15■□□□□ 0.18
LRTM1-201ENST00000273286 ABCA9Q8IUA7 1624 aa16.15■□□□□ 0.18
LRTM1-201ENST00000273286 RAPGEF6Q8TEU7 1601 aa16.15■□□□□ 0.18
LRTM1-201ENST00000273286 A0A0G2JS52 829 aa16.11■□□□□ 0.17
LRTM1-201ENST00000273286 FCHSD2O94868 740 aa16.11■□□□□ 0.17
LRTM1-201ENST00000273286 EYA1Q99502 592 aa16.11■□□□□ 0.17
LRTM1-201ENST00000273286 NEO1Q92859 1461 aa16.1■□□□□ 0.17
LRTM1-201ENST00000273286 SWT1Q5T5J6 900 aaKnown RBP16.1■□□□□ 0.17
LRTM1-201ENST00000273286 SMYD5Q6GMV2 418 aa16.1■□□□□ 0.17
LRTM1-201ENST00000273286 RBM26Q5T8P6 1007 aaKnown RBP16.09■□□□□ 0.17
LRTM1-201ENST00000273286 ARID3CA6NKF2 412 aa16.08■□□□□ 0.16
LRTM1-201ENST00000273286 EFCAB5A4FU69 1503 aa16.08■□□□□ 0.16
LRTM1-201ENST00000273286 NUP153P49790 1475 aaKnown RBP16.07■□□□□ 0.16
LRTM1-201ENST00000273286 VSIG10Q8N0Z9 540 aa16.07■□□□□ 0.16
LRTM1-201ENST00000273286 KCNC4Q03721 635 aa16.06■□□□□ 0.16
LRTM1-201ENST00000273286 ADGRG1Q9Y653 693 aa16.06■□□□□ 0.16
LRTM1-201ENST00000273286 KIF21BO75037 1637 aa16.06■□□□□ 0.16
LRTM1-201ENST00000273286 RBM46Q8TBY0 533 aaKnown RBP16.05■□□□□ 0.16
LRTM1-201ENST00000273286 PLEKHD1A6NEE1 506 aa16.04■□□□□ 0.16
LRTM1-201ENST00000273286 SLF2Q8IX21 1173 aa16.04■□□□□ 0.16
LRTM1-201ENST00000273286 HECW2Q9P2P5 1572 aa16.04■□□□□ 0.16
LRTM1-201ENST00000273286 FHOD3Q2V2M9 1422 aa16.04■□□□□ 0.16
LRTM1-201ENST00000273286 FAM161AQ3B820 660 aa16.03■□□□□ 0.16
LRTM1-201ENST00000273286 DNAJB2P25686 324 aa16.01■□□□□ 0.15
LRTM1-201ENST00000273286 SLC4A3P48751 1232 aa16.01■□□□□ 0.15
LRTM1-201ENST00000273286 NECTIN2Q92692 538 aa16.01■□□□□ 0.15
LRTM1-201ENST00000273286 CFAP74Q9C0B2 1584 aa16■□□□□ 0.15
LRTM1-201ENST00000273286 HIC1Q14526 733 aa16■□□□□ 0.15
LRTM1-201ENST00000273286 APLP1P51693 650 aa15.99■□□□□ 0.15
LRTM1-201ENST00000273286 RANGAP1P46060 587 aaPredicted RBP15.98■□□□□ 0.15
LRTM1-201ENST00000273286 RAPGEF3O95398 923 aa15.97■□□□□ 0.15
LRTM1-201ENST00000273286 TJAP1Q5JTD0 557 aa15.96■□□□□ 0.15
LRTM1-201ENST00000273286 MTRQ99707 1265 aa15.96■□□□□ 0.15
LRTM1-201ENST00000273286 FANCAO15360 1455 aa15.96■□□□□ 0.14
LRTM1-201ENST00000273286 DENND4BO75064 1496 aaPredicted RBP15.96■□□□□ 0.14
LRTM1-201ENST00000273286 RCCD1A6NED2 376 aa15.95■□□□□ 0.14
LRTM1-201ENST00000273286 RGS20O76081 388 aa15.95■□□□□ 0.14
LRTM1-201ENST00000273286 TMEM134Q9H6X4 195 aa15.95■□□□□ 0.14
LRTM1-201ENST00000273286 FMN1Q68DA7 1419 aa15.95■□□□□ 0.14
LRTM1-201ENST00000273286 ADAMTSL3P82987 1691 aa15.94■□□□□ 0.14
LRTM1-201ENST00000273286 FRMPD1Q5SYB0 1578 aa15.94■□□□□ 0.14
LRTM1-201ENST00000273286 GPR37O15354 613 aa15.94■□□□□ 0.14
LRTM1-201ENST00000273286 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.93■□□□□ 0.14
LRTM1-201ENST00000273286 AKNAQ7Z591 1439 aa15.93■□□□□ 0.14
