RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W MYO1P08964 1928 aa0.59□□□□□ -2.32
VPS28YPL065W YLR419WQ06698 1435 aaKnown RBP0.58□□□□□ -2.32
VPS28YPL065W SHU1P38751 150 aa0.58□□□□□ -2.32
VPS28YPL065W SPP41P38904 1435 aa0.57□□□□□ -2.32
VPS28YPL065W YOR304C-AO14468 76 aa0.56□□□□□ -2.32
VPS28YPL065W YHR138CP38841 114 aaPredicted RBP0.56□□□□□ -2.32
VPS28YPL065W TOP2P06786 1428 aaKnown RBP0.55□□□□□ -2.32
VPS28YPL065W VMA21P41806 77 aa0.54□□□□□ -2.32
VPS28YPL065W YGR164WP53291 111 aa0.54□□□□□ -2.32
VPS28YPL065W SWC7Q06707 132 aa0.53□□□□□ -2.32
VPS28YPL065W RPA12P32529 125 aaKnown RBP0.51□□□□□ -2.33
VPS28YPL065W COX19Q3E731 98 aa0.51□□□□□ -2.33
VPS28YPL065W YPL038W-AQ3E7B4 63 aa0.51□□□□□ -2.33
VPS28YPL065W MIC10Q96VH5 97 aa0.5□□□□□ -2.33
VPS28YPL065W LYS2P07702 1392 aa0.49□□□□□ -2.33
VPS28YPL065W MPC2P38857 129 aa0.49□□□□□ -2.33
VPS28YPL065W RUB1Q03919 77 aa0.49□□□□□ -2.33
VPS28YPL065W YCR101CP25607 182 aa0.47□□□□□ -2.33
VPS28YPL065W LHP1P33399 275 aaKnown RBP0.47□□□□□ -2.33
VPS28YPL065W YOS1Q3E834 85 aa0.46□□□□□ -2.34
VPS28YPL065W TAO3P40468 2376 aa0.45□□□□□ -2.34
VPS28YPL065W GNA1P43577 159 aaPredicted RBP0.45□□□□□ -2.34
VPS28YPL065W SRB6P32570 121 aa0.44□□□□□ -2.34
VPS28YPL065W RPS11AP0CX47 156 aaKnown RBP0.43□□□□□ -2.34
VPS28YPL065W RPS11BP0CX48 156 aaKnown RBP0.43□□□□□ -2.34
VPS28YPL065W YMR103CQ04436 120 aa0.43□□□□□ -2.34
VPS28YPL065W KRE5P22023 1365 aa0.43□□□□□ -2.34
VPS28YPL065W COX12Q01519 83 aa0.42□□□□□ -2.34
VPS28YPL065W UBC4P15731 148 aa0.41□□□□□ -2.34
VPS28YPL065W YNL190WP53872 204 aa0.41□□□□□ -2.34
VPS28YPL065W YCR095W-AQ3E787 52 aa0.4□□□□□ -2.35
VPS28YPL065W MRPL38P35996 138 aaPredicted RBP0.38□□□□□ -2.35
VPS28YPL065W MRX7P53869 86 aa0.38□□□□□ -2.35
VPS28YPL065W RIM15P43565 1770 aa0.37□□□□□ -2.35
VPS28YPL065W BPT1P14772 1559 aa0.36□□□□□ -2.35
VPS28YPL065W PAU5P43575 122 aa0.36□□□□□ -2.35
VPS28YPL065W SRB8P25648 1427 aa0.36□□□□□ -2.35
VPS28YPL065W YMR090WQ04304 227 aaKnown RBP0.35□□□□□ -2.35
VPS28YPL065W ICY1Q04329 127 aa0.35□□□□□ -2.35
VPS28YPL065W SSN2P38931 1420 aa0.35□□□□□ -2.35
VPS28YPL065W PAU6P0CE90 120 aa0.34□□□□□ -2.36
VPS28YPL065W PAU18P0CE91 120 aa0.34□□□□□ -2.36
VPS28YPL065W RPS12P48589 143 aaKnown RBP0.34□□□□□ -2.36
VPS28YPL065W TY3B-IQ7LHG5 1498 aaKnown RBP0.34□□□□□ -2.36
VPS28YPL065W TSC11P40061 1430 aa0.33□□□□□ -2.36
VPS28YPL065W UBC5P15732 148 aa0.33□□□□□ -2.36
VPS28YPL065W YER137CP40083 148 aaKnown RBP0.33□□□□□ -2.36
VPS28YPL065W SNA2P56508 79 aa0.33□□□□□ -2.36
VPS28YPL065W YNR034W-AQ3E841 98 aa0.31□□□□□ -2.36
