RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C MSW1P04803 379 aa1.35□□□□□ -2.19
VPS35YJL154C RPL9AP05738 191 aaKnown RBP1.35□□□□□ -2.19
VPS35YJL154C YLR156WP0CE96 114 aa1.35□□□□□ -2.19
VPS35YJL154C YLR159WP0CE97 114 aa1.35□□□□□ -2.19
VPS35YJL154C YLR161WP0CE98 114 aa1.35□□□□□ -2.19
VPS35YJL154C HMRA1P0CY11 126 aa1.35□□□□□ -2.19
VPS35YJL154C HAP3P13434 144 aa1.35□□□□□ -2.19
VPS35YJL154C BET1P22804 142 aa1.35□□□□□ -2.19
VPS35YJL154C PAM17P36147 197 aa1.35□□□□□ -2.19
VPS35YJL154C LSM2P38203 95 aaKnown RBP1.35□□□□□ -2.19
VPS35YJL154C IPT1P38954 527 aa1.35□□□□□ -2.19
VPS35YJL154C VTC1P40046 129 aaRIP-Chip data1.35□□□□□ -2.19not detected
VPS35YJL154C YER135CP40082 130 aa1.35□□□□□ -2.19
VPS35YJL154C RPL9BP51401 191 aaKnown RBP1.35□□□□□ -2.19
VPS35YJL154C RCE1Q03530 315 aa1.35□□□□□ -2.19
VPS35YJL154C SPG3Q04398 127 aaPredicted RBP1.35□□□□□ -2.19
VPS35YJL154C FYV12Q08559 129 aa1.35□□□□□ -2.19
VPS35YJL154C ECM29P38737 1868 aa1.35□□□□□ -2.19
VPS35YJL154C TRA1P38811 3744 aa1.35□□□□□ -2.19
VPS35YJL154C COX5BP00425 151 aa1.34□□□□□ -2.19
VPS35YJL154C RAD6P06104 172 aa1.34□□□□□ -2.19
VPS35YJL154C YGL010WP25338 174 aa1.34□□□□□ -2.19
VPS35YJL154C TMA19P35691 167 aaKnown RBP1.34□□□□□ -2.19
VPS35YJL154C YGR164WP53291 111 aa1.34□□□□□ -2.19
VPS35YJL154C FIT3Q08907 204 aa1.34□□□□□ -2.19
VPS35YJL154C YPR170W-BP0C5R9 85 aa1.34□□□□□ -2.19
VPS35YJL154C URA5P13298 226 aaKnown RBP1.34□□□□□ -2.19
VPS35YJL154C ERG25P53045 309 aa1.34□□□□□ -2.19
VPS35YJL154C YPL067CQ02754 198 aa1.34□□□□□ -2.19
VPS35YJL154C YDR029WQ12111 104 aa1.34□□□□□ -2.19
VPS35YJL154C CPA1P07258 411 aaKnown RBP1.34□□□□□ -2.2
VPS35YJL154C YCR099CP25657 155 aa1.34□□□□□ -2.2
VPS35YJL154C MRPL11P36521 249 aaPredicted RBP1.34□□□□□ -2.2
VPS35YJL154C YAL064WP39711 94 aa1.34□□□□□ -2.2
VPS35YJL154C YEL028WP39989 153 aa1.34□□□□□ -2.2
VPS35YJL154C NSA2P40078 261 aaKnown RBP1.34□□□□□ -2.2
VPS35YJL154C TIR3P40552 269 aa1.34□□□□□ -2.2
VPS35YJL154C FIT1Q04433 528 aa1.34□□□□□ -2.2
VPS35YJL154C SEN15Q04675 128 aa1.34□□□□□ -2.2
VPS35YJL154C GAL83Q04739 417 aa1.34□□□□□ -2.2
VPS35YJL154C KSH1Q8TGJ3 72 aa1.34□□□□□ -2.2
VPS35YJL154C YAR023CD6VPM8 179 aa1.33□□□□□ -2.2
VPS35YJL154C RAS2P01120 322 aaKnown RBP1.33□□□□□ -2.2
VPS35YJL154C INO4P13902 151 aa1.33□□□□□ -2.2
VPS35YJL154C YMR090WQ04304 227 aaKnown RBP1.33□□□□□ -2.2
VPS35YJL154C SYM1Q06563 197 aa1.33□□□□□ -2.2
VPS35YJL154C YFR010W-AP0C5N0 62 aa1.33□□□□□ -2.2
VPS35YJL154C MDH2P22133 377 aa1.33□□□□□ -2.2
VPS35YJL154C YET1P35723 206 aa1.33□□□□□ -2.2
VPS35YJL154C YBR013CP38215 129 aa1.33□□□□□ -2.2
VPS35YJL154C YHL042WP38729 150 aa1.33□□□□□ -2.2
VPS35YJL154C YJR146WP47174 117 aa1.33□□□□□ -2.2
VPS35YJL154C UPS3Q04006 179 aa1.33□□□□□ -2.2
VPS35YJL154C ATP20Q12233 115 aa1.33□□□□□ -2.2
VPS35YJL154C YHR213W-AQ8TGT4 77 aa1.33□□□□□ -2.2
VPS35YJL154C MAK31P23059 88 aa1.32□□□□□ -2.2
VPS35YJL154C CWP2P43497 92 aa1.32□□□□□ -2.2
VPS35YJL154C DAN1P47178 298 aa1.32□□□□□ -2.2
VPS35YJL154C SPG1P50088 95 aa1.32□□□□□ -2.2
VPS35YJL154C RAF1Q06891 181 aa1.32□□□□□ -2.2
VPS35YJL154C EMC6Q12431 108 aa1.32□□□□□ -2.2
VPS35YJL154C YOS1Q3E834 85 aa1.32□□□□□ -2.2
VPS35YJL154C MIC10Q96VH5 97 aa1.32□□□□□ -2.2
VPS35YJL154C ODC2Q99297 307 aa1.32□□□□□ -2.2
VPS35YJL154C DUR1,2P32528 1835 aaKnown RBP1.32□□□□□ -2.2
VPS35YJL154C ECM12O13529 151 aa1.32□□□□□ -2.2
VPS35YJL154C UBC4P15731 148 aa1.32□□□□□ -2.2
VPS35YJL154C FUN14P18411 198 aa1.32□□□□□ -2.2
VPS35YJL154C SNF11P38956 169 aa1.32□□□□□ -2.2
VPS35YJL154C YFR035CP43608 114 aa1.32□□□□□ -2.2
VPS35YJL154C YMR082CQ04276 118 aa1.32□□□□□ -2.2
VPS35YJL154C RRT7Q07829 113 aa1.32□□□□□ -2.2
VPS35YJL154C CSI2Q08054 341 aa1.32□□□□□ -2.2
VPS35YJL154C VPS68Q12016 184 aa1.32□□□□□ -2.2
VPS35YJL154C TIM9O74700 87 aa1.31□□□□□ -2.2
VPS35YJL154C UMP1P38293 148 aa1.31□□□□□ -2.2
VPS35YJL154C TDA2P40045 126 aa1.31□□□□□ -2.2
VPS35YJL154C EMC5P40540 141 aa1.31□□□□□ -2.2
VPS35YJL154C MSL1P40567 111 aaPredicted RBP1.31□□□□□ -2.2
VPS35YJL154C CIS3P47001 227 aa1.31□□□□□ -2.2
VPS35YJL154C SCS22Q6Q595 175 aa1.31□□□□□ -2.2
VPS35YJL154C STF2P16965 84 aa1.31□□□□□ -2.2
VPS35YJL154C YEL073CP39974 107 aa1.31□□□□□ -2.2
VPS35YJL154C FLX1P40464 311 aa1.31□□□□□ -2.2
VPS35YJL154C YFL065CP43539 102 aa1.31□□□□□ -2.2
VPS35YJL154C YNR064CP53750 290 aa1.31□□□□□ -2.2
VPS35YJL154C YDR274CP87283 123 aa1.31□□□□□ -2.2
VPS35YJL154C YPR203WQ08994 102 aa1.31□□□□□ -2.2
VPS35YJL154C COA6Q3E846 104 aa1.31□□□□□ -2.2
VPS35YJL154C POR1P04840 283 aaKnown RBP1.3□□□□□ -2.2
VPS35YJL154C SSS1P35179 80 aa1.3□□□□□ -2.2
VPS35YJL154C YKL044WP36092 106 aa1.3□□□□□ -2.2
VPS35YJL154C RRT1P38192 103 aa1.3□□□□□ -2.2
VPS35YJL154C PHO88P38264 188 aaPredicted RBP1.3□□□□□ -2.2
VPS35YJL154C CTR2P38865 189 aa1.3□□□□□ -2.2
VPS35YJL154C MRPS8Q03799 155 aa1.3□□□□□ -2.2
VPS35YJL154C GPI19Q04082 140 aa1.3□□□□□ -2.2
VPS35YJL154C YOR385WQ08909 290 aa1.3□□□□□ -2.2
VPS35YJL154C YLR365WQ7LIF2 110 aa1.3□□□□□ -2.2
VPS35YJL154C YOL162WP0CF19 215 aa1.3□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 30.1 ms