RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W ARC15P40518 154 aaRIP-Chip data6.14□□□□□ -1.43not detected
UFD1YGR048W KEG1P43614 200 aa6.14□□□□□ -1.43
UFD1YGR048W ICS3P47034 131 aa6.14□□□□□ -1.43
UFD1YGR048W YJL027CP47063 138 aaPredicted RBP6.14□□□□□ -1.43
UFD1YGR048W YFL015CP43578 164 aa6.13□□□□□ -1.43
UFD1YGR048W RGM1Q00453 211 aa6.13□□□□□ -1.43
UFD1YGR048W YDR114CQ04597 100 aa6.13□□□□□ -1.43
UFD1YGR048W SRL1Q08673 210 aa6.13□□□□□ -1.43
UFD1YGR048W YOR268CQ08734 132 aa6.13□□□□□ -1.43
UFD1YGR048W RPL15AP05748 204 aaKnown RBP6.12□□□□□ -1.43
UFD1YGR048W RPL16AP26784 199 aaKnown RBP6.12□□□□□ -1.43
UFD1YGR048W YKR045CP36138 183 aa6.12□□□□□ -1.43
UFD1YGR048W RSM18P40033 138 aa6.12□□□□□ -1.43
UFD1YGR048W YIL086CP40503 102 aa6.12□□□□□ -1.43
UFD1YGR048W YMR295CQ03559 197 aa6.12□□□□□ -1.43
UFD1YGR048W YJR107C-AP0CT86 78 aa6.11□□□□□ -1.43
UFD1YGR048W YNL234WP53857 426 aa6.11□□□□□ -1.43
UFD1YGR048W SMD1Q02260 146 aaPredicted RBP6.11□□□□□ -1.43
UFD1YGR048W SPG4Q04438 115 aa6.11□□□□□ -1.43
UFD1YGR048W YLR162WQ06235 118 aa6.11□□□□□ -1.43
UFD1YGR048W YOR314WQ12506 109 aa6.11□□□□□ -1.43
UFD1YGR048W FAS1P07149 2051 aaKnown RBP6.11□□□□□ -1.43
UFD1YGR048W YLR236CA0A023PZG4 107 aa6.09□□□□□ -1.43
UFD1YGR048W YOL160WQ08321 113 aa6.09□□□□□ -1.43
UFD1YGR048W YDR182W-AQ3E796 67 aa6.09□□□□□ -1.43
UFD1YGR048W HHF1P02309 103 aaKnown RBP6.08□□□□□ -1.44
UFD1YGR048W YER084WP40057 128 aa6.08□□□□□ -1.44
UFD1YGR048W EDC1P53080 175 aaPredicted RBP6.08□□□□□ -1.44
UFD1YGR048W YDR274CP87283 123 aa6.08□□□□□ -1.44
UFD1YGR048W YOR381W-AQ3E804 55 aa6.08□□□□□ -1.44
UFD1YGR048W YGR121W-AQ3E816 71 aa6.08□□□□□ -1.44
UFD1YGR048W RPL26AP05743 127 aaKnown RBP6.07□□□□□ -1.44
UFD1YGR048W YOR020W-AQ3E824 90 aa6.07□□□□□ -1.44
UFD1YGR048W RPL36BO14455 100 aaKnown RBP6.06□□□□□ -1.44
UFD1YGR048W RPL36AP05745 100 aaPredicted RBP6.06□□□□□ -1.44
UFD1YGR048W RPB9P27999 122 aa6.06□□□□□ -1.44
UFD1YGR048W YBR144CP34215 104 aa6.06□□□□□ -1.44
UFD1YGR048W RPL26BP53221 127 aaKnown RBP6.06□□□□□ -1.44
UFD1YGR048W YOR034C-AQ3E735 80 aa6.06□□□□□ -1.44
UFD1YGR048W YIL046W-AQ3E7Z4 54 aa6.06□□□□□ -1.44
UFD1YGR048W NOP10Q6Q547 58 aaPredicted RBP6.05□□□□□ -1.44
UFD1YGR048W MRPL39P36533 70 aa6.04□□□□□ -1.44
UFD1YGR048W YBL081WP38180 368 aaKnown RBP6.04□□□□□ -1.44
UFD1YGR048W YKL065W-AQ2V2P2 73 aa6.04□□□□□ -1.44
UFD1YGR048W YBR200W-AQ3E755 54 aa6.04□□□□□ -1.44
UFD1YGR048W MPC3P53311 146 aa6.03□□□□□ -1.44
UFD1YGR048W ATP18P81450 59 aa6.03□□□□□ -1.44
UFD1YGR048W CRC1Q12289 327 aa6.03□□□□□ -1.44
UFD1YGR048W YMR105W-AQ8TGS8 64 aa6.03□□□□□ -1.44