VPS28YPL065W ROX3P25046 220 aa0.3□□□□□ -2.36
VPS28YPL065W YBR090CP38253 122 aa0.3□□□□□ -2.36
VPS28YPL065W MIX14Q04341 121 aa0.29□□□□□ -2.36
VPS28YPL065W YRF1-2P40105 1681 aa0.28□□□□□ -2.36
VPS28YPL065W MRP17P28778 131 aa0.28□□□□□ -2.36
VPS28YPL065W YBR292CP38357 123 aa0.28□□□□□ -2.36
VPS28YPL065W RSM19P53733 91 aaPredicted RBP0.28□□□□□ -2.36
VPS28YPL065W NTE1Q04958 1679 aa0.27□□□□□ -2.37
VPS28YPL065W TY1B-BLQ12490 1755 aa0.27□□□□□ -2.37
VPS28YPL065W YBL071CP38185 102 aa0.26□□□□□ -2.37
VPS28YPL065W RSM18P40033 138 aa0.26□□□□□ -2.37
VPS28YPL065W RPC10P40422 70 aa0.26□□□□□ -2.37
VPS28YPL065W PAU20Q08322 120 aa0.26□□□□□ -2.37
VPS28YPL065W YRF1-1P0CX20 1796 aa0.24□□□□□ -2.37
VPS28YPL065W YRF1-5P0CX21 1796 aa0.24□□□□□ -2.37
VPS28YPL065W YRF1-8P0CX22 1796 aa0.24□□□□□ -2.37
VPS28YPL065W YNL198CP40166 100 aa0.24□□□□□ -2.37
VPS28YPL065W GEA1P47102 1408 aaPredicted RBP0.23□□□□□ -2.37
VPS28YPL065W KSH1Q8TGJ3 72 aa0.23□□□□□ -2.37
VPS28YPL065W PDR11P40550 1411 aa0.21□□□□□ -2.38
VPS28YPL065W YOR289WQ12012 251 aaPredicted RBP0.21□□□□□ -2.38
VPS28YPL065W MDS3P53094 1487 aa0.21□□□□□ -2.38
VPS28YPL065W AIM19P40502 157 aa0.2□□□□□ -2.38
VPS28YPL065W YHL005CP38752 130 aa0.19□□□□□ -2.38
VPS28YPL065W RGI1P40043 161 aaPredicted RBP0.19□□□□□ -2.38
VPS28YPL065W YBR016WP38216 128 aa0.17□□□□□ -2.38
VPS28YPL065W CAT8P39113 1433 aa0.17□□□□□ -2.38
VPS28YPL065W PAU1P0CE88 120 aa0.16□□□□□ -2.38
VPS28YPL065W PAU14P0CE89 120 aa0.16□□□□□ -2.38
VPS28YPL065W PAU8P0CE92 120 aa0.16□□□□□ -2.38
VPS28YPL065W PAU11P0CE93 120 aa0.16□□□□□ -2.38
VPS28YPL065W PAU13P38725 120 aa0.16□□□□□ -2.38
VPS28YPL065W PAU10Q03050 120 aa0.16□□□□□ -2.38
VPS28YPL065W NHP10Q03435 203 aa0.16□□□□□ -2.38
VPS28YPL065W PAU9Q3E770 120 aa0.16□□□□□ -2.38
VPS28YPL065W SPC1P46965 94 aa0.15□□□□□ -2.39
VPS28YPL065W HMRA1P0CY11 126 aa0.14□□□□□ -2.39
VPS28YPL065W RRT15Q3E811 62 aa0.13□□□□□ -2.39
VPS28YPL065W YFR009W-AP0C5M9 85 aa0.12□□□□□ -2.39
VPS28YPL065W EMC5P40540 141 aa0.11□□□□□ -2.39
VPS28YPL065W ATX1P38636 73 aa0.1□□□□□ -2.39
VPS28YPL065W PAU4P53427 120 aa0.1□□□□□ -2.39
VPS28YPL065W GEA2P39993 1459 aaKnown RBP0.1□□□□□ -2.39
VPS28YPL065W REV3P14284 1504 aa0.09□□□□□ -2.39
VPS28YPL065W BUD4P47136 1447 aa0.08□□□□□ -2.4
VPS28YPL065W YJR107C-AP0CT86 78 aa0.08□□□□□ -2.4
VPS28YPL065W RPL38P49167 78 aaKnown RBP0.06□□□□□ -2.4
VPS28YPL065W YNL042W-BQ3E7Z2 85 aa0.04□□□□□ -2.4
VPS28YPL065W Q0032Q9ZZX7 96 aa0.03□□□□□ -2.4
VPS28YPL065W FYV7Q12247 151 aa0.02□□□□□ -2.41
VPS28YPL065W RSF2P46974 1380 aa0.01□□□□□ -2.41
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms