RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W YMR31P19955 123 aa2.67□□□□□ -1.98
USE1YGL098W DSE2P38844 325 aa2.67□□□□□ -1.98
USE1YGL098W VPS55P47111 140 aa2.67□□□□□ -1.98
USE1YGL098W MST27P53176 234 aa2.67□□□□□ -1.98
USE1YGL098W SNP1Q00916 300 aaPredicted RBP2.67□□□□□ -1.98
USE1YGL098W YMR254CQ04838 102 aa2.67□□□□□ -1.98
USE1YGL098W IRC19Q07843 230 aa2.67□□□□□ -1.98
USE1YGL098W YOR387CQ08910 206 aa2.67□□□□□ -1.98
USE1YGL098W YPL261CQ08976 102 aa2.67□□□□□ -1.98
USE1YGL098W YOR343CQ12484 108 aa2.67□□□□□ -1.98
USE1YGL098W IGO2Q9P305 131 aa2.67□□□□□ -1.98
USE1YGL098W RPL11AP0C0W9 174 aaKnown RBP2.66□□□□□ -1.98
USE1YGL098W TOM40P23644 387 aaKnown RBP2.66□□□□□ -1.98
USE1YGL098W FPR2P32472 135 aa2.66□□□□□ -1.98
USE1YGL098W SWD3P38123 315 aa2.66□□□□□ -1.98
USE1YGL098W RRT13P40042 185 aa2.66□□□□□ -1.98
USE1YGL098W YFL051CP43552 160 aa2.66□□□□□ -1.98
USE1YGL098W CIS3P47001 227 aa2.66□□□□□ -1.98
USE1YGL098W NCE101Q02820 53 aa2.66□□□□□ -1.98
USE1YGL098W RXT3Q07458 294 aa2.66□□□□□ -1.98
USE1YGL098W FIT2Q08906 153 aa2.66□□□□□ -1.98
USE1YGL098W YOR029WQ12243 111 aa2.66□□□□□ -1.98
USE1YGL098W EMC6Q12431 108 aa2.66□□□□□ -1.98
USE1YGL098W YGL258W-AQ3E740 77 aa2.66□□□□□ -1.98
USE1YGL098W RPL11BQ3E757 174 aaPredicted RBP2.66□□□□□ -1.98
USE1YGL098W YNL277W-AQ3E7Z0 62 aa2.66□□□□□ -1.98
USE1YGL098W RPS16AP0CX51 143 aaKnown RBP2.65□□□□□ -1.99
USE1YGL098W RPS16BP0CX52 143 aaKnown RBP2.65□□□□□ -1.99
USE1YGL098W BET1P22804 142 aa2.65□□□□□ -1.99
USE1YGL098W ROX3P25046 220 aa2.65□□□□□ -1.99
USE1YGL098W YSY6P38374 65 aa2.65□□□□□ -1.99
USE1YGL098W TOM7P53507 60 aa2.65□□□□□ -1.99
USE1YGL098W YLR112WQ12130 139 aa2.65□□□□□ -1.99
USE1YGL098W YLR111WQ12528 110 aa2.65□□□□□ -1.99
USE1YGL098W RPS8AP0CX39 200 aaKnown RBP2.64□□□□□ -1.99
USE1YGL098W RPS8BP0CX40 200 aaKnown RBP2.64□□□□□ -1.99
USE1YGL098W RPL18AP0CX49 186 aaKnown RBP2.64□□□□□ -1.99
USE1YGL098W RPL18BP0CX50 186 aaKnown RBP2.64□□□□□ -1.99
USE1YGL098W MRS3P10566 314 aa2.64□□□□□ -1.99
USE1YGL098W PCL2P25693 308 aa2.64□□□□□ -1.99
USE1YGL098W RPL16BP26785 198 aaKnown RBP2.64□□□□□ -1.99
USE1YGL098W REC104P33323 182 aa2.64□□□□□ -1.99
USE1YGL098W YRA2P36036 203 aaKnown RBP RIP-Chip data2.64□□□□□ -1.99not detected
USE1YGL098W SIM1P40472 476 aa2.64□□□□□ -1.99
USE1YGL098W YIA6P40556 373 aa2.64□□□□□ -1.99
USE1YGL098W SGN1P40561 250 aaKnown RBP RIP-Chip data2.64□□□□□ -1.99not detected
USE1YGL098W SFT1P43682 97 aa2.64□□□□□ -1.99
USE1YGL098W VEL1P53058 206 aa2.64□□□□□ -1.99
USE1YGL098W MMS2P53152 137 aa2.64□□□□□ -1.99
USE1YGL098W RSM19P53733 91 aaPredicted RBP2.64□□□□□ -1.99
USE1YGL098W YNR077CP53758 84 aa2.64□□□□□ -1.99
USE1YGL098W DAD4P69851 72 aa2.64□□□□□ -1.99
USE1YGL098W VPS68Q12016 184 aa2.64□□□□□ -1.99
USE1YGL098W YDR381C-AQ3E6R5 114 aa2.64□□□□□ -1.99
USE1YGL098W KSH1Q8TGJ3 72 aa2.64□□□□□ -1.99
USE1YGL098W YHR214C-EQ8TGK0 99 aa2.64□□□□□ -1.99
USE1YGL098W PFY1P07274 126 aa2.63□□□□□ -1.99
USE1YGL098W RPL42AP0CX27 106 aaKnown RBP2.63□□□□□ -1.99
USE1YGL098W RPL42BP0CX28 106 aaKnown RBP2.63□□□□□ -1.99
USE1YGL098W HMRA2P0CY13 119 aa2.63□□□□□ -1.99
USE1YGL098W PET8P38921 284 aa2.63□□□□□ -1.99
USE1YGL098W YAR029WP39549 74 aa2.63□□□□□ -1.99
USE1YGL098W AIM19P40502 157 aa2.63□□□□□ -1.99
USE1YGL098W YIL029CP40538 142 aa2.63□□□□□ -1.99
USE1YGL098W ATP23P53722 227 aa2.63□□□□□ -1.99
USE1YGL098W SWS2P53937 143 aa2.63□□□□□ -1.99
USE1YGL098W HAL1Q01766 294 aa2.63□□□□□ -1.99
USE1YGL098W MGR2Q02889 113 aa2.63□□□□□ -1.99
USE1YGL098W YDR209CQ03480 137 aa2.63□□□□□ -1.99
USE1YGL098W YHP1Q04116 353 aa2.63□□□□□ -1.99
USE1YGL098W MIX14Q04341 121 aa2.63□□□□□ -1.99
USE1YGL098W YLR194CQ05777 254 aa2.63□□□□□ -1.99
USE1YGL098W PBA1Q05778 276 aa2.63□□□□□ -1.99
USE1YGL098W YOL118CQ08259 102 aa2.63□□□□□ -1.99
USE1YGL098W RRS1Q08746 203 aaKnown RBP2.63□□□□□ -1.99
USE1YGL098W TIM22Q12328 207 aa2.63□□□□□ -1.99
USE1YGL098W YOR192C-CQ3E736 78 aa2.63□□□□□ -1.99
USE1YGL098W UBC4P15731 148 aa2.62□□□□□ -1.99
USE1YGL098W LDB16P25587 256 aa2.62□□□□□ -1.99
USE1YGL098W FMP46P36141 133 aaKnown RBP2.62□□□□□ -1.99
USE1YGL098W LYS1P38998 373 aaRIP-Chip data2.62□□□□□ -1.99not detected
USE1YGL098W MBB1P39534 108 aa2.62□□□□□ -1.99
USE1YGL098W YEL067CP39978 195 aa2.62□□□□□ -1.99
USE1YGL098W YER187WP40102 141 aa2.62□□□□□ -1.99
USE1YGL098W HUA1P40325 198 aa2.62□□□□□ -1.99
USE1YGL098W VHS2P40463 436 aa2.62□□□□□ -1.99
USE1YGL098W TOS6P48560 102 aa2.62□□□□□ -1.99
USE1YGL098W YGR219WP53307 113 aa2.62□□□□□ -1.99
USE1YGL098W YNL046WP53956 172 aa2.62□□□□□ -1.99
USE1YGL098W HSK3P69852 69 aa2.62□□□□□ -1.99
USE1YGL098W YMR317WQ04893 1140 aa2.62□□□□□ -1.99
USE1YGL098W YLR281CQ05863 155 aa2.62□□□□□ -1.99
USE1YGL098W IRC23Q08416 157 aa2.62□□□□□ -1.99
USE1YGL098W CCH1P50077 2039 aa2.61□□□□□ -1.99
USE1YGL098W YAL064W-BO13512 126 aa2.61□□□□□ -1.99
USE1YGL098W CCW14O13547 238 aa2.61□□□□□ -1.99
USE1YGL098W YKR032WP36127 104 aa2.61□□□□□ -1.99
USE1YGL098W MPC2P38857 129 aa2.61□□□□□ -1.99
USE1YGL098W PEX22P39718 180 aa2.61□□□□□ -1.99
USE1YGL098W YER079WP40052 210 aaKnown RBP2.61□□□□□ -1.99
Retrieved 100 of 5,963 RNA–protein pairs in 28.7 ms