LRTM1-201ENST00000273286 IL21Q9HBE4 155 aa15.93■□□□□ 0.14
LRTM1-201ENST00000273286 PTPRMP28827 1452 aa15.92■□□□□ 0.14
LRTM1-201ENST00000273286 ARHGEF40Q8TER5 1519 aa15.92■□□□□ 0.14
LRTM1-201ENST00000273286 GNPATO15228 680 aa15.92■□□□□ 0.14
LRTM1-201ENST00000273286 BCORL1Q5H9F3 1711 aa15.91■□□□□ 0.14
LRTM1-201ENST00000273286 RICTORQ6R327 1708 aa15.91■□□□□ 0.14
LRTM1-201ENST00000273286 ARID4BQ4LE39 1312 aaPredicted RBP15.91■□□□□ 0.14
LRTM1-201ENST00000273286 UBTFP17480 764 aaKnown RBP15.91■□□□□ 0.14
LRTM1-201ENST00000273286 CDK11AQ9UQ88 783 aaPredicted RBP15.91■□□□□ 0.14
LRTM1-201ENST00000273286 MAGI2Q86UL8 1455 aa15.9■□□□□ 0.14
LRTM1-201ENST00000273286 HECW1Q76N89 1606 aa15.9■□□□□ 0.14
LRTM1-201ENST00000273286 OATP04181 439 aa15.9■□□□□ 0.14
LRTM1-201ENST00000273286 FECHP22830 423 aa15.9■□□□□ 0.14
LRTM1-201ENST00000273286 GPIHBP1Q8IV16 184 aa15.9■□□□□ 0.14
LRTM1-201ENST00000273286 PXYLP1Q8TE99 480 aa15.9■□□□□ 0.14
LRTM1-201ENST00000273286 ZMYM4Q5VZL5 1548 aa15.9■□□□□ 0.14
LRTM1-201ENST00000273286 TTC37Q6PGP7 1564 aa15.89■□□□□ 0.13
LRTM1-201ENST00000273286 POGZQ7Z3K3 1410 aa15.89■□□□□ 0.13
LRTM1-201ENST00000273286 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.89■□□□□ 0.13
LRTM1-201ENST00000273286 PLCH2O75038 1416 aa15.88■□□□□ 0.13
LRTM1-201ENST00000273286 CDK13Q14004 1512 aaKnown RBP15.87■□□□□ 0.13
LRTM1-201ENST00000273286 METTL3Q86U44 580 aaKnown RBP15.86■□□□□ 0.13
LRTM1-201ENST00000273286 ZNF516Q92618 1163 aa15.86■□□□□ 0.13
LRTM1-201ENST00000273286 PRR14Q9BWN1 585 aa15.86■□□□□ 0.13
LRTM1-201ENST00000273286 COPS2P61201 443 aa15.85■□□□□ 0.13
LRTM1-201ENST00000273286 ZFYVE16Q7Z3T8 1539 aa15.85■□□□□ 0.13
LRTM1-201ENST00000273286 MADDQ8WXG6 1647 aa15.84■□□□□ 0.13
LRTM1-201ENST00000273286 ARHGAP35Q9NRY4 1499 aa15.84■□□□□ 0.13
LRTM1-201ENST00000273286 TULP1O00294 542 aaPredicted RBP15.82■□□□□ 0.12
LRTM1-201ENST00000273286 PCF11O94913 1555 aaKnown RBP15.82■□□□□ 0.12
LRTM1-201ENST00000273286 CLIP1P30622 1438 aa15.82■□□□□ 0.12
LRTM1-201ENST00000273286 EFCAB2Q5VUJ9 269 aa15.82■□□□□ 0.12
LRTM1-201ENST00000273286 SCAPERQ9BY12 1400 aa15.82■□□□□ 0.12
LRTM1-201ENST00000273286 PCDHB3Q9Y5E6 796 aa15.82■□□□□ 0.12
LRTM1-201ENST00000273286 MYO5CQ9NQX4 1742 aa15.81■□□□□ 0.12
LRTM1-201ENST00000273286 ATP1B4Q9UN42 357 aaPredicted RBP15.81■□□□□ 0.12
LRTM1-201ENST00000273286 KIF14Q15058 1648 aa15.81■□□□□ 0.12
LRTM1-201ENST00000273286 CFHP08603 1231 aa15.8■□□□□ 0.12
LRTM1-201ENST00000273286 TROQ12816 1431 aaPredicted RBP15.79■□□□□ 0.12
LRTM1-201ENST00000273286 KMT5BQ4FZB7 885 aa15.79■□□□□ 0.12
LRTM1-201ENST00000273286 RIMS1Q86UR5 1692 aaKnown RBP15.79■□□□□ 0.12
LRTM1-201ENST00000273286 YEATS2Q9ULM3 1422 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms