Protein–RNA interactions for Protein: P27999

RPB9, DNA-directed RNA polymerase II subunit RPB9, yeastyeast

Predictions only

Length 122 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPB9P27999 YML009W-BYML009W-B 477 nt16.85■□□□□ 0.29
RPB9P27999 NOP1YDL014W 984 nt16.59■□□□□ 0.25
RPB9P27999 NSR1YGR159C 1245 nt16.53■□□□□ 0.24
RPB9P27999 YKL036CYKL036C 393 nt15.54■□□□□ 0.08
RPB9P27999 Q0297Q0297 156 nt14.57□□□□□ -0.08
RPB9P27999 YJL027CYJL027C 417 nt14.56□□□□□ -0.08
RPB9P27999 SRX1YKL086W 384 nt14.45□□□□□ -0.1
RPB9P27999 MDJ1YFL016C 1536 nt14.3□□□□□ -0.12
RPB9P27999 SCS3YGL126W 1143 nt14.25□□□□□ -0.13
RPB9P27999 YCR051WYCR051W 669 nt13.72□□□□□ -0.21
RPB9P27999 YOL085CYOL085C 342 nt13.42□□□□□ -0.26
RPB9P27999 PKP1YIL042C 1185 nt13.14□□□□□ -0.31
RPB9P27999 SCJ1YMR214W 1134 nt13.09□□□□□ -0.31
RPB9P27999 RPP1BYDL130W 321 nt13.08□□□□□ -0.32
RPB9P27999 TRN1tP(UGG)A 72 nt12.86□□□□□ -0.35
RPB9P27999 SUF9tP(UGG)F 72 nt12.86□□□□□ -0.35
RPB9P27999 SUF8tP(UGG)H 72 nt12.86□□□□□ -0.35
RPB9P27999 tP(UGG)LtP(UGG)L 72 nt12.86□□□□□ -0.35
RPB9P27999 SUF7tP(UGG)M 72 nt12.86□□□□□ -0.35
RPB9P27999 tP(UGG)N1tP(UGG)N1 72 nt12.86□□□□□ -0.35
RPB9P27999 tP(UGG)N2tP(UGG)N2 72 nt12.86□□□□□ -0.35
RPB9P27999 tP(UGG)O1tP(UGG)O1 72 nt12.86□□□□□ -0.35
RPB9P27999 SUF11tP(UGG)O2 72 nt12.86□□□□□ -0.35
RPB9P27999 ATS1YAL020C 1002 nt12.85□□□□□ -0.35
RPB9P27999 DBP2YNL112W 1641 nt12.76□□□□□ -0.37
RPB9P27999 CCC1YLR220W 969 nt12.72□□□□□ -0.37
RPB9P27999 SCR1SCR1 522 nt12.45□□□□□ -0.42
RPB9P27999 PET122YER153C 765 nt12.41□□□□□ -0.42
RPB9P27999 tP(UGG)O3tP(UGG)O3 72 nt12.26□□□□□ -0.45
RPB9P27999 RVS167YDR388W 1449 nt12.2□□□□□ -0.46
RPB9P27999 YBR190WYBR190W 312 nt12.19□□□□□ -0.46
RPB9P27999 RRN5YLR141W 1092 nt12.1□□□□□ -0.47
RPB9P27999 RSB1YOR049C 1065 nt11.96□□□□□ -0.49
RPB9P27999 RTC3YHR087W 336 nt11.93□□□□□ -0.5
RPB9P27999 YDJ1YNL064C 1230 nt11.9□□□□□ -0.5
RPB9P27999 YER088W-BYER088W-B 147 nt11.86□□□□□ -0.51
RPB9P27999 PST2YDR032C 597 nt11.84□□□□□ -0.51
RPB9P27999 SHR5YOL110W 714 nt11.81□□□□□ -0.52
RPB9P27999 YKL097CYKL097C 411 nt11.56□□□□□ -0.56
RPB9P27999 GAR1YHR089C 618 nt11.54□□□□□ -0.56
RPB9P27999 DEP1YAL013W 1218 nt11.3□□□□□ -0.6
RPB9P27999 SHU1YHL006C 453 nt11.26□□□□□ -0.61
RPB9P27999 URN1YPR152C 1398 nt11.26□□□□□ -0.61
RPB9P27999 RPN10YHR200W 807 nt11.25□□□□□ -0.61
RPB9P27999 YNL208WYNL208W 600 nt11.23□□□□□ -0.61
RPB9P27999 TIR1YER011W 765 nt11.16□□□□□ -0.62
RPB9P27999 OPI9YLR338W 858 nt11.04□□□□□ -0.64
RPB9P27999 YOR139CYOR139C 393 nt10.97□□□□□ -0.65
RPB9P27999 YAL037C-BYAL037C-B 975 nt10.96□□□□□ -0.65
RPB9P27999 SSA1YAL005C 1929 nt10.91□□□□□ -0.66
RPB9P27999 NPL3YDR432W 1245 nt10.9□□□□□ -0.66
RPB9P27999 SAH1YER043C 1350 nt10.86□□□□□ -0.67
RPB9P27999 YGR021WYGR021W 873 nt10.8□□□□□ -0.68
RPB9P27999 YJR018WYJR018W 363 nt10.77□□□□□ -0.69
RPB9P27999 PUN1YLR414C 792 nt10.77□□□□□ -0.69
RPB9P27999 PUT4YOR348C 1884 nt10.76□□□□□ -0.69
RPB9P27999 SRB2YHR041C 633 nt10.71□□□□□ -0.69
RPB9P27999 HOM6YJR139C 1080 nt10.71□□□□□ -0.69
RPB9P27999 YOL037CYOL037C 354 nt10.71□□□□□ -0.69
RPB9P27999 RPP2BYDR382W 333 nt10.7□□□□□ -0.7
RPB9P27999 WWM1YFL010C 636 nt10.68□□□□□ -0.7
RPB9P27999 ARE1YCR048W 1833 nt10.66□□□□□ -0.7
RPB9P27999 MNP1YGL068W 585 nt10.66□□□□□ -0.7
RPB9P27999 YJR120WYJR120W 351 nt10.58□□□□□ -0.72
RPB9P27999 YFL021C-AYFL021C-A 855 nt10.57□□□□□ -0.72
RPB9P27999 RKM5YLR137W 1104 nt10.56□□□□□ -0.72
RPB9P27999 SSA3YBL075C 1950 nt10.56□□□□□ -0.72
RPB9P27999 tM(CAU)CtM(CAU)C 72 nt10.55□□□□□ -0.72
RPB9P27999 IMT4tM(CAU)E 72 nt10.55□□□□□ -0.72
RPB9P27999 IMT3tM(CAU)J3 72 nt10.55□□□□□ -0.72
RPB9P27999 IMT1tM(CAU)O1 72 nt10.55□□□□□ -0.72
RPB9P27999 IMT2tM(CAU)P 72 nt10.55□□□□□ -0.72
RPB9P27999 YHR049C-AYHR049C-A 297 nt10.54□□□□□ -0.72
RPB9P27999 PTC2YER089C 1395 nt10.52□□□□□ -0.72
RPB9P27999 BDH2YAL061W 1254 nt10.49□□□□□ -0.73
RPB9P27999 POA1YBR022W 534 nt10.47□□□□□ -0.73
RPB9P27999 LSM3YLR438C-A 270 nt10.45□□□□□ -0.74
RPB9P27999 INM2YDR287W 879 nt10.39□□□□□ -0.75
RPB9P27999 YLR281CYLR281C 468 nt10.39□□□□□ -0.75
RPB9P27999 PUS2YGL063W 1113 nt10.38□□□□□ -0.75
RPB9P27999 NAB2YGL122C 1578 nt10.38□□□□□ -0.75
RPB9P27999 BUD23YCR047C 828 nt10.34□□□□□ -0.75
RPB9P27999 YBL100CYBL100C 315 nt10.31□□□□□ -0.76
RPB9P27999 WHI5YOR083W 888 nt10.3□□□□□ -0.76
RPB9P27999 DAL1YIR027C 1383 nt10.29□□□□□ -0.76
RPB9P27999 FPR4YLR449W 1179 nt10.27□□□□□ -0.77
RPB9P27999 MOT3YMR070W 1473 nt10.27□□□□□ -0.77
RPB9P27999 TRM9YML014W 840 nt10.26□□□□□ -0.77
RPB9P27999 FIS1YIL065C 468 nt10.21□□□□□ -0.77
RPB9P27999 FUN26YAL022C 1554 nt10.18□□□□□ -0.78
RPB9P27999 BSC6YOL137W 1494 nt10.17□□□□□ -0.78
RPB9P27999 PHO4YFR034C 939 nt10.17□□□□□ -0.78
RPB9P27999 IMP2'YIL154C 1041 nt10.17□□□□□ -0.78
RPB9P27999 DSK2YMR276W 1122 nt10.14□□□□□ -0.79
RPB9P27999 FMP45YDL222C 930 nt10.12□□□□□ -0.79
RPB9P27999 CCT6YDR188W 1641 nt10.11□□□□□ -0.79
RPB9P27999 YLR154C-GYLR154C-G 150 nt10.09□□□□□ -0.79
RPB9P27999 SUF2tP(AGG)C 72 nt10.06□□□□□ -0.8
RPB9P27999 SUF10tP(AGG)N 72 nt10.06□□□□□ -0.8
RPB9P27999 YCH1YGR203W 447 nt10.06□□□□□ -0.8
Retrieved 100 of 7,029 protein–RNA pairs in 14.8 ms