RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	YOL118C	Q08259	102 aa		0.39	□□□□□ -2.35
RSM28	YDR494W	YRF1-6	P53819	1859 aa		0.39	□□□□□ -2.35
RSM28	YDR494W	TSC11	P40061	1430 aa		0.38	□□□□□ -2.35
RSM28	YDR494W	UBC4	P15731	148 aa		0.38	□□□□□ -2.35
RSM28	YDR494W	IMP2	P46972	177 aa		0.38	□□□□□ -2.35
RSM28	YDR494W	YCL048W-A	Q2V2Q2	79 aa		0.38	□□□□□ -2.35
RSM28	YDR494W	YOS1	Q3E834	85 aa		0.38	□□□□□ -2.35
RSM28	YDR494W	BUD4	P47136	1447 aa		0.38	□□□□□ -2.35
RSM28	YDR494W	CCW14	O13547	238 aa		0.37	□□□□□ -2.35
RSM28	YDR494W	UBC5	P15732	148 aa		0.37	□□□□□ -2.35
RSM28	YDR494W	SHU1	P38751	150 aa		0.37	□□□□□ -2.35
RSM28	YDR494W	YHR173C	P38864	112 aa		0.37	□□□□□ -2.35
RSM28	YDR494W	RGI1	P40043	161 aa	Predicted RBP	0.37	□□□□□ -2.35
RSM28	YDR494W	RSM19	P53733	91 aa	Predicted RBP	0.37	□□□□□ -2.35
RSM28	YDR494W	YMR090W	Q04304	227 aa	Known RBP	0.37	□□□□□ -2.35
RSM28	YDR494W	YPL038W-A	Q3E7B4	63 aa		0.37	□□□□□ -2.35
RSM28	YDR494W	TOP2	P06786	1428 aa	Known RBP	0.37	□□□□□ -2.35
RSM28	YDR494W	BRR2	P32639	2163 aa	Known RBP	0.36	□□□□□ -2.35
RSM28	YDR494W	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.36	□□□□□ -2.35
RSM28	YDR494W	PAU6	P0CE90	120 aa		0.36	□□□□□ -2.35
RSM28	YDR494W	PAU18	P0CE91	120 aa		0.36	□□□□□ -2.35
RSM28	YDR494W	SRB6	P32570	121 aa		0.36	□□□□□ -2.35
RSM28	YDR494W	YBR090C	P38253	122 aa		0.36	□□□□□ -2.35
RSM28	YDR494W	YIL086C	P40503	102 aa		0.36	□□□□□ -2.35
RSM28	YDR494W	SWC7	Q06707	132 aa		0.36	□□□□□ -2.35
RSM28	YDR494W	YCR095W-A	Q3E787	52 aa		0.36	□□□□□ -2.35
RSM28	YDR494W	YOL164W-A	Q3E7A5	60 aa		0.36	□□□□□ -2.35
RSM28	YDR494W	PDR11	P40550	1411 aa		0.36	□□□□□ -2.35
RSM28	YDR494W	BNI1	P41832	1953 aa		0.36	□□□□□ -2.35
RSM28	YDR494W	MDS3	P53094	1487 aa		0.35	□□□□□ -2.35
RSM28	YDR494W	ROX3	P25046	220 aa		0.35	□□□□□ -2.35
RSM28	YDR494W	RPA12	P32529	125 aa	Known RBP	0.35	□□□□□ -2.35
RSM28	YDR494W	RRT15	Q3E811	62 aa		0.35	□□□□□ -2.35
RSM28	YDR494W	TY4B-H	P0C2J7	1802 aa		0.35	□□□□□ -2.35
RSM28	YDR494W	YBL071C	P38185	102 aa		0.34	□□□□□ -2.36
RSM28	YDR494W	MRX7	P53869	86 aa		0.34	□□□□□ -2.36
RSM28	YDR494W	SNA2	P56508	79 aa		0.34	□□□□□ -2.36
RSM28	YDR494W	YOR289W	Q12012	251 aa	Predicted RBP	0.34	□□□□□ -2.36
RSM28	YDR494W	FYV7	Q12247	151 aa		0.34	□□□□□ -2.36
RSM28	YDR494W	YDR010C	Q12426	110 aa		0.34	□□□□□ -2.36
RSM28	YDR494W	YBR072C-A	Q3E794	53 aa		0.34	□□□□□ -2.36
RSM28	YDR494W	YNR034W-A	Q3E841	98 aa		0.34	□□□□□ -2.36
RSM28	YDR494W	KSH1	Q8TGJ3	72 aa		0.34	□□□□□ -2.36
RSM28	YDR494W	POL2	P21951	2222 aa	Known RBP	0.33	□□□□□ -2.36
RSM28	YDR494W	MPC2	P38857	129 aa		0.33	□□□□□ -2.36
RSM28	YDR494W	BLM10	P43583	2143 aa		0.33	□□□□□ -2.36
RSM28	YDR494W	MIX14	Q04341	121 aa		0.33	□□□□□ -2.36
RSM28	YDR494W	SRB8	P25648	1427 aa		0.32	□□□□□ -2.36
RSM28	YDR494W	GEA1	P47102	1408 aa	Predicted RBP	0.32	□□□□□ -2.36
RSM28	YDR494W	HMRA1	P0CY11	126 aa		0.32	□□□□□ -2.36
RSM28	YDR494W	MRP17	P28778	131 aa		0.32	□□□□□ -2.36
RSM28	YDR494W	MRPL38	P35996	138 aa	Predicted RBP	0.32	□□□□□ -2.36
RSM28	YDR494W	SPC1	P46965	94 aa		0.32	□□□□□ -2.36
RSM28	YDR494W	COX12	Q01519	83 aa		0.32	□□□□□ -2.36
RSM28	YDR494W	YRF1-1	P0CX20	1796 aa		0.32	□□□□□ -2.36
RSM28	YDR494W	YRF1-5	P0CX21	1796 aa		0.32	□□□□□ -2.36
RSM28	YDR494W	YRF1-8	P0CX22	1796 aa		0.32	□□□□□ -2.36
RSM28	YDR494W	BPT1	P14772	1559 aa		0.32	□□□□□ -2.36
RSM28	YDR494W	SSN2	P38931	1420 aa		0.31	□□□□□ -2.36
RSM28	YDR494W	MYO1	P08964	1928 aa		0.31	□□□□□ -2.36
RSM28	YDR494W	RPS11A	P0CX47	156 aa	Known RBP	0.31	□□□□□ -2.36
RSM28	YDR494W	RPS11B	P0CX48	156 aa	Known RBP	0.31	□□□□□ -2.36
RSM28	YDR494W	EMC5	P40540	141 aa		0.31	□□□□□ -2.36
RSM28	YDR494W	NHP10	Q03435	203 aa		0.31	□□□□□ -2.36
RSM28	YDR494W	ICY1	Q04329	127 aa		0.31	□□□□□ -2.36
RSM28	YDR494W	PAU20	Q08322	120 aa		0.31	□□□□□ -2.36
RSM28	YDR494W	COX19	Q3E731	98 aa		0.31	□□□□□ -2.36
RSM28	YDR494W	REV3	P14284	1504 aa		0.3	□□□□□ -2.36
RSM28	YDR494W	NTE1	Q04958	1679 aa		0.3	□□□□□ -2.36
RSM28	YDR494W	RSF2	P46974	1380 aa		0.3	□□□□□ -2.36
RSM28	YDR494W	GEA2	P39993	1459 aa	Known RBP	0.29	□□□□□ -2.36
RSM28	YDR494W	PAU1	P0CE88	120 aa		0.29	□□□□□ -2.36
RSM28	YDR494W	PAU14	P0CE89	120 aa		0.29	□□□□□ -2.36
RSM28	YDR494W	PAU8	P0CE92	120 aa		0.29	□□□□□ -2.36
RSM28	YDR494W	PAU11	P0CE93	120 aa		0.29	□□□□□ -2.36
RSM28	YDR494W	PAU13	P38725	120 aa		0.29	□□□□□ -2.36
RSM28	YDR494W	RSM18	P40033	138 aa		0.29	□□□□□ -2.36
RSM28	YDR494W	RPC10	P40422	70 aa		0.29	□□□□□ -2.36
RSM28	YDR494W	RPS29B	P41058	56 aa	Known RBP	0.29	□□□□□ -2.36
RSM28	YDR494W	PAU4	P53427	120 aa		0.29	□□□□□ -2.36
RSM28	YDR494W	YNL190W	P53872	204 aa		0.29	□□□□□ -2.36
RSM28	YDR494W	PAU10	Q03050	120 aa		0.29	□□□□□ -2.36
RSM28	YDR494W	PAU9	Q3E770	120 aa		0.29	□□□□□ -2.36
RSM28	YDR494W	FAS2	P19097	1887 aa	Known RBP	0.29	□□□□□ -2.36
RSM28	YDR494W	RPA190	P10964	1664 aa	Known RBP	0.28	□□□□□ -2.36
RSM28	YDR494W	YHL005C	P38752	130 aa		0.28	□□□□□ -2.36
RSM28	YDR494W	MSL1	P40567	111 aa	Predicted RBP	0.28	□□□□□ -2.36
RSM28	YDR494W	ZEO1	Q08245	113 aa		0.28	□□□□□ -2.36
RSM28	YDR494W	YPL225W	Q08971	146 aa	Known RBP	0.28	□□□□□ -2.36
RSM28	YDR494W	CAT8	P39113	1433 aa		0.28	□□□□□ -2.37
RSM28	YDR494W	RIM15	P43565	1770 aa		0.27	□□□□□ -2.37
RSM28	YDR494W	YDR029W	Q12111	104 aa		0.27	□□□□□ -2.37
RSM28	YDR494W	YRF1-2	P40105	1681 aa		0.27	□□□□□ -2.37
RSM28	YDR494W	TY1B-BL	Q12490	1755 aa		0.27	□□□□□ -2.37
RSM28	YDR494W	YBR292C	P38357	123 aa		0.26	□□□□□ -2.37
RSM28	YDR494W	AIM19	P40502	157 aa		0.26	□□□□□ -2.37
RSM28	YDR494W	POL1	P13382	1468 aa		0.25	□□□□□ -2.37
RSM28	YDR494W	NHP2	P32495	156 aa	Predicted RBP	0.25	□□□□□ -2.37
RSM28	YDR494W	YDR042C	Q03205	200 aa		0.25	□□□□□ -2.37
RSM28	YDR494W	PDR10	P51533	1564 aa		0.24	□□□□□ -2.37

Retrieved 100 of 5,963 RNA–protein pairs in 53.6 ms