UFD1YGR048W YFR035CP43608 114 aa6.02□□□□□ -1.45
UFD1YGR048W YHL005CP38752 130 aa6.01□□□□□ -1.45
UFD1YGR048W YEL008WP40001 126 aa6.01□□□□□ -1.45
UFD1YGR048W YOL166W-AQ8TGJ1 51 aa6.01□□□□□ -1.45
UFD1YGR048W YOR032W-AQ8TGS1 66 aa6.01□□□□□ -1.45
UFD1YGR048W SEN1Q00416 2231 aaKnown RBP6.01□□□□□ -1.45
UFD1YGR048W SIP18P50263 79 aa6□□□□□ -1.45
UFD1YGR048W YGR035W-AQ45U48 73 aa6□□□□□ -1.45
UFD1YGR048W YOR376W-AQ3E805 51 aa5.99□□□□□ -1.45
UFD1YGR048W YBR126W-AQ8TGU7 68 aa5.99□□□□□ -1.45
UFD1YGR048W MRPL38P35996 138 aaPredicted RBP5.98□□□□□ -1.45
UFD1YGR048W POR2P40478 281 aa5.98□□□□□ -1.45
UFD1YGR048W RPR2P40571 144 aa5.98□□□□□ -1.45
UFD1YGR048W TOS8P53147 276 aa5.98□□□□□ -1.45
UFD1YGR048W DIF1O13577 133 aa5.97□□□□□ -1.45
UFD1YGR048W RPL38P49167 78 aaKnown RBP5.97□□□□□ -1.45
UFD1YGR048W YMR122CQ03879 124 aa5.97□□□□□ -1.45
UFD1YGR048W RNH203Q12338 110 aa5.97□□□□□ -1.45
UFD1YGR048W OST5Q92316 86 aa5.97□□□□□ -1.45
UFD1YGR048W YER188C-AP0C0V2 99 aa5.96□□□□□ -1.46
UFD1YGR048W YML100W-AQ8TGT0 57 aa5.96□□□□□ -1.46
UFD1YGR048W YOL085CQ99345 113 aa5.96□□□□□ -1.46
UFD1YGR048W TDA2P40045 126 aa5.95□□□□□ -1.46
UFD1YGR048W YIR020CP40575 100 aa5.95□□□□□ -1.46
UFD1YGR048W YGL088WP53151 121 aa5.95□□□□□ -1.46
UFD1YGR048W YGL034CP53186 121 aa5.95□□□□□ -1.46
UFD1YGR048W YGR025WP53216 100 aa5.95□□□□□ -1.46
UFD1YGR048W CCW12Q12127 133 aa5.95□□□□□ -1.46
UFD1YGR048W RPL39P04650 51 aa5.94□□□□□ -1.46
UFD1YGR048W YFR009W-AP0C5M9 85 aa5.94□□□□□ -1.46
UFD1YGR048W YEL045CP32616 141 aa5.94□□□□□ -1.46
UFD1YGR048W COX14P39103 70 aa5.94□□□□□ -1.46
UFD1YGR048W SED1Q01589 338 aa5.94□□□□□ -1.46
UFD1YGR048W SPO24Q3E752 67 aa5.94□□□□□ -1.46
UFD1YGR048W RPS30AP0CX33 63 aaKnown RBP5.93□□□□□ -1.46
UFD1YGR048W RPS30BP0CX34 63 aaKnown RBP5.93□□□□□ -1.46
UFD1YGR048W YHL037CP38733 133 aa5.93□□□□□ -1.46
UFD1YGR048W YPS5P53057 165 aa5.93□□□□□ -1.46
UFD1YGR048W YLL006W-AQ3E814 58 aa5.93□□□□□ -1.46
UFD1YGR048W RPS23AP0CX29 145 aaKnown RBP5.91□□□□□ -1.46
UFD1YGR048W RPS23BP0CX30 145 aa5.91□□□□□ -1.46
UFD1YGR048W YGL193CP53097 103 aa5.9□□□□□ -1.46
UFD1YGR048W YMR244WQ04018 355 aa5.9□□□□□ -1.46
UFD1YGR048W TSC3Q3E790 80 aa5.9□□□□□ -1.46
UFD1YGR048W YPR153WQ06537 140 aa5.89□□□□□ -1.47
UFD1YGR048W UTH1P36135 365 aa5.88□□□□□ -1.47
UFD1YGR048W SPG1P50088 95 aa5.88□□□□□ -1.47
UFD1YGR048W BPH1P25356 2167 aa5.87□□□□□ -1.47
UFD1YGR048W VAM10Q08474 114 aa5.85□□□□□ -1.47
UFD1YGR048W YNL146C-AQ3E7Z1 64 aa5.84□□□□□ -1.47
UFD1YGR048W YBR219CP38317 127 aa5.82□□□□□ -1.48
Retrieved 100 of 5,963 RNA–protein pairs in 57.4 